RNA–Protein interactions for RNA: ENST00000611481.1

LINC00540-201, long intergenic non-protein coding RNA 540, humanhuman

TSL 4

Gene LINC00540, Length 588 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-201ENST00000611481 IVLP07476 585 aa4□□□□□ -1.77
LINC00540-201ENST00000611481 UMODP07911 640 aa4□□□□□ -1.77
LINC00540-201ENST00000611481 UQCRHP07919 91 aa4□□□□□ -1.77
LINC00540-201ENST00000611481 CHRM4P08173 479 aa4□□□□□ -1.77
LINC00540-201ENST00000611481 SRD5A1P18405 259 aa4□□□□□ -1.77
LINC00540-201ENST00000611481 MMP8P22894 467 aa4□□□□□ -1.77
LINC00540-201ENST00000611481 PRPHP41219 470 aa4□□□□□ -1.77
LINC00540-201ENST00000611481 RGS7P49802 495 aa4□□□□□ -1.77
LINC00540-201ENST00000611481 ARSEP51690 589 aa4□□□□□ -1.77
LINC00540-201ENST00000611481 CAPZA1P52907 286 aa4□□□□□ -1.77
LINC00540-201ENST00000611481 CDH4P55283 916 aa4□□□□□ -1.77
LINC00540-201ENST00000611481 SNRPD1P62314 119 aaKnown RBP4□□□□□ -1.77
LINC00540-201ENST00000611481 CDK3Q00526 305 aa4□□□□□ -1.77
LINC00540-201ENST00000611481 RCN2Q14257 317 aa4□□□□□ -1.77
LINC00540-201ENST00000611481 CAPRIN1Q14444 709 aaKnown RBP4□□□□□ -1.77
LINC00540-201ENST00000611481 SGSM1Q2NKQ1 1148 aa4□□□□□ -1.77
LINC00540-201ENST00000611481 GOLGA7BQ2TAP0 167 aa4□□□□□ -1.77
LINC00540-201ENST00000611481 ANKRD20A4Q4UJ75 823 aa4□□□□□ -1.77
LINC00540-201ENST00000611481 PYCR3Q53H96 274 aa4□□□□□ -1.77
LINC00540-201ENST00000611481 ANKRD20A8PQ5CZ79 823 aa4□□□□□ -1.77
LINC00540-201ENST00000611481 ANKRD20A2Q5SQ80 823 aa4□□□□□ -1.77
LINC00540-201ENST00000611481 ANKRD20A1Q5TYW2 823 aa4□□□□□ -1.77
LINC00540-201ENST00000611481 ANKRD20A3Q5VUR7 823 aa4□□□□□ -1.77
LINC00540-201ENST00000611481 OTUD1Q5VV17 481 aaPredicted RBP4□□□□□ -1.77
LINC00540-201ENST00000611481 WDR93Q6P2C0 686 aa4□□□□□ -1.77
LINC00540-201ENST00000611481 ADCK1Q86TW2 530 aa4□□□□□ -1.77
LINC00540-201ENST00000611481 RTL3Q8N8U3 475 aaKnown RBP4□□□□□ -1.77
LINC00540-201ENST00000611481 XXYLT1Q8NBI6 393 aa4□□□□□ -1.77
LINC00540-201ENST00000611481 C11orf65Q8NCR3 313 aa4□□□□□ -1.77
LINC00540-201ENST00000611481 OR2AP1Q8NGE2 309 aa4□□□□□ -1.77
LINC00540-201ENST00000611481 OR10Q1Q8NGQ4 319 aa4□□□□□ -1.77
LINC00540-201ENST00000611481 OR2Y1Q8NGV0 311 aa4□□□□□ -1.77
LINC00540-201ENST00000611481 OR8K5Q8NH50 307 aa4□□□□□ -1.77
LINC00540-201ENST00000611481 UBA3Q8TBC4 463 aa4□□□□□ -1.77
LINC00540-201ENST00000611481 CLEC4CQ8WTT0 213 aa4□□□□□ -1.77
LINC00540-201ENST00000611481 ZBED6CLQ96FA7 236 aaPredicted RBP4□□□□□ -1.77
LINC00540-201ENST00000611481 ZNF274Q96GC6 653 aaPredicted RBP4□□□□□ -1.77
LINC00540-201ENST00000611481 SIGLEC12Q96PQ1 595 aa4□□□□□ -1.77
LINC00540-201ENST00000611481 TRIM51Q9BSJ1 452 aa4□□□□□ -1.77
LINC00540-201ENST00000611481 NPLQ9BXD5 320 aaPredicted RBP4□□□□□ -1.77
LINC00540-201ENST00000611481 FGFBP2Q9BYJ0 223 aa4□□□□□ -1.77
LINC00540-201ENST00000611481 TRIM7Q9C029 511 aa4□□□□□ -1.77
LINC00540-201ENST00000611481 SHARPINQ9H0F6 387 aa4□□□□□ -1.77
LINC00540-201ENST00000611481 ZNF696Q9H7X3 374 aa4□□□□□ -1.77
LINC00540-201ENST00000611481 TRIM36Q9NQ86 728 aa4□□□□□ -1.77
LINC00540-201ENST00000611481 PSD3Q9NYI0 1048 aa4□□□□□ -1.77
LINC00540-201ENST00000611481 SLC12A6Q9UHW9 1150 aa4□□□□□ -1.77
LINC00540-201ENST00000611481 RIMKLBQ9ULI2 386 aa4□□□□□ -1.77
LINC00540-201ENST00000611481 KCNK6Q9Y257 313 aa4□□□□□ -1.77
LINC00540-201ENST00000611481 SLC17A4Q9Y2C5 497 aa4□□□□□ -1.77
LINC00540-201ENST00000611481 MRPS2Q9Y399 296 aaKnown RBP4□□□□□ -1.77
LINC00540-201ENST00000611481 CAPN7Q9Y6W3 813 aa4□□□□□ -1.77
LINC00540-201ENST00000611481 CR1P17927 2039 aa4□□□□□ -1.77
LINC00540-201ENST00000611481 FREM1Q5H8C1 2179 aa3.99□□□□□ -1.77
LINC00540-201ENST00000611481 KIR2DS5A0A0G2JLQ3 304 aa3.99□□□□□ -1.77
LINC00540-201ENST00000611481 A0A0G2JNG1 304 aa3.99□□□□□ -1.77
LINC00540-201ENST00000611481 RGSL1A5PLK6 1076 aa3.99□□□□□ -1.77
LINC00540-201ENST00000611481 C2CD4BA6NLJ0 364 aa3.99□□□□□ -1.77
LINC00540-201ENST00000611481 USP27XA6NNY8 438 aa3.99□□□□□ -1.77
LINC00540-201ENST00000611481 A8MX80 341 aa3.99□□□□□ -1.77
LINC00540-201ENST00000611481 K7EPI3 171 aa3.99□□□□□ -1.77
LINC00540-201ENST00000611481 KIR2DS3K7RE56 304 aa3.99□□□□□ -1.77
LINC00540-201ENST00000611481 ACOT8O14734 319 aa3.99□□□□□ -1.77
LINC00540-201ENST00000611481 LIASO43766 372 aa3.99□□□□□ -1.77
LINC00540-201ENST00000611481 HS6ST1O60243 411 aa3.99□□□□□ -1.77
LINC00540-201ENST00000611481 AVILO75366 819 aa3.99□□□□□ -1.77
LINC00540-201ENST00000611481 ZMPSTE24O75844 475 aa3.99□□□□□ -1.77
LINC00540-201ENST00000611481 GAS8-AS1O95177 125 aa3.99□□□□□ -1.77
LINC00540-201ENST00000611481 PIGNO95427 931 aa3.99□□□□□ -1.77
LINC00540-201ENST00000611481 CD160O95971 181 aa3.99□□□□□ -1.77
LINC00540-201ENST00000611481 GSRP00390 522 aa3.99□□□□□ -1.77
LINC00540-201ENST00000611481 TMEM225BP0DP42 221 aa3.99□□□□□ -1.77
LINC00540-201ENST00000611481 F3P13726 295 aa3.99□□□□□ -1.77
LINC00540-201ENST00000611481 SLC2A4P14672 509 aa3.99□□□□□ -1.77
LINC00540-201ENST00000611481 GM2AP17900 193 aa3.99□□□□□ -1.77
LINC00540-201ENST00000611481 CYP2A7P20853 494 aa3.99□□□□□ -1.77
LINC00540-201ENST00000611481 MMP12P39900 470 aa3.99□□□□□ -1.77
LINC00540-201ENST00000611481 ZFP36L2P47974 494 aaKnown RBP3.99□□□□□ -1.77
LINC00540-201ENST00000611481 MTNR1AP48039 350 aa3.99□□□□□ -1.77
LINC00540-201ENST00000611481 RAB28P51157 221 aa3.99□□□□□ -1.77
LINC00540-201ENST00000611481 CYP2J2P51589 502 aa3.99□□□□□ -1.77
LINC00540-201ENST00000611481 SUOXP51687 545 aa3.99□□□□□ -1.77
LINC00540-201ENST00000611481 RPS6KA3P51812 740 aa3.99□□□□□ -1.77
LINC00540-201ENST00000611481 PNLIPRP2P54317 469 aa3.99□□□□□ -1.77
LINC00540-201ENST00000611481 TIRAPP58753 221 aa3.99□□□□□ -1.77
LINC00540-201ENST00000611481 STX1BP61266 288 aa3.99□□□□□ -1.77
LINC00540-201ENST00000611481 UBE2IP63279 158 aaKnown RBP3.99□□□□□ -1.77
LINC00540-201ENST00000611481 CEBPZQ03701 1054 aaKnown RBP3.99□□□□□ -1.77
LINC00540-201ENST00000611481 RAD51Q06609 339 aa3.99□□□□□ -1.77
LINC00540-201ENST00000611481 SLC20A2Q08357 652 aa3.99□□□□□ -1.77
LINC00540-201ENST00000611481 ALKBH1Q13686 389 aaKnown RBP3.99□□□□□ -1.77
LINC00540-201ENST00000611481 CBFBQ13951 182 aa3.99□□□□□ -1.77
LINC00540-201ENST00000611481 VEZF1Q14119 521 aa3.99□□□□□ -1.77
LINC00540-201ENST00000611481 KIR2DS5Q14953 304 aa3.99□□□□□ -1.77
LINC00540-201ENST00000611481 UGP2Q16851 508 aa3.99□□□□□ -1.77
LINC00540-201ENST00000611481 SH2D4BQ5SQS7 431 aa3.99□□□□□ -1.77
LINC00540-201ENST00000611481 C6orf52Q5T4I8 152 aa3.99□□□□□ -1.77
LINC00540-201ENST00000611481 GFI1BQ5VTD9 330 aa3.99□□□□□ -1.77
LINC00540-201ENST00000611481 C1orf189Q5VU69 101 aa3.99□□□□□ -1.77
LINC00540-201ENST00000611481 SYPL2Q5VXT5 272 aa3.99□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms