RNA–Protein interactions for RNA: ENST00000599322.5

LIG1-218, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 620 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-218ENST00000599322 TMEM211Q6ICI0 200 aa13.04□□□□□ -0.32
LIG1-218ENST00000599322 NOXRED1Q6NXP6 359 aa13.04□□□□□ -0.32
LIG1-218ENST00000599322 XKRXQ6PP77 449 aa13.04□□□□□ -0.32
LIG1-218ENST00000599322 Q6ZPB1 254 aaPredicted RBP13.04□□□□□ -0.32
LIG1-218ENST00000599322 IKBIPQ70UQ0 350 aa13.04□□□□□ -0.32
LIG1-218ENST00000599322 PACS2Q86VP3 889 aa13.04□□□□□ -0.32
LIG1-218ENST00000599322 DDIASQ8IXT1 998 aa13.04□□□□□ -0.32
LIG1-218ENST00000599322 FAM9CQ8IZT9 166 aa13.04□□□□□ -0.32
LIG1-218ENST00000599322 FBXW8Q8N3Y1 598 aa13.04□□□□□ -0.32
LIG1-218ENST00000599322 LIX1Q8N485 282 aa13.04□□□□□ -0.32
LIG1-218ENST00000599322 ZNF808Q8N4W9 903 aaPredicted RBP13.04□□□□□ -0.32
LIG1-218ENST00000599322 ZNF615Q8N8J6 731 aa13.04□□□□□ -0.32
LIG1-218ENST00000599322 ADCY4Q8NFM4 1077 aa13.04□□□□□ -0.32
LIG1-218ENST00000599322 PAQR8Q8TEZ7 354 aa13.04□□□□□ -0.32
LIG1-218ENST00000599322 LCORQ96JN0 433 aaPredicted RBP13.04□□□□□ -0.32
LIG1-218ENST00000599322 JSRP1Q96MG2 331 aaPredicted RBP13.04□□□□□ -0.32
LIG1-218ENST00000599322 SECISBP2Q96T21 854 aaKnown RBP13.04□□□□□ -0.32
LIG1-218ENST00000599322 DOHHQ9BU89 302 aa13.04□□□□□ -0.32
LIG1-218ENST00000599322 TTTY12Q9BZ98 90 aa13.04□□□□□ -0.32
LIG1-218ENST00000599322 LRTM1Q9HBL6 345 aa13.04□□□□□ -0.32
LIG1-218ENST00000599322 C1orf109Q9NX04 203 aa13.04□□□□□ -0.32
LIG1-218ENST00000599322 MAT2BQ9NZL9 334 aa13.04□□□□□ -0.32
LIG1-218ENST00000599322 ZNF835Q9Y2P0 537 aa13.04□□□□□ -0.32
LIG1-218ENST00000599322 A0A1B0GTH9 108 aa13.03□□□□□ -0.32
LIG1-218ENST00000599322 COQ9O75208 318 aa13.03□□□□□ -0.32
LIG1-218ENST00000599322 SNX4O95219 450 aa13.03□□□□□ -0.32
LIG1-218ENST00000599322 CT62P0C5K7 136 aa13.03□□□□□ -0.32
LIG1-218ENST00000599322 MAPK1P28482 360 aa13.03□□□□□ -0.32
LIG1-218ENST00000599322 PTGER1P34995 402 aa13.03□□□□□ -0.32
LIG1-218ENST00000599322 GCKP35557 465 aa13.03□□□□□ -0.32
LIG1-218ENST00000599322 PIGAP37287 484 aa13.03□□□□□ -0.32
LIG1-218ENST00000599322 DNASE1L1P49184 302 aa13.03□□□□□ -0.32
LIG1-218ENST00000599322 RAE1P78406 368 aaKnown RBP13.03□□□□□ -0.32
LIG1-218ENST00000599322 MRPS22P82650 360 aaKnown RBP13.03□□□□□ -0.32
LIG1-218ENST00000599322 NTRK2Q16620 822 aa13.03□□□□□ -0.32
LIG1-218ENST00000599322 RNFT1Q5M7Z0 435 aa13.03□□□□□ -0.32
LIG1-218ENST00000599322 PRAMEF20Q5VT98 475 aa13.03□□□□□ -0.32
LIG1-218ENST00000599322 CLEC6AQ6EIG7 209 aa13.03□□□□□ -0.32
LIG1-218ENST00000599322 FAM111BQ6SJ93 734 aa13.03□□□□□ -0.32
LIG1-218ENST00000599322 NUP54Q7Z3B4 507 aa13.03□□□□□ -0.32
LIG1-218ENST00000599322 MRGPRGQ86SM5 289 aa13.03□□□□□ -0.32
LIG1-218ENST00000599322 TICAM1Q8IUC6 712 aa13.03□□□□□ -0.32
LIG1-218ENST00000599322 NUDCD3Q8IVD9 361 aa13.03□□□□□ -0.32
LIG1-218ENST00000599322 OR52R1Q8NGF1 315 aa13.03□□□□□ -0.32
LIG1-218ENST00000599322 FAM57AQ8TBR7 257 aa13.03□□□□□ -0.32
LIG1-218ENST00000599322 ZNF675Q8TD23 568 aa13.03□□□□□ -0.32
LIG1-218ENST00000599322 CNRIP1Q96F85 164 aaPredicted RBP13.03□□□□□ -0.32
LIG1-218ENST00000599322 ZNF597Q96LX8 424 aa13.03□□□□□ -0.32
LIG1-218ENST00000599322 CCT7Q99832 543 aa13.03□□□□□ -0.32
LIG1-218ENST00000599322 ZFP64Q9NPA5 681 aa13.03□□□□□ -0.32
LIG1-218ENST00000599322 MYNNQ9NPC7 610 aa13.03□□□□□ -0.32
LIG1-218ENST00000599322 TAS2R9Q9NYW1 312 aa13.03□□□□□ -0.32
LIG1-218ENST00000599322 COQ3Q9NZJ6 369 aa13.03□□□□□ -0.32
LIG1-218ENST00000599322 HEY2Q9UBP5 337 aa13.03□□□□□ -0.32
LIG1-218ENST00000599322 TINAGQ9UJW2 476 aa13.03□□□□□ -0.32
LIG1-218ENST00000599322 TMED5Q9Y3A6 229 aa13.03□□□□□ -0.32
LIG1-218ENST00000599322 TRAF6Q9Y4K3 522 aa13.03□□□□□ -0.32
LIG1-218ENST00000599322 POLR3HQ9Y535 204 aaPredicted RBP13.03□□□□□ -0.32
LIG1-218ENST00000599322 ATP6AP2A0A1C7CYW4 349 aa13.02□□□□□ -0.33
LIG1-218ENST00000599322 A0A1W2PS29 197 aa13.02□□□□□ -0.33
LIG1-218ENST00000599322 ANKRD33BA6NCL7 494 aa13.02□□□□□ -0.33
LIG1-218ENST00000599322 TMEM114B3SHH9 223 aa13.02□□□□□ -0.33
LIG1-218ENST00000599322 E9PLN8 166 aa13.02□□□□□ -0.33
LIG1-218ENST00000599322 BCKDKO14874 412 aa13.02□□□□□ -0.33
LIG1-218ENST00000599322 ATP6AP2O75787 350 aa13.02□□□□□ -0.33
LIG1-218ENST00000599322 NADKO95544 446 aaPredicted RBP13.02□□□□□ -0.33
LIG1-218ENST00000599322 FGF4P08620 206 aa13.02□□□□□ -0.33
LIG1-218ENST00000599322 DRD5P21918 477 aa13.02□□□□□ -0.33
LIG1-218ENST00000599322 DCTP40126 519 aa13.02□□□□□ -0.33
LIG1-218ENST00000599322 PPICP45877 212 aa13.02□□□□□ -0.33
LIG1-218ENST00000599322 ASMTP46597 345 aa13.02□□□□□ -0.33
LIG1-218ENST00000599322 MAN2A2P49641 1150 aa13.02□□□□□ -0.33
LIG1-218ENST00000599322 NCBP2P52298 156 aaKnown RBP eCLIP13.02□□□□□ -0.33
LIG1-218ENST00000599322 HSF1Q00613 529 aa13.02□□□□□ -0.33
LIG1-218ENST00000599322 PLCXD2Q0VAA5 305 aa13.02□□□□□ -0.33
LIG1-218ENST00000599322 ART3Q13508 389 aa13.02□□□□□ -0.33
LIG1-218ENST00000599322 EXOSC7Q15024 291 aaKnown RBP13.02□□□□□ -0.33
LIG1-218ENST00000599322 ZNHIT3Q15649 155 aaPredicted RBP13.02□□□□□ -0.33
LIG1-218ENST00000599322 CMPK2Q5EBM0 449 aa13.02□□□□□ -0.33
LIG1-218ENST00000599322 ARL13AQ5H913 290 aaPredicted RBP13.02□□□□□ -0.33
LIG1-218ENST00000599322 CEP85LQ5SZL2 805 aa13.02□□□□□ -0.33
LIG1-218ENST00000599322 KIRREL3Q8IZU9 778 aa13.02□□□□□ -0.33
LIG1-218ENST00000599322 MMP21Q8N119 569 aa13.02□□□□□ -0.33
LIG1-218ENST00000599322 SLC34A3Q8N130 599 aa13.02□□□□□ -0.33
LIG1-218ENST00000599322 TMEM251Q8N6I4 163 aa13.02□□□□□ -0.33
LIG1-218ENST00000599322 OR10G3Q8NGC4 313 aa13.02□□□□□ -0.33
LIG1-218ENST00000599322 OR52N2Q8NGI0 321 aa13.02□□□□□ -0.33
LIG1-218ENST00000599322 SARAFQ96BY9 339 aa13.02□□□□□ -0.33
LIG1-218ENST00000599322 TMCO6Q96DC7 493 aa13.02□□□□□ -0.33
LIG1-218ENST00000599322 CCDC120Q96HB5 630 aa13.02□□□□□ -0.33
LIG1-218ENST00000599322 PPP3R2Q96LZ3 170 aa13.02□□□□□ -0.33
LIG1-218ENST00000599322 ZNF681Q96N22 645 aa13.02□□□□□ -0.33
LIG1-218ENST00000599322 VKORC1Q9BQB6 163 aa13.02□□□□□ -0.33
LIG1-218ENST00000599322 TP63Q9H3D4 680 aaPredicted RBP13.02□□□□□ -0.33
LIG1-218ENST00000599322 METTL7AQ9H8H3 244 aa13.02□□□□□ -0.33
LIG1-218ENST00000599322 KCNK9Q9NPC2 374 aa13.02□□□□□ -0.33
LIG1-218ENST00000599322 DEPPQ9NTK1 212 aa13.02□□□□□ -0.33
LIG1-218ENST00000599322 QPCTLQ9NXS2 382 aa13.02□□□□□ -0.33
LIG1-218ENST00000599322 TUBA8Q9NY65 449 aaPredicted RBP13.02□□□□□ -0.33
LIG1-218ENST00000599322 SLC17A7Q9P2U7 560 aa13.02□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms