RNA–Protein interactions for RNA: ENST00000636147.1

CLN3-244, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 3,832 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-244ENST00000636147 ZNF740Q8NDX6 193 aa10.47□□□□□ -0.73
CLN3-244ENST00000636147 OR4M2Q8NGB6 313 aa10.47□□□□□ -0.73
CLN3-244ENST00000636147 OR52E4Q8NGH9 312 aa10.47□□□□□ -0.73
CLN3-244ENST00000636147 BBS10Q8TAM1 723 aa10.47□□□□□ -0.73
CLN3-244ENST00000636147 PDCD10Q9BUL8 212 aa10.47□□□□□ -0.73
CLN3-244ENST00000636147 BHLHE41Q9C0J9 482 aaPredicted RBP10.47□□□□□ -0.73
CLN3-244ENST00000636147 ATP13A2Q9NQ11 1180 aa10.47□□□□□ -0.73
CLN3-244ENST00000636147 SLAMF7Q9NQ25 335 aa10.47□□□□□ -0.73
CLN3-244ENST00000636147 MGAT4CQ9UBM8 478 aa10.47□□□□□ -0.73
CLN3-244ENST00000636147 RASD1Q9Y272 281 aa10.47□□□□□ -0.73
CLN3-244ENST00000636147 PROM1O43490 865 aa10.47□□□□□ -0.73
CLN3-244ENST00000636147 PAHP00439 452 aa10.47□□□□□ -0.73
CLN3-244ENST00000636147 ELNP15502 786 aa10.47□□□□□ -0.73
CLN3-244ENST00000636147 GMFBP60983 142 aa10.47□□□□□ -0.73
CLN3-244ENST00000636147 TGM3Q08188 693 aa10.47□□□□□ -0.73
CLN3-244ENST00000636147 ARSKQ6UWY0 536 aa10.47□□□□□ -0.73
CLN3-244ENST00000636147 CHST9Q7L1S5 443 aa10.47□□□□□ -0.73
CLN3-244ENST00000636147 ABI3BPQ7Z7G0 1075 aa10.47□□□□□ -0.73
CLN3-244ENST00000636147 FAM124AQ86V42 546 aa10.47□□□□□ -0.73
CLN3-244ENST00000636147 SLITRK4Q8IW52 837 aa10.47□□□□□ -0.73
CLN3-244ENST00000636147 TBC1D19Q8N5T2 526 aa10.47□□□□□ -0.73
CLN3-244ENST00000636147 SPRYD4Q8WW59 207 aaPredicted RBP10.47□□□□□ -0.73
CLN3-244ENST00000636147 DPF3Q92784 378 aa10.47□□□□□ -0.73
CLN3-244ENST00000636147 TIFAQ96CG3 184 aa10.47□□□□□ -0.73
CLN3-244ENST00000636147 KATNB1Q9BVA0 655 aa10.47□□□□□ -0.73
CLN3-244ENST00000636147 PCNTO95613 3336 aa10.47□□□□□ -0.73
CLN3-244ENST00000636147 PCDH8O95206 1070 aa10.47□□□□□ -0.73
CLN3-244ENST00000636147 ALDOBP05062 364 aa10.47□□□□□ -0.73
CLN3-244ENST00000636147 PEPDP12955 493 aa10.47□□□□□ -0.73
CLN3-244ENST00000636147 GSTM3P21266 225 aa10.47□□□□□ -0.73
CLN3-244ENST00000636147 ETV6P41212 452 aa10.47□□□□□ -0.73
CLN3-244ENST00000636147 SRP9P49458 86 aaKnown RBP10.47□□□□□ -0.73
CLN3-244ENST00000636147 IRF3Q14653 427 aa10.47□□□□□ -0.73
CLN3-244ENST00000636147 GRIN2CQ14957 1233 aa10.47□□□□□ -0.73
CLN3-244ENST00000636147 SYPL1Q16563 259 aa10.47□□□□□ -0.73
CLN3-244ENST00000636147 ARSIQ5FYB1 569 aa10.47□□□□□ -0.73
CLN3-244ENST00000636147 RNF44Q7L0R7 432 aa10.47□□□□□ -0.73
CLN3-244ENST00000636147 TOR1AIP2Q8NFQ8 470 aa10.47□□□□□ -0.73
CLN3-244ENST00000636147 ARL6Q9H0F7 186 aa10.47□□□□□ -0.73
CLN3-244ENST00000636147 ASAH2Q9NR71 780 aa10.47□□□□□ -0.73
CLN3-244ENST00000636147 IMP3Q9NV31 184 aaKnown RBP10.47□□□□□ -0.73
CLN3-244ENST00000636147 MARK1Q9P0L2 795 aa10.47□□□□□ -0.73
CLN3-244ENST00000636147 MLXQ9UH92 298 aa10.47□□□□□ -0.73
CLN3-244ENST00000636147 H7BY64 318 aa10.46□□□□□ -0.73
CLN3-244ENST00000636147 RPLP2P05387 115 aaKnown RBP10.46□□□□□ -0.73
CLN3-244ENST00000636147 SYPP08247 313 aa10.46□□□□□ -0.73
CLN3-244ENST00000636147 LAMP2P13473 410 aa10.46□□□□□ -0.73
CLN3-244ENST00000636147 PSMA6P60900 246 aaKnown RBP10.46□□□□□ -0.73
CLN3-244ENST00000636147 GNA13Q14344 377 aa10.46□□□□□ -0.73
CLN3-244ENST00000636147 GPR68Q15743 365 aa10.46□□□□□ -0.73
CLN3-244ENST00000636147 MPPE1Q53F39 396 aa10.46□□□□□ -0.73
CLN3-244ENST00000636147 PRAMEF14Q5SWL7 426 aa10.46□□□□□ -0.73
CLN3-244ENST00000636147 PLEKHS1Q5SXH7 462 aa10.46□□□□□ -0.73
CLN3-244ENST00000636147 PRPF38BQ5VTL8 546 aaKnown RBP10.46□□□□□ -0.73
CLN3-244ENST00000636147 PRAMEF13Q5VWM6 474 aa10.46□□□□□ -0.73
CLN3-244ENST00000636147 LIMS2Q7Z4I7 341 aa10.46□□□□□ -0.73
CLN3-244ENST00000636147 CCDC116Q8IYX3 515 aa10.46□□□□□ -0.73
CLN3-244ENST00000636147 MMP21Q8N119 569 aa10.46□□□□□ -0.73
CLN3-244ENST00000636147 HORMAD2Q8N7B1 307 aa10.46□□□□□ -0.73
CLN3-244ENST00000636147 OR52I1Q8NGK6 324 aa10.46□□□□□ -0.73
CLN3-244ENST00000636147 CYB5D2Q8WUJ1 264 aa10.46□□□□□ -0.73
CLN3-244ENST00000636147 SLC5A11Q8WWX8 675 aa10.46□□□□□ -0.73
CLN3-244ENST00000636147 PRAP1Q96NZ9 151 aa10.46□□□□□ -0.73
CLN3-244ENST00000636147 BARHL1Q9BZE3 327 aa10.46□□□□□ -0.73
CLN3-244ENST00000636147 PIGUQ9H490 435 aa10.46□□□□□ -0.73
CLN3-244ENST00000636147 TRIM36Q9NQ86 728 aa10.46□□□□□ -0.73
CLN3-244ENST00000636147 UBR3Q6ZT12 1888 aa10.46□□□□□ -0.73
CLN3-244ENST00000636147 CKAP5Q14008 2032 aa10.46□□□□□ -0.73
CLN3-244ENST00000636147 ALPK2Q86TB3 2170 aa10.46□□□□□ -0.73
CLN3-244ENST00000636147 RNASET2O00584 256 aaKnown RBP10.46□□□□□ -0.73
CLN3-244ENST00000636147 PI15O43692 258 aa10.46□□□□□ -0.73
CLN3-244ENST00000636147 FMO6PO60774 539 aa10.46□□□□□ -0.73
CLN3-244ENST00000636147 SLC19A2O60779 497 aa10.46□□□□□ -0.73
CLN3-244ENST00000636147 ETHE1O95571 254 aa10.46□□□□□ -0.73
CLN3-244ENST00000636147 MT-ND4P03905 459 aa10.46□□□□□ -0.73
CLN3-244ENST00000636147 TRAPPC2P0DI81 140 aa10.46□□□□□ -0.73
CLN3-244ENST00000636147 TRAPPC2BP0DI82 140 aa10.46□□□□□ -0.73
CLN3-244ENST00000636147 C1GALT1C1LP0DN25 315 aa10.46□□□□□ -0.73
CLN3-244ENST00000636147 GNSP15586 552 aa10.46□□□□□ -0.73
CLN3-244ENST00000636147 VIPR1P32241 457 aa10.46□□□□□ -0.73
CLN3-244ENST00000636147 RPL35P42766 123 aaKnown RBP10.46□□□□□ -0.73
CLN3-244ENST00000636147 GCGRP47871 477 aa10.46□□□□□ -0.73
CLN3-244ENST00000636147 FLT3LGP49771 235 aa10.46□□□□□ -0.73
CLN3-244ENST00000636147 OC90Q02509 493 aaPredicted RBP10.46□□□□□ -0.73
CLN3-244ENST00000636147 PLK5Q496M5 336 aa10.46□□□□□ -0.73
CLN3-244ENST00000636147 YIF1BQ5BJH7 314 aa10.46□□□□□ -0.73
CLN3-244ENST00000636147 PLBD1Q6P4A8 553 aa10.46□□□□□ -0.73
CLN3-244ENST00000636147 SERINC5Q86VE9 423 aa10.46□□□□□ -0.73
CLN3-244ENST00000636147 CPOQ8IVL8 374 aa10.46□□□□□ -0.73
CLN3-244ENST00000636147 CLDN22Q8N7P3 220 aa10.46□□□□□ -0.73
CLN3-244ENST00000636147 BOLLQ8N9W6 283 aaKnown RBP10.46□□□□□ -0.73
CLN3-244ENST00000636147 CHAC2Q8WUX2 184 aa10.46□□□□□ -0.73
CLN3-244ENST00000636147 RELTQ969Z4 430 aa10.46□□□□□ -0.73
CLN3-244ENST00000636147 ARPC5LQ9BPX5 153 aa10.46□□□□□ -0.73
CLN3-244ENST00000636147 GPN1Q9HCN4 374 aaPredicted RBP10.46□□□□□ -0.73
CLN3-244ENST00000636147 LHX3Q9UBR4 397 aa10.46□□□□□ -0.73
CLN3-244ENST00000636147 ABT1Q9ULW3 272 aaKnown RBP10.46□□□□□ -0.73
CLN3-244ENST00000636147 CACNG2Q9Y698 323 aa10.46□□□□□ -0.73
CLN3-244ENST00000636147 GABRPO00591 440 aa10.46□□□□□ -0.74
CLN3-244ENST00000636147 PRODHO43272 600 aa10.46□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 126.3 ms