RNA–Protein interactions for RNA: ENST00000598907.5

SHKBP1-218, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 738 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-218ENST00000598907 CDCP1Q9H5V8 836 aa12.88□□□□□ -0.35
SHKBP1-218ENST00000598907 VPS29Q9UBQ0 182 aa12.88□□□□□ -0.35
SHKBP1-218ENST00000598907 C19orf25Q9UFG5 118 aaPredicted RBP12.88□□□□□ -0.35
SHKBP1-218ENST00000598907 Q9UFV3 132 aa12.88□□□□□ -0.35
SHKBP1-218ENST00000598907 ZANQ9Y493 2812 aa12.88□□□□□ -0.35
SHKBP1-218ENST00000598907 ATP6AP2A0A1C7CYW4 349 aa12.87□□□□□ -0.35
SHKBP1-218ENST00000598907 OR2W5A6NFC9 320 aa12.87□□□□□ -0.35
SHKBP1-218ENST00000598907 TRIM64A6NGJ6 449 aa12.87□□□□□ -0.35
SHKBP1-218ENST00000598907 TRIM64BA6NI03 449 aa12.87□□□□□ -0.35
SHKBP1-218ENST00000598907 C4orf51C9J302 202 aa12.87□□□□□ -0.35
SHKBP1-218ENST00000598907 HAX1O00165 279 aa12.87□□□□□ -0.35
SHKBP1-218ENST00000598907 NDUFS4O43181 175 aa12.87□□□□□ -0.35
SHKBP1-218ENST00000598907 ARHGEF9O43307 516 aa12.87□□□□□ -0.35
SHKBP1-218ENST00000598907 WIPF1O43516 503 aa12.87□□□□□ -0.35
SHKBP1-218ENST00000598907 ATP6AP2O75787 350 aa12.87□□□□□ -0.35
SHKBP1-218ENST00000598907 SEMA3DO95025 777 aa12.87□□□□□ -0.35
SHKBP1-218ENST00000598907 SLC35G6P0C7Q6 338 aa12.87□□□□□ -0.35
SHKBP1-218ENST00000598907 TACR1P25103 407 aa12.87□□□□□ -0.35
SHKBP1-218ENST00000598907 SNRPNP63162 240 aaKnown RBP12.87□□□□□ -0.35
SHKBP1-218ENST00000598907 SMU1Q2TAY7 513 aa12.87□□□□□ -0.35
SHKBP1-218ENST00000598907 TMEM35AQ53FP2 167 aa12.87□□□□□ -0.35
SHKBP1-218ENST00000598907 C6orf136Q5SQH8 315 aa12.87□□□□□ -0.35
SHKBP1-218ENST00000598907 TMEM214Q6NUQ4 689 aaKnown RBP12.87□□□□□ -0.35
SHKBP1-218ENST00000598907 METTL4Q8N3J2 472 aa12.87□□□□□ -0.35
SHKBP1-218ENST00000598907 CSNK1A1LQ8N752 337 aa12.87□□□□□ -0.35
SHKBP1-218ENST00000598907 POGLUT1Q8NBL1 392 aa12.87□□□□□ -0.35
SHKBP1-218ENST00000598907 KCT2Q8NC54 265 aa12.87□□□□□ -0.35
SHKBP1-218ENST00000598907 OR52N2Q8NGI0 321 aa12.87□□□□□ -0.35
SHKBP1-218ENST00000598907 CCT6BQ92526 530 aa12.87□□□□□ -0.35
SHKBP1-218ENST00000598907 FCRL1Q96LA6 429 aa12.87□□□□□ -0.35
SHKBP1-218ENST00000598907 OR52B2Q96RD2 323 aa12.87□□□□□ -0.35
SHKBP1-218ENST00000598907 F2RL3Q96RI0 385 aa12.87□□□□□ -0.35
SHKBP1-218ENST00000598907 ELAC2Q9BQ52 826 aaKnown RBP12.87□□□□□ -0.35
SHKBP1-218ENST00000598907 CCDC28BQ9BUN5 200 aa12.87□□□□□ -0.35
SHKBP1-218ENST00000598907 TMEM120AQ9BXJ8 343 aa12.87□□□□□ -0.35
SHKBP1-218ENST00000598907 ZNF717Q9BY31 904 aaPredicted RBP12.87□□□□□ -0.35
SHKBP1-218ENST00000598907 TGIF2Q9GZN2 237 aa12.87□□□□□ -0.35
SHKBP1-218ENST00000598907 OR51B5Q9H339 312 aa12.87□□□□□ -0.35
SHKBP1-218ENST00000598907 WDR55Q9H6Y2 383 aaPredicted RBP12.87□□□□□ -0.35
SHKBP1-218ENST00000598907 AKTIPQ9H8T0 292 aa12.87□□□□□ -0.35
SHKBP1-218ENST00000598907 BEX4Q9NWD9 120 aaPredicted RBP12.87□□□□□ -0.35
SHKBP1-218ENST00000598907 NMRK1Q9NWW6 199 aa12.87□□□□□ -0.35
SHKBP1-218ENST00000598907 DCTN4Q9UJW0 460 aa12.87□□□□□ -0.35
SHKBP1-218ENST00000598907 SLC12A4Q9UP95 1085 aa12.87□□□□□ -0.35
SHKBP1-218ENST00000598907 RUVBL1Q9Y265 456 aaKnown RBP12.87□□□□□ -0.35
SHKBP1-218ENST00000598907 SCN3AQ9NY46 2000 aa12.86□□□□□ -0.35
SHKBP1-218ENST00000598907 PLPP1O14494 284 aa12.86□□□□□ -0.35
SHKBP1-218ENST00000598907 STATHP02808 62 aa12.86□□□□□ -0.35
SHKBP1-218ENST00000598907 SERPIND1P05546 499 aa12.86□□□□□ -0.35
SHKBP1-218ENST00000598907 GLI4P10075 376 aa12.86□□□□□ -0.35
SHKBP1-218ENST00000598907 CD53P19397 219 aa12.86□□□□□ -0.35
SHKBP1-218ENST00000598907 ACVR2AP27037 513 aa12.86□□□□□ -0.35
SHKBP1-218ENST00000598907 TPP2P29144 1249 aaPredicted RBP12.86□□□□□ -0.35
SHKBP1-218ENST00000598907 EPHA3P29320 983 aa12.86□□□□□ -0.35
SHKBP1-218ENST00000598907 BSGP35613 385 aa12.86□□□□□ -0.35
SHKBP1-218ENST00000598907 ADH7P40394 386 aa12.86□□□□□ -0.35
SHKBP1-218ENST00000598907 ARFIP2P53365 341 aa12.86□□□□□ -0.35
SHKBP1-218ENST00000598907 TAS2R50P59544 299 aa12.86□□□□□ -0.35
SHKBP1-218ENST00000598907 GPR85P60893 370 aa12.86□□□□□ -0.35
SHKBP1-218ENST00000598907 STXBP1P61764 594 aaKnown RBP12.86□□□□□ -0.35
SHKBP1-218ENST00000598907 RGS1Q08116 209 aa12.86□□□□□ -0.35
SHKBP1-218ENST00000598907 POU4F3Q15319 338 aa12.86□□□□□ -0.35
SHKBP1-218ENST00000598907 IMPG1Q17R60 797 aa12.86□□□□□ -0.35
SHKBP1-218ENST00000598907 SLC25A35Q3KQZ1 300 aa12.86□□□□□ -0.35
SHKBP1-218ENST00000598907 LSM12Q3MHD2 195 aaKnown RBP12.86□□□□□ -0.35
SHKBP1-218ENST00000598907 RFTN2Q52LD8 501 aaPredicted RBP12.86□□□□□ -0.35
SHKBP1-218ENST00000598907 TOR1AIP1Q5JTV8 583 aa12.86□□□□□ -0.35
SHKBP1-218ENST00000598907 GARNL3Q5VVW2 1013 aa12.86□□□□□ -0.35
SHKBP1-218ENST00000598907 OGFOD2Q6N063 350 aa12.86□□□□□ -0.35
SHKBP1-218ENST00000598907 HMBOX1Q6NT76 420 aa12.86□□□□□ -0.35
SHKBP1-218ENST00000598907 GALNT18Q6P9A2 607 aa12.86□□□□□ -0.35
SHKBP1-218ENST00000598907 ABHD17CQ6PCB6 329 aa12.86□□□□□ -0.35
SHKBP1-218ENST00000598907 B3GNT6Q6ZMB0 384 aa12.86□□□□□ -0.35
SHKBP1-218ENST00000598907 SPATA21Q7Z572 469 aa12.86□□□□□ -0.35
SHKBP1-218ENST00000598907 ANKRD37Q7Z713 158 aa12.86□□□□□ -0.35
SHKBP1-218ENST00000598907 SULF2Q8IWU5 870 aa12.86□□□□□ -0.35
SHKBP1-218ENST00000598907 SHISA5Q8N114 240 aa12.86□□□□□ -0.35
SHKBP1-218ENST00000598907 OR2L5Q8NG80 312 aa12.86□□□□□ -0.35
SHKBP1-218ENST00000598907 CEP70Q8NHQ1 597 aa12.86□□□□□ -0.35
SHKBP1-218ENST00000598907 UTP15Q8TED0 518 aaKnown RBP12.86□□□□□ -0.35
SHKBP1-218ENST00000598907 FAM222BQ8WU58 562 aa12.86□□□□□ -0.35
SHKBP1-218ENST00000598907 GAL3ST3Q96A11 431 aa12.86□□□□□ -0.35
SHKBP1-218ENST00000598907 TUBGCP3Q96CW5 907 aa12.86□□□□□ -0.35
SHKBP1-218ENST00000598907 APIPQ96GX9 242 aa12.86□□□□□ -0.35
SHKBP1-218ENST00000598907 PPP1R36Q96LQ0 422 aa12.86□□□□□ -0.35
SHKBP1-218ENST00000598907 PPP3R2Q96LZ3 170 aa12.86□□□□□ -0.35
SHKBP1-218ENST00000598907 QRFPRQ96P65 431 aa12.86□□□□□ -0.35
SHKBP1-218ENST00000598907 TTYH2Q9BSA4 534 aa12.86□□□□□ -0.35
SHKBP1-218ENST00000598907 MRPL1Q9BYD6 325 aaKnown RBP12.86□□□□□ -0.35
SHKBP1-218ENST00000598907 REXO4Q9GZR2 422 aaKnown RBP12.86□□□□□ -0.35
SHKBP1-218ENST00000598907 LRTM1Q9HBL6 345 aa12.86□□□□□ -0.35
SHKBP1-218ENST00000598907 PRDM7Q9NQW5 492 aa12.86□□□□□ -0.35
SHKBP1-218ENST00000598907 C1orf109Q9NX04 203 aa12.86□□□□□ -0.35
SHKBP1-218ENST00000598907 GIMAP2Q9UG22 337 aa12.86□□□□□ -0.35
SHKBP1-218ENST00000598907 SLC22A7Q9Y694 548 aa12.86□□□□□ -0.35
SHKBP1-218ENST00000598907 A0A0G2JND7 137 aa12.85□□□□□ -0.35
SHKBP1-218ENST00000598907 GOLGA8QA0A0J9YX86 632 aa12.85□□□□□ -0.35
SHKBP1-218ENST00000598907 GOLGA8OA6NCC3 632 aa12.85□□□□□ -0.35
SHKBP1-218ENST00000598907 URADA6NGE7 173 aa12.85□□□□□ -0.35
SHKBP1-218ENST00000598907 GOLGA8NF8WBI6 632 aa12.85□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms