RNA–Protein interactions for RNA: ENST00000628023.3

CLN3-239, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,183 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-239ENST00000628023 CEP70Q8NHQ1 597 aa16.77■□□□□ 0.28
CLN3-239ENST00000628023 NUBPLQ8TB37 319 aa16.77■□□□□ 0.28
CLN3-239ENST00000628023 ZNF675Q8TD23 568 aa16.77■□□□□ 0.28
CLN3-239ENST00000628023 ACTRT2Q8TDY3 377 aa16.77■□□□□ 0.28
CLN3-239ENST00000628023 SSC4DQ8WTU2 575 aa16.77■□□□□ 0.28
CLN3-239ENST00000628023 RNF32Q9H0A6 362 aa16.77■□□□□ 0.28
CLN3-239ENST00000628023 GLIPR2Q9H4G4 154 aa16.77■□□□□ 0.28
CLN3-239ENST00000628023 LUZP4Q9P127 313 aa16.77■□□□□ 0.28
CLN3-239ENST00000628023 MYOTQ9UBF9 498 aa16.77■□□□□ 0.28
CLN3-239ENST00000628023 ATP6V1HQ9UI12 483 aa16.77■□□□□ 0.28
CLN3-239ENST00000628023 CFL2Q9Y281 166 aa16.77■□□□□ 0.28
CLN3-239ENST00000628023 B3GNT3Q9Y2A9 372 aa16.77■□□□□ 0.28
CLN3-239ENST00000628023 CPAMD8Q8IZJ3 1885 aa16.77■□□□□ 0.27
CLN3-239ENST00000628023 ZNF195O14628 629 aa16.76■□□□□ 0.27
CLN3-239ENST00000628023 OR2J2O76002 312 aa16.76■□□□□ 0.27
CLN3-239ENST00000628023 SLITRK5O94991 958 aa16.76■□□□□ 0.27
CLN3-239ENST00000628023 ALDOCP09972 364 aaKnown RBP16.76■□□□□ 0.27
CLN3-239ENST00000628023 SSR4P51571 173 aa16.76■□□□□ 0.27
CLN3-239ENST00000628023 AQP5P55064 265 aa16.76■□□□□ 0.27
CLN3-239ENST00000628023 MANFP55145 182 aaKnown RBP16.76■□□□□ 0.27
CLN3-239ENST00000628023 CLDN8P56748 225 aa16.76■□□□□ 0.27
CLN3-239ENST00000628023 TUBA3CQ13748 450 aa16.76■□□□□ 0.27
CLN3-239ENST00000628023 TLR1Q15399 786 aa16.76■□□□□ 0.27
CLN3-239ENST00000628023 PGS1Q32NB8 556 aa16.76■□□□□ 0.27
CLN3-239ENST00000628023 TUBA3EQ6PEY2 450 aa16.76■□□□□ 0.27
CLN3-239ENST00000628023 EPGNQ6UW88 154 aa16.76■□□□□ 0.27
CLN3-239ENST00000628023 TMEM107Q6UX40 140 aa16.76■□□□□ 0.27
CLN3-239ENST00000628023 C16orf47Q6ZP98 133 aaPredicted RBP16.76■□□□□ 0.27
CLN3-239ENST00000628023 ASB15Q8WXK1 588 aa16.76■□□□□ 0.27
CLN3-239ENST00000628023 HAS2Q92819 552 aa16.76■□□□□ 0.27
CLN3-239ENST00000628023 THOC1Q96FV9 657 aaKnown RBP16.76■□□□□ 0.27
CLN3-239ENST00000628023 MAELQ96JY0 434 aaKnown RBP16.76■□□□□ 0.27
CLN3-239ENST00000628023 AMDHD1Q96NU7 426 aa16.76■□□□□ 0.27
CLN3-239ENST00000628023 OR52B2Q96RD2 323 aa16.76■□□□□ 0.27
CLN3-239ENST00000628023 WWTR1Q9GZV5 400 aa16.76■□□□□ 0.27
CLN3-239ENST00000628023 TCF7L2Q9NQB0 619 aa16.76■□□□□ 0.27
CLN3-239ENST00000628023 AIG1Q9NVV5 245 aa16.76■□□□□ 0.27
CLN3-239ENST00000628023 YARS2Q9Y2Z4 477 aaKnown RBP16.76■□□□□ 0.27
CLN3-239ENST00000628023 CSAG2Q9Y5P2 127 aa16.76■□□□□ 0.27
CLN3-239ENST00000628023 C2orf92A0A1B0GVN3 265 aa16.75■□□□□ 0.27
CLN3-239ENST00000628023 EDF1O60869 148 aaKnown RBP16.75■□□□□ 0.27
CLN3-239ENST00000628023 BCAS2O75934 225 aaPredicted RBP16.75■□□□□ 0.27
CLN3-239ENST00000628023 CLPSP04118 112 aa16.75■□□□□ 0.27
CLN3-239ENST00000628023 VIMP08670 466 aaKnown RBP16.75■□□□□ 0.27
CLN3-239ENST00000628023 EFNA1P20827 205 aaPredicted RBP16.75■□□□□ 0.27
CLN3-239ENST00000628023 MC3RP41968 323 aa16.75■□□□□ 0.27
CLN3-239ENST00000628023 CYB561P49447 251 aa16.75■□□□□ 0.27
CLN3-239ENST00000628023 NME5P56597 212 aa16.75■□□□□ 0.27
CLN3-239ENST00000628023 MGAT2Q10469 447 aa16.75■□□□□ 0.27
CLN3-239ENST00000628023 ZNF169Q14929 603 aaPredicted RBP16.75■□□□□ 0.27
CLN3-239ENST00000628023 EBPQ15125 230 aaKnown RBP16.75■□□□□ 0.27
CLN3-239ENST00000628023 TRMT12Q53H54 448 aaKnown RBP16.75■□□□□ 0.27
CLN3-239ENST00000628023 ZNF551Q7Z340 670 aaPredicted RBP16.75■□□□□ 0.27
CLN3-239ENST00000628023 SZRD1Q7Z422 152 aa16.75■□□□□ 0.27
CLN3-239ENST00000628023 HORMAD2Q8N7B1 307 aa16.75■□□□□ 0.27
CLN3-239ENST00000628023 Q8NA96 180 aa16.75■□□□□ 0.27
CLN3-239ENST00000628023 CATSPER1Q8NEC5 780 aa16.75■□□□□ 0.27
CLN3-239ENST00000628023 C16orf52Q8NHV5 167 aa16.75■□□□□ 0.27
CLN3-239ENST00000628023 SLC22A8Q8TCC7 542 aa16.75■□□□□ 0.27
CLN3-239ENST00000628023 ERP27Q96DN0 273 aa16.75■□□□□ 0.27
CLN3-239ENST00000628023 MAGED4Q96JG8 741 aa16.75■□□□□ 0.27
CLN3-239ENST00000628023 MARK4Q96L34 752 aa16.75■□□□□ 0.27
CLN3-239ENST00000628023 ZBTB18Q99592 522 aa16.75■□□□□ 0.27
CLN3-239ENST00000628023 NPHS2Q9NP85 383 aa16.75■□□□□ 0.27
CLN3-239ENST00000628023 DDX18Q9NVP1 670 aaKnown RBP16.75■□□□□ 0.27
CLN3-239ENST00000628023 PRODH2Q9UF12 536 aa16.75■□□□□ 0.27
CLN3-239ENST00000628023 ICE1Q9Y2F5 2266 aa16.75■□□□□ 0.27
CLN3-239ENST00000628023 SHANK1Q9Y566 2161 aa16.74■□□□□ 0.27
CLN3-239ENST00000628023 TRAV17A0A0B4J275 112 aa16.74■□□□□ 0.27
CLN3-239ENST00000628023 A8MVJ9 347 aa16.74■□□□□ 0.27
CLN3-239ENST00000628023 COQ9O75208 318 aa16.74■□□□□ 0.27
CLN3-239ENST00000628023 CBX7O95931 251 aa16.74■□□□□ 0.27
CLN3-239ENST00000628023 LAMP1P11279 417 aa16.74■□□□□ 0.27
CLN3-239ENST00000628023 IDO1P14902 403 aa16.74■□□□□ 0.27
CLN3-239ENST00000628023 MDH1P40925 334 aaKnown RBP16.74■□□□□ 0.27
CLN3-239ENST00000628023 IDH3AP50213 366 aa16.74■□□□□ 0.27
CLN3-239ENST00000628023 TNFSF10P50591 281 aa16.74■□□□□ 0.27
CLN3-239ENST00000628023 CLNS1AP54105 237 aaKnown RBP16.74■□□□□ 0.27
CLN3-239ENST00000628023 C21orf58P58505 322 aa16.74■□□□□ 0.27
CLN3-239ENST00000628023 ZNF155Q12901 538 aaPredicted RBP16.74■□□□□ 0.27
CLN3-239ENST00000628023 OR1C1Q15619 314 aa16.74■□□□□ 0.27
CLN3-239ENST00000628023 LSM12Q3MHD2 195 aaKnown RBP16.74■□□□□ 0.27
CLN3-239ENST00000628023 Q6ZS92 163 aa16.74■□□□□ 0.27
CLN3-239ENST00000628023 ARMC10Q8N2F6 343 aa16.74■□□□□ 0.27
CLN3-239ENST00000628023 NATD1Q8N6N6 113 aa16.74■□□□□ 0.27
CLN3-239ENST00000628023 ZNF615Q8N8J6 731 aa16.74■□□□□ 0.27
CLN3-239ENST00000628023 OR7G2Q8NG99 324 aa16.74■□□□□ 0.27
CLN3-239ENST00000628023 PRR7Q8TB68 274 aa16.74■□□□□ 0.27
CLN3-239ENST00000628023 CTHRC1Q96CG8 243 aa16.74■□□□□ 0.27
CLN3-239ENST00000628023 C5orf34Q96MH7 638 aa16.74■□□□□ 0.27
CLN3-239ENST00000628023 RASL10BQ96S79 203 aa16.74■□□□□ 0.27
CLN3-239ENST00000628023 DUSP26Q9BV47 211 aa16.74■□□□□ 0.27
CLN3-239ENST00000628023 BHLHE41Q9C0J9 482 aaPredicted RBP16.74■□□□□ 0.27
CLN3-239ENST00000628023 ANKRA2Q9H9E1 313 aa16.74■□□□□ 0.27
CLN3-239ENST00000628023 ACSS1Q9NUB1 689 aaPredicted RBP16.74■□□□□ 0.27
CLN3-239ENST00000628023 HPF1Q9NWY4 346 aa16.74■□□□□ 0.27
CLN3-239ENST00000628023 LRFN1Q9P244 771 aa16.74■□□□□ 0.27
CLN3-239ENST00000628023 PLEKHB1Q9UF11 243 aaPredicted RBP16.74■□□□□ 0.27
CLN3-239ENST00000628023 ZNF639Q9UID6 485 aa16.74■□□□□ 0.27
CLN3-239ENST00000628023 ERVK-11Q9UQG0 969 aa16.74■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 57.4 ms