RNA–Protein interactions for RNA: ENST00000618700.4

UPF3A-211, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 1,210 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-211ENST00000618700 THOC3Q96J01 351 aaKnown RBP18.32■□□□□ 0.52
UPF3A-211ENST00000618700 CCDC115Q96NT0 180 aa18.32■□□□□ 0.52
UPF3A-211ENST00000618700 OR52E6Q96RD3 313 aa18.32■□□□□ 0.52
UPF3A-211ENST00000618700 NTMQ9P121 344 aa18.32■□□□□ 0.52
UPF3A-211ENST00000618700 BTNL2Q9UIR0 455 aa18.32■□□□□ 0.52
UPF3A-211ENST00000618700 ERVK-11Q9UQG0 969 aa18.32■□□□□ 0.52
UPF3A-211ENST00000618700 OR6C76A6NM76 312 aa18.31■□□□□ 0.52
UPF3A-211ENST00000618700 UPK1AO00322 258 aa18.31■□□□□ 0.52
UPF3A-211ENST00000618700 FCHO1O14526 889 aa18.31■□□□□ 0.52
UPF3A-211ENST00000618700 SLC22A2O15244 555 aa18.31■□□□□ 0.52
UPF3A-211ENST00000618700 PRKNO60260 465 aaPredicted RBP18.31■□□□□ 0.52
UPF3A-211ENST00000618700 CCDC22O60826 627 aa18.31■□□□□ 0.52
UPF3A-211ENST00000618700 CAPN3P20807 821 aa18.31■□□□□ 0.52
UPF3A-211ENST00000618700 ITGA3P26006 1051 aa18.31■□□□□ 0.52
UPF3A-211ENST00000618700 ADSLP30566 484 aaPredicted RBP18.31■□□□□ 0.52
UPF3A-211ENST00000618700 GPC1P35052 558 aa18.31■□□□□ 0.52
UPF3A-211ENST00000618700 KCNK10P57789 538 aa18.31■□□□□ 0.52
UPF3A-211ENST00000618700 KLF10Q13118 480 aa18.31■□□□□ 0.52
UPF3A-211ENST00000618700 RNF111Q6ZNA4 994 aa18.31■□□□□ 0.52
UPF3A-211ENST00000618700 ARMC10Q8N2F6 343 aa18.31■□□□□ 0.52
UPF3A-211ENST00000618700 OR52R1Q8NGF1 315 aa18.31■□□□□ 0.52
UPF3A-211ENST00000618700 BRIX1Q8TDN6 353 aaKnown RBP18.31■□□□□ 0.52
UPF3A-211ENST00000618700 VPS33AQ96AX1 596 aa18.31■□□□□ 0.52
UPF3A-211ENST00000618700 SPDL1Q96EA4 605 aa18.31■□□□□ 0.52
UPF3A-211ENST00000618700 MYLK2Q9H1R3 596 aa18.31■□□□□ 0.52
UPF3A-211ENST00000618700 OR10A5Q9H207 317 aa18.31■□□□□ 0.52
UPF3A-211ENST00000618700 CXorf36Q9H7Y0 433 aa18.31■□□□□ 0.52
UPF3A-211ENST00000618700 ANKRA2Q9H9E1 313 aa18.31■□□□□ 0.52
UPF3A-211ENST00000618700 SERHLQ9NQF3 203 aa18.31■□□□□ 0.52
UPF3A-211ENST00000618700 SDAD1Q9NVU7 687 aaKnown RBP eCLIP18.31■□□□□ 0.52
UPF3A-211ENST00000618700 TAS2R9Q9NYW1 312 aa18.31■□□□□ 0.52
UPF3A-211ENST00000618700 C19orf53Q9UNZ5 99 aaPredicted RBP18.31■□□□□ 0.52
UPF3A-211ENST00000618700 DOCK10Q96BY6 2186 aa18.31■□□□□ 0.52
UPF3A-211ENST00000618700 DYTNA2CJ06 578 aa18.3■□□□□ 0.52
UPF3A-211ENST00000618700 ASPDHA6ND91 283 aa18.3■□□□□ 0.52
UPF3A-211ENST00000618700 CCDC154A6NI56 674 aa18.3■□□□□ 0.52
UPF3A-211ENST00000618700 TMEM200CA6NKL6 621 aa18.3■□□□□ 0.52
UPF3A-211ENST00000618700 NR5A2O00482 541 aa18.3■□□□□ 0.52
UPF3A-211ENST00000618700 CFLARO15519 480 aa18.3■□□□□ 0.52
UPF3A-211ENST00000618700 PRAMEF2O60811 474 aa18.3■□□□□ 0.52
UPF3A-211ENST00000618700 BCAS2O75934 225 aaPredicted RBP18.3■□□□□ 0.52
UPF3A-211ENST00000618700 SOX11P35716 441 aa18.3■□□□□ 0.52
UPF3A-211ENST00000618700 CCL11P51671 97 aa18.3■□□□□ 0.52
UPF3A-211ENST00000618700 LRRC74AQ0VAA2 488 aa18.3■□□□□ 0.52
UPF3A-211ENST00000618700 MYBPC3Q14896 1274 aa18.3■□□□□ 0.52
UPF3A-211ENST00000618700 EBPQ15125 230 aaKnown RBP18.3■□□□□ 0.52
UPF3A-211ENST00000618700 GKAP1Q5VSY0 366 aaPredicted RBP18.3■□□□□ 0.52
UPF3A-211ENST00000618700 TMEM64Q6YI46 380 aa18.3■□□□□ 0.52
UPF3A-211ENST00000618700 HSDL2Q6YN16 418 aa18.3■□□□□ 0.52
UPF3A-211ENST00000618700 GK5Q6ZS86 529 aa18.3■□□□□ 0.52
UPF3A-211ENST00000618700 MTDHQ86UE4 582 aaKnown RBP18.3■□□□□ 0.52
UPF3A-211ENST00000618700 ANKS4BQ8N8V4 417 aa18.3■□□□□ 0.52
UPF3A-211ENST00000618700 GOT1L1Q8NHS2 421 aaPredicted RBP18.3■□□□□ 0.52
UPF3A-211ENST00000618700 TSPEARQ8WU66 669 aa18.3■□□□□ 0.52
UPF3A-211ENST00000618700 EXTL1Q92935 676 aa18.3■□□□□ 0.52
UPF3A-211ENST00000618700 DDX18Q9NVP1 670 aaKnown RBP18.3■□□□□ 0.52
UPF3A-211ENST00000618700 CAPN7Q9Y6W3 813 aa18.3■□□□□ 0.52
UPF3A-211ENST00000618700 COQ9O75208 318 aa18.29■□□□□ 0.52
UPF3A-211ENST00000618700 ZFAND5O76080 213 aa18.29■□□□□ 0.52
UPF3A-211ENST00000618700 EMDP50402 254 aa18.29■□□□□ 0.52
UPF3A-211ENST00000618700 RNF4P78317 190 aa18.29■□□□□ 0.52
UPF3A-211ENST00000618700 VPS26BQ4G0F5 336 aa18.29■□□□□ 0.52
UPF3A-211ENST00000618700 FDCSPQ8NFU4 85 aa18.29■□□□□ 0.52
UPF3A-211ENST00000618700 OR4A15Q8NGL6 344 aa18.29■□□□□ 0.52
UPF3A-211ENST00000618700 C16orf52Q8NHV5 167 aa18.29■□□□□ 0.52
UPF3A-211ENST00000618700 NUBPLQ8TB37 319 aa18.29■□□□□ 0.52
UPF3A-211ENST00000618700 FAM120BQ96EK7 910 aaKnown RBP18.29■□□□□ 0.52
UPF3A-211ENST00000618700 NPAS2Q99743 824 aa18.29■□□□□ 0.52
UPF3A-211ENST00000618700 CCDC106Q9BWC9 280 aa18.29■□□□□ 0.52
UPF3A-211ENST00000618700 DEFB126Q9BYW3 111 aa18.29■□□□□ 0.52
UPF3A-211ENST00000618700 WWTR1Q9GZV5 400 aa18.29■□□□□ 0.52
UPF3A-211ENST00000618700 GPR83Q9NYM4 423 aa18.29■□□□□ 0.52
UPF3A-211ENST00000618700 ARMCX1Q9P291 453 aa18.29■□□□□ 0.52
UPF3A-211ENST00000618700 BCAP29Q9UHQ4 241 aa18.29■□□□□ 0.52
UPF3A-211ENST00000618700 DTX4Q9Y2E6 619 aa18.29■□□□□ 0.52
UPF3A-211ENST00000618700 A0A1W2PP18 115 aa18.28■□□□□ 0.52
UPF3A-211ENST00000618700 A6NL46 340 aa18.28■□□□□ 0.52
UPF3A-211ENST00000618700 EMC8O43402 210 aa18.28■□□□□ 0.52
UPF3A-211ENST00000618700 ABCB1P08183 1280 aaPredicted RBP18.28■□□□□ 0.52
UPF3A-211ENST00000618700 CDKN2CP42773 168 aa18.28■□□□□ 0.52
UPF3A-211ENST00000618700 POLE2P56282 527 aa18.28■□□□□ 0.52
UPF3A-211ENST00000618700 GAB1Q13480 694 aa18.28■□□□□ 0.52
UPF3A-211ENST00000618700 TLR1Q15399 786 aa18.28■□□□□ 0.52
UPF3A-211ENST00000618700 MAPKAPK3Q16644 382 aa18.28■□□□□ 0.52
UPF3A-211ENST00000618700 LINC00303Q3SY05 128 aa18.28■□□□□ 0.52
UPF3A-211ENST00000618700 IRAK1BP1Q5VVH5 260 aa18.28■□□□□ 0.52
UPF3A-211ENST00000618700 LGI4Q8N135 537 aa18.28■□□□□ 0.52
UPF3A-211ENST00000618700 SLC5A8Q8N695 610 aa18.28■□□□□ 0.52
UPF3A-211ENST00000618700 SIRT6Q8N6T7 355 aa18.28■□□□□ 0.52
UPF3A-211ENST00000618700 ZNF441Q8N8Z8 693 aa18.28■□□□□ 0.52
UPF3A-211ENST00000618700 SFXN5Q8TD22 340 aa18.28■□□□□ 0.52
UPF3A-211ENST00000618700 TTC9Q92623 222 aa18.28■□□□□ 0.52
UPF3A-211ENST00000618700 GTF2H4Q92759 462 aa18.28■□□□□ 0.52
UPF3A-211ENST00000618700 VSTM2LQ96N03 204 aa18.28■□□□□ 0.52
UPF3A-211ENST00000618700 INPP5KQ9BT40 448 aa18.28■□□□□ 0.52
UPF3A-211ENST00000618700 ZNF552Q9H707 407 aaPredicted RBP18.28■□□□□ 0.52
UPF3A-211ENST00000618700 RMND5AQ9H871 391 aa18.28■□□□□ 0.52
UPF3A-211ENST00000618700 PCDHGB4Q9UN71 923 aa18.28■□□□□ 0.52
UPF3A-211ENST00000618700 CFL2Q9Y281 166 aa18.28■□□□□ 0.52
UPF3A-211ENST00000618700 PCDHGA9Q9Y5G4 932 aaKnown RBP18.28■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms