RNA–Protein interactions for RNA: ENST00000291074.9

VPS53-201, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,656 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-201ENST00000291074 ZNF888P0CJ79 500 aaPredicted RBP18.87■□□□□ 0.61
VPS53-201ENST00000291074 SNRPGP62308 76 aaKnown RBP18.87■□□□□ 0.61
VPS53-201ENST00000291074 TUBA1BP68363 451 aa18.87■□□□□ 0.61
VPS53-201ENST00000291074 TUBA1AQ71U36 451 aa18.87■□□□□ 0.61
VPS53-201ENST00000291074 PAQR7Q86WK9 346 aa18.87■□□□□ 0.61
VPS53-201ENST00000291074 C9orf43Q8TAL5 461 aaPredicted RBP18.87■□□□□ 0.61
VPS53-201ENST00000291074 MROQ9BYG7 248 aa18.87■□□□□ 0.61
VPS53-201ENST00000291074 NDOR1Q9UHB4 597 aa18.87■□□□□ 0.61
VPS53-201ENST00000291074 GPR55Q9Y2T6 319 aaPredicted RBP18.87■□□□□ 0.61
VPS53-201ENST00000291074 KPNA4O00629 521 aaPredicted RBP18.87■□□□□ 0.61
VPS53-201ENST00000291074 GUCY1B2O75343 617 aa18.87■□□□□ 0.61
VPS53-201ENST00000291074 SMIM11AP58511 58 aa18.87■□□□□ 0.61
VPS53-201ENST00000291074 CHRNEQ04844 493 aa18.87■□□□□ 0.61
VPS53-201ENST00000291074 DNASE1L3Q13609 305 aa18.87■□□□□ 0.61
VPS53-201ENST00000291074 SSX1Q16384 188 aa18.87■□□□□ 0.61
VPS53-201ENST00000291074 VRK2Q86Y07 508 aa18.87■□□□□ 0.61
VPS53-201ENST00000291074 NUP43Q8NFH3 380 aa18.87■□□□□ 0.61
VPS53-201ENST00000291074 OR56A1Q8NGH5 318 aa18.87■□□□□ 0.61
VPS53-201ENST00000291074 PPP1R14BQ96C90 147 aa18.87■□□□□ 0.61
VPS53-201ENST00000291074 ZNF681Q96N22 645 aa18.87■□□□□ 0.61
VPS53-201ENST00000291074 CDADC1Q9BWV3 514 aa18.87■□□□□ 0.61
VPS53-201ENST00000291074 KLHL25Q9H0H3 589 aa18.87■□□□□ 0.61
VPS53-201ENST00000291074 SNX7Q9UNH6 387 aa18.87■□□□□ 0.61
VPS53-201ENST00000291074 ARHGAP33O14559 1287 aa18.86■□□□□ 0.61
VPS53-201ENST00000291074 PRKYO43930 277 aa18.86■□□□□ 0.61
VPS53-201ENST00000291074 LIMK1P53667 647 aa18.86■□□□□ 0.61
VPS53-201ENST00000291074 ZNF91Q05481 1191 aa18.86■□□□□ 0.61
VPS53-201ENST00000291074 NIPAL1Q6NVV3 410 aa18.86■□□□□ 0.61
VPS53-201ENST00000291074 BHLHB9Q6PI77 547 aa18.86■□□□□ 0.61
VPS53-201ENST00000291074 FAM92BQ6ZTR7 304 aa18.86■□□□□ 0.61
VPS53-201ENST00000291074 MORN4Q8NDC4 146 aa18.86■□□□□ 0.61
VPS53-201ENST00000291074 ZCCHC10Q8TBK6 192 aa18.86■□□□□ 0.61
VPS53-201ENST00000291074 ELP4Q96EB1 424 aa18.86■□□□□ 0.61
VPS53-201ENST00000291074 SIPA1Q96FS4 1042 aa18.86■□□□□ 0.61
VPS53-201ENST00000291074 TMEM168Q9H0V1 697 aa18.86■□□□□ 0.61
VPS53-201ENST00000291074 EMC8O43402 210 aa18.86■□□□□ 0.61
VPS53-201ENST00000291074 ACTR1BP42025 376 aa18.86■□□□□ 0.61
VPS53-201ENST00000291074 ACTR1AP61163 376 aa18.86■□□□□ 0.61
VPS53-201ENST00000291074 STXBP1P61764 594 aaKnown RBP18.86■□□□□ 0.61
VPS53-201ENST00000291074 OLR1P78380 273 aa18.86■□□□□ 0.61
VPS53-201ENST00000291074 C11orf74Q86VG3 221 aa18.86■□□□□ 0.61
VPS53-201ENST00000291074 ATCAYQ86WG3 371 aa18.86■□□□□ 0.61
VPS53-201ENST00000291074 SIMC1Q8NDZ2 872 aa18.86■□□□□ 0.61
VPS53-201ENST00000291074 PRRC1Q96M27 445 aa18.86■□□□□ 0.61
VPS53-201ENST00000291074 DACH2Q96NX9 599 aa18.86■□□□□ 0.61
VPS53-201ENST00000291074 SLC38A1Q9H2H9 487 aa18.86■□□□□ 0.61
VPS53-201ENST00000291074 POLMQ9NP87 494 aaPredicted RBP18.86■□□□□ 0.61
VPS53-201ENST00000291074 TRNAU1APQ9NX07 287 aaKnown RBP18.86■□□□□ 0.61
VPS53-201ENST00000291074 OR6C2Q9NZP2 312 aa18.86■□□□□ 0.61
VPS53-201ENST00000291074 HEBP2Q9Y5Z4 205 aa18.86■□□□□ 0.61
VPS53-201ENST00000291074 BRWD1Q9NSI6 2320 aa18.85■□□□□ 0.61
VPS53-201ENST00000291074 DNAJB6O75190 326 aa18.85■□□□□ 0.61
VPS53-201ENST00000291074 SLITRK5O94991 958 aa18.85■□□□□ 0.61
VPS53-201ENST00000291074 MAGP20916 626 aa18.85■□□□□ 0.61
VPS53-201ENST00000291074 ACSL1P33121 698 aa18.85■□□□□ 0.61
VPS53-201ENST00000291074 MPIP34949 423 aa18.85■□□□□ 0.61
VPS53-201ENST00000291074 PRR5P85299 388 aa18.85■□□□□ 0.61
VPS53-201ENST00000291074 TMEM184AQ6ZMB5 413 aa18.85■□□□□ 0.61
VPS53-201ENST00000291074 SHISA5Q8N114 240 aa18.85■□□□□ 0.61
VPS53-201ENST00000291074 SLC34A3Q8N130 599 aa18.85■□□□□ 0.61
VPS53-201ENST00000291074 OPALINQ96PE5 141 aa18.85■□□□□ 0.61
VPS53-201ENST00000291074 SPATA5L1Q9BVQ7 753 aa18.85■□□□□ 0.61
VPS53-201ENST00000291074 MMP27Q9H306 513 aa18.85■□□□□ 0.61
VPS53-201ENST00000291074 SRMSQ9H3Y6 488 aa18.85■□□□□ 0.61
VPS53-201ENST00000291074 KLF15Q9UIH9 416 aa18.85■□□□□ 0.61
VPS53-201ENST00000291074 NR2F6P10588 404 aa18.85■□□□□ 0.61
VPS53-201ENST00000291074 PIPP12273 146 aaPredicted RBP18.85■□□□□ 0.61
VPS53-201ENST00000291074 CD40LGP29965 261 aa18.85■□□□□ 0.61
VPS53-201ENST00000291074 CTHP32929 405 aa18.85■□□□□ 0.61
VPS53-201ENST00000291074 SOX3P41225 446 aa18.85■□□□□ 0.61
VPS53-201ENST00000291074 HOXC5Q00444 222 aa18.85■□□□□ 0.61
VPS53-201ENST00000291074 TMEM201Q5SNT2 666 aa18.85■□□□□ 0.61
VPS53-201ENST00000291074 C6orf132Q5T0Z8 1188 aa18.85■□□□□ 0.61
VPS53-201ENST00000291074 ACSM5Q6NUN0 579 aa18.85■□□□□ 0.61
VPS53-201ENST00000291074 FAM111BQ6SJ93 734 aa18.85■□□□□ 0.61
VPS53-201ENST00000291074 PAQR6Q6TCH4 344 aa18.85■□□□□ 0.61
VPS53-201ENST00000291074 CYP4Z2PQ8N1L4 340 aa18.85■□□□□ 0.61
VPS53-201ENST00000291074 SRFBP1Q8NEF9 429 aaKnown RBP18.85■□□□□ 0.61
VPS53-201ENST00000291074 KBTBD8Q8NFY9 601 aa18.85■□□□□ 0.61
VPS53-201ENST00000291074 COL26A1Q96A83 441 aa18.85■□□□□ 0.61
VPS53-201ENST00000291074 TSSK6Q9BXA6 273 aa18.85■□□□□ 0.61
VPS53-201ENST00000291074 PLA2G12AQ9BZM1 189 aa18.85■□□□□ 0.61
VPS53-201ENST00000291074 TMEM74BQ9NUR3 256 aa18.85■□□□□ 0.61
VPS53-201ENST00000291074 GIMAP4Q9NUV9 329 aa18.85■□□□□ 0.61
VPS53-201ENST00000291074 CLEC1BQ9P126 229 aa18.85■□□□□ 0.61
VPS53-201ENST00000291074 ZNF780BQ9Y6R6 833 aa18.85■□□□□ 0.61
VPS53-201ENST00000291074 A0A0G2JPF8 293 aa18.84■□□□□ 0.61
VPS53-201ENST00000291074 HNRNPCL2B2RXH8 293 aa18.84■□□□□ 0.61
VPS53-201ENST00000291074 HNRNPCL3B7ZW38 293 aa18.84■□□□□ 0.61
VPS53-201ENST00000291074 P2RX6O15547 441 aa18.84■□□□□ 0.61
VPS53-201ENST00000291074 TLX2O43763 284 aaPredicted RBP18.84■□□□□ 0.61
VPS53-201ENST00000291074 KIAA0513O60268 411 aa18.84■□□□□ 0.61
VPS53-201ENST00000291074 ZIC2O95409 532 aaPredicted RBP18.84■□□□□ 0.61
VPS53-201ENST00000291074 HNRNPCL4P0DMR1 293 aa18.84■□□□□ 0.61
VPS53-201ENST00000291074 ANXA11P50995 505 aaKnown RBP18.84■□□□□ 0.61
VPS53-201ENST00000291074 GINS1Q14691 196 aa18.84■□□□□ 0.61
VPS53-201ENST00000291074 ZNF311Q5JNZ3 666 aa18.84■□□□□ 0.61
VPS53-201ENST00000291074 MTSS1LQ765P7 747 aa18.84■□□□□ 0.61
VPS53-201ENST00000291074 NRROSQ86YC3 692 aa18.84■□□□□ 0.61
VPS53-201ENST00000291074 OR4N5Q8IXE1 308 aa18.84■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms