RNA–Protein interactions for RNA: ENST00000611852.4

CCDC28A-202, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,505 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-202ENST00000611852 PRAMEF2O60811 474 aa15.32■□□□□ 0.04
CCDC28A-202ENST00000611852 CASRP41180 1078 aa15.32■□□□□ 0.04
CCDC28A-202ENST00000611852 MC3RP41968 323 aa15.32■□□□□ 0.04
CCDC28A-202ENST00000611852 CYB561P49447 251 aa15.32■□□□□ 0.04
CCDC28A-202ENST00000611852 IDH3AP50213 366 aa15.32■□□□□ 0.04
CCDC28A-202ENST00000611852 EMDP50402 254 aa15.32■□□□□ 0.04
CCDC28A-202ENST00000611852 HLCSP50747 726 aa15.32■□□□□ 0.04
CCDC28A-202ENST00000611852 SSR4P51571 173 aa15.32■□□□□ 0.04
CCDC28A-202ENST00000611852 AQP5P55064 265 aa15.32■□□□□ 0.04
CCDC28A-202ENST00000611852 OC90Q02509 493 aaPredicted RBP15.32■□□□□ 0.04
CCDC28A-202ENST00000611852 ZNF169Q14929 603 aaPredicted RBP15.32■□□□□ 0.04
CCDC28A-202ENST00000611852 OR1C1Q15619 314 aa15.32■□□□□ 0.04
CCDC28A-202ENST00000611852 TMEM198Q66K66 360 aa15.32■□□□□ 0.04
CCDC28A-202ENST00000611852 SPINK14Q6IE38 97 aa15.32■□□□□ 0.04
CCDC28A-202ENST00000611852 TMEM107Q6UX40 140 aa15.32■□□□□ 0.04
CCDC28A-202ENST00000611852 CAMKMTQ7Z624 323 aa15.32■□□□□ 0.04
CCDC28A-202ENST00000611852 TMEM156Q8N614 296 aa15.32■□□□□ 0.04
CCDC28A-202ENST00000611852 ZNF441Q8N8Z8 693 aa15.32■□□□□ 0.04
CCDC28A-202ENST00000611852 MDS2Q8NDY4 140 aa15.32■□□□□ 0.04
CCDC28A-202ENST00000611852 ZFP28Q8NHY6 868 aa15.32■□□□□ 0.04
CCDC28A-202ENST00000611852 ADIPOR1Q96A54 375 aa15.32■□□□□ 0.04
CCDC28A-202ENST00000611852 DPY30Q9C005 99 aa15.32■□□□□ 0.04
CCDC28A-202ENST00000611852 ATAD3AQ9NVI7 634 aa15.32■□□□□ 0.04
CCDC28A-202ENST00000611852 LRFN1Q9P244 771 aa15.32■□□□□ 0.04
CCDC28A-202ENST00000611852 A0A087WV62 115 aa15.31■□□□□ 0.04
CCDC28A-202ENST00000611852 TRAV17A0A0B4J275 112 aa15.31■□□□□ 0.04
CCDC28A-202ENST00000611852 BCAS2O75934 225 aaPredicted RBP15.31■□□□□ 0.04
CCDC28A-202ENST00000611852 NEURL1O76050 574 aa15.31■□□□□ 0.04
CCDC28A-202ENST00000611852 GPX3P22352 226 aa15.31■□□□□ 0.04
CCDC28A-202ENST00000611852 MANFP55145 182 aaKnown RBP15.31■□□□□ 0.04
CCDC28A-202ENST00000611852 HSPB3Q12988 150 aa15.31■□□□□ 0.04
CCDC28A-202ENST00000611852 PIGGQ5H8A4 983 aa15.31■□□□□ 0.04
CCDC28A-202ENST00000611852 ACAD11Q709F0 780 aa15.31■□□□□ 0.04
CCDC28A-202ENST00000611852 ZNF227Q86WZ6 799 aa15.31■□□□□ 0.04
CCDC28A-202ENST00000611852 OR2L13Q8N349 312 aa15.31■□□□□ 0.04
CCDC28A-202ENST00000611852 TP53INP1Q96A56 240 aa15.31■□□□□ 0.04
CCDC28A-202ENST00000611852 ELP4Q96EB1 424 aa15.31■□□□□ 0.04
CCDC28A-202ENST00000611852 EBF4Q9BQW3 602 aa15.31■□□□□ 0.04
CCDC28A-202ENST00000611852 DUSP26Q9BV47 211 aa15.31■□□□□ 0.04
CCDC28A-202ENST00000611852 CCDC134Q9H6E4 229 aa15.31■□□□□ 0.04
CCDC28A-202ENST00000611852 CFL2Q9Y281 166 aa15.31■□□□□ 0.04
CCDC28A-202ENST00000611852 HEMK1Q9Y5R4 338 aaPredicted RBP15.31■□□□□ 0.04
CCDC28A-202ENST00000611852 GPR45Q9Y5Y3 372 aa15.31■□□□□ 0.04
CCDC28A-202ENST00000611852 UPK1AO00322 258 aa15.3■□□□□ 0.04
CCDC28A-202ENST00000611852 OR6B1O95007 311 aa15.3■□□□□ 0.04
CCDC28A-202ENST00000611852 NADKO95544 446 aaPredicted RBP15.3■□□□□ 0.04
CCDC28A-202ENST00000611852 IFI6P09912 130 aa15.3■□□□□ 0.04
CCDC28A-202ENST00000611852 IDO1P14902 403 aa15.3■□□□□ 0.04
CCDC28A-202ENST00000611852 EFNA1P20827 205 aaPredicted RBP15.3■□□□□ 0.04
CCDC28A-202ENST00000611852 MDH1P40925 334 aaKnown RBP15.3■□□□□ 0.04
CCDC28A-202ENST00000611852 SOX3P41225 446 aa15.3■□□□□ 0.04
CCDC28A-202ENST00000611852 C19orf57Q0VDD7 668 aa15.3■□□□□ 0.04
CCDC28A-202ENST00000611852 MLC1Q15049 377 aa15.3■□□□□ 0.04
CCDC28A-202ENST00000611852 HLA-DQA1Q5Y7H0 255 aa15.3■□□□□ 0.04
CCDC28A-202ENST00000611852 NATD1Q8N6N6 113 aa15.3■□□□□ 0.04
CCDC28A-202ENST00000611852 HORMAD2Q8N7B1 307 aa15.3■□□□□ 0.04
CCDC28A-202ENST00000611852 C17orf47Q8NEP4 570 aa15.3■□□□□ 0.04
CCDC28A-202ENST00000611852 SLC22A8Q8TCC7 542 aa15.3■□□□□ 0.04
CCDC28A-202ENST00000611852 ASB15Q8WXK1 588 aa15.3■□□□□ 0.04
CCDC28A-202ENST00000611852 TESCQ96BS2 214 aa15.3■□□□□ 0.04
CCDC28A-202ENST00000611852 TEX37Q96LM6 180 aa15.3■□□□□ 0.04
CCDC28A-202ENST00000611852 ITPAQ9BY32 194 aa15.3■□□□□ 0.04
CCDC28A-202ENST00000611852 BHLHE41Q9C0J9 482 aaPredicted RBP15.3■□□□□ 0.04
CCDC28A-202ENST00000611852 TCF7L2Q9NQB0 619 aa15.3■□□□□ 0.04
CCDC28A-202ENST00000611852 PRODH2Q9UF12 536 aa15.3■□□□□ 0.04
CCDC28A-202ENST00000611852 C19orf53Q9UNZ5 99 aaPredicted RBP15.3■□□□□ 0.04
CCDC28A-202ENST00000611852 PCDHGA10Q9Y5H3 936 aa15.3■□□□□ 0.04
CCDC28A-202ENST00000611852 A0A1W2PRB8 838 aa15.29■□□□□ 0.04
CCDC28A-202ENST00000611852 A8MVJ9 347 aa15.29■□□□□ 0.04
CCDC28A-202ENST00000611852 UBDO15205 165 aa15.29■□□□□ 0.04
CCDC28A-202ENST00000611852 PSMG1O95456 288 aa15.29■□□□□ 0.04
CCDC28A-202ENST00000611852 NR0B1P51843 470 aaKnown RBP15.29■□□□□ 0.04
CCDC28A-202ENST00000611852 CLNS1AP54105 237 aaKnown RBP15.29■□□□□ 0.04
CCDC28A-202ENST00000611852 NME5P56597 212 aa15.29■□□□□ 0.04
CCDC28A-202ENST00000611852 UFM1P61960 85 aa15.29■□□□□ 0.04
CCDC28A-202ENST00000611852 PGS1Q32NB8 556 aa15.29■□□□□ 0.04
CCDC28A-202ENST00000611852 ZNF766Q5HY98 468 aa15.29■□□□□ 0.04
CCDC28A-202ENST00000611852 LYPD8Q6UX82 237 aa15.29■□□□□ 0.04
CCDC28A-202ENST00000611852 GPALPP1Q8IXQ4 340 aa15.29■□□□□ 0.04
CCDC28A-202ENST00000611852 CYP4Z2PQ8N1L4 340 aa15.29■□□□□ 0.04
CCDC28A-202ENST00000611852 SLC15A4Q8N697 577 aa15.29■□□□□ 0.04
CCDC28A-202ENST00000611852 OR8J2Q8NGG1 315 aa15.29■□□□□ 0.04
CCDC28A-202ENST00000611852 THOC1Q96FV9 657 aaKnown RBP15.29■□□□□ 0.04
CCDC28A-202ENST00000611852 MARK4Q96L34 752 aa15.29■□□□□ 0.04
CCDC28A-202ENST00000611852 CCDC28BQ9BUN5 200 aa15.29■□□□□ 0.04
CCDC28A-202ENST00000611852 EPN3Q9H201 632 aa15.29■□□□□ 0.04
CCDC28A-202ENST00000611852 CLMPQ9H6B4 373 aa15.29■□□□□ 0.04
CCDC28A-202ENST00000611852 DDX18Q9NVP1 670 aaKnown RBP15.29■□□□□ 0.04
CCDC28A-202ENST00000611852 HPF1Q9NWY4 346 aa15.29■□□□□ 0.04
CCDC28A-202ENST00000611852 TAS2R9Q9NYW1 312 aa15.29■□□□□ 0.04
CCDC28A-202ENST00000611852 SPENQ96T58 3664 aaKnown RBP15.28■□□□□ 0.04
CCDC28A-202ENST00000611852 TTLL8A6PVC2 850 aa15.28■□□□□ 0.04
CCDC28A-202ENST00000611852 COQ9O75208 318 aa15.28■□□□□ 0.04
CCDC28A-202ENST00000611852 NME6O75414 186 aaPredicted RBP15.28■□□□□ 0.04
CCDC28A-202ENST00000611852 SLC25A12O75746 678 aa15.28■□□□□ 0.04
CCDC28A-202ENST00000611852 GPC1P35052 558 aa15.28■□□□□ 0.04
CCDC28A-202ENST00000611852 CDK9P50750 372 aaKnown RBP15.28■□□□□ 0.04
CCDC28A-202ENST00000611852 GYS2P54840 703 aa15.28■□□□□ 0.04
CCDC28A-202ENST00000611852 SRSF11Q05519 484 aaKnown RBP15.28■□□□□ 0.04
CCDC28A-202ENST00000611852 RPS6KA2Q15349 733 aa15.28■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 79.9 ms