RNA–Protein interactions for RNA: ENST00000598355.1

TRIM28-213, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 714 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-213ENST00000598355 ADCY4Q8NFM4 1077 aa14.88□□□□□ -0.03
TRIM28-213ENST00000598355 OR2M7Q8NG81 312 aa14.88□□□□□ -0.03
TRIM28-213ENST00000598355 EXOSC8Q96B26 276 aaKnown RBP14.88□□□□□ -0.03
TRIM28-213ENST00000598355 NTNG2Q96CW9 530 aa14.88□□□□□ -0.03
TRIM28-213ENST00000598355 EGLN2Q96KS0 407 aa14.88□□□□□ -0.03
TRIM28-213ENST00000598355 SORT1Q99523 831 aa14.88□□□□□ -0.03
TRIM28-213ENST00000598355 BRINP2Q9C0B6 783 aa14.88□□□□□ -0.03
TRIM28-213ENST00000598355 C20orf27Q9GZN8 174 aa14.88□□□□□ -0.03
TRIM28-213ENST00000598355 STMN4Q9H169 189 aaPredicted RBP14.88□□□□□ -0.03
TRIM28-213ENST00000598355 CENPHQ9H3R5 247 aa14.88□□□□□ -0.03
TRIM28-213ENST00000598355 TMBIM4Q9HC24 238 aa14.88□□□□□ -0.03
TRIM28-213ENST00000598355 PLSCR2Q9NRY7 297 aa14.88□□□□□ -0.03
TRIM28-213ENST00000598355 SEC14L3Q9UDX4 400 aa14.88□□□□□ -0.03
TRIM28-213ENST00000598355 ERRFI1Q9UJM3 462 aaPredicted RBP14.88□□□□□ -0.03
TRIM28-213ENST00000598355 ENTPD4Q9Y227 616 aa14.88□□□□□ -0.03
TRIM28-213ENST00000598355 CFL2Q9Y281 166 aa14.88□□□□□ -0.03
TRIM28-213ENST00000598355 CHCHD2Q9Y6H1 151 aaPredicted RBP14.88□□□□□ -0.03
TRIM28-213ENST00000598355 NUP214P35658 2090 aaPredicted RBP14.88□□□□□ -0.03
TRIM28-213ENST00000598355 PINLYPA6NC86 204 aa14.87□□□□□ -0.03
TRIM28-213ENST00000598355 GLSO94925 669 aaPredicted RBP14.87□□□□□ -0.03
TRIM28-213ENST00000598355 SLITRK5O94991 958 aa14.87□□□□□ -0.03
TRIM28-213ENST00000598355 UNC5CO95185 931 aa14.87□□□□□ -0.03
TRIM28-213ENST00000598355 PSMG1O95456 288 aa14.87□□□□□ -0.03
TRIM28-213ENST00000598355 LDLRP01130 860 aa14.87□□□□□ -0.03
TRIM28-213ENST00000598355 GRK2P25098 689 aa14.87□□□□□ -0.03
TRIM28-213ENST00000598355 FRKP42685 505 aaPredicted RBP14.87□□□□□ -0.03
TRIM28-213ENST00000598355 GPR85P60893 370 aa14.87□□□□□ -0.03
TRIM28-213ENST00000598355 MRPS35P82673 323 aaKnown RBP14.87□□□□□ -0.03
TRIM28-213ENST00000598355 SRSF11Q05519 484 aaKnown RBP14.87□□□□□ -0.03
TRIM28-213ENST00000598355 FOXO1Q12778 655 aa14.87□□□□□ -0.03
TRIM28-213ENST00000598355 CASP8Q14790 479 aa14.87□□□□□ -0.03
TRIM28-213ENST00000598355 EXOSC7Q15024 291 aaKnown RBP14.87□□□□□ -0.03
TRIM28-213ENST00000598355 CHI3L2Q15782 390 aa14.87□□□□□ -0.03
TRIM28-213ENST00000598355 HYAL4Q2M3T9 481 aa14.87□□□□□ -0.03
TRIM28-213ENST00000598355 C4orf17Q53FE4 359 aa14.87□□□□□ -0.03
TRIM28-213ENST00000598355 TRMT12Q53H54 448 aaKnown RBP14.87□□□□□ -0.03
TRIM28-213ENST00000598355 GFRALQ6UXV0 394 aa14.87□□□□□ -0.03
TRIM28-213ENST00000598355 CCDC116Q8IYX3 515 aa14.87□□□□□ -0.03
TRIM28-213ENST00000598355 OR9A2Q8NGT5 310 aa14.87□□□□□ -0.03
TRIM28-213ENST00000598355 PRR7Q8TB68 274 aa14.87□□□□□ -0.03
TRIM28-213ENST00000598355 AGR3Q8TD06 166 aa14.87□□□□□ -0.03
TRIM28-213ENST00000598355 PPP3R2Q96LZ3 170 aa14.87□□□□□ -0.03
TRIM28-213ENST00000598355 C3orf30Q96M34 536 aa14.87□□□□□ -0.03
TRIM28-213ENST00000598355 NXF5Q9H1B4 397 aaKnown RBP14.87□□□□□ -0.03
TRIM28-213ENST00000598355 PROK2Q9HC23 129 aa14.87□□□□□ -0.03
TRIM28-213ENST00000598355 MIEF1Q9NQG6 463 aa14.87□□□□□ -0.03
TRIM28-213ENST00000598355 GIMAP4Q9NUV9 329 aa14.87□□□□□ -0.03
TRIM28-213ENST00000598355 SLC5A6Q9Y289 635 aa14.87□□□□□ -0.03
TRIM28-213ENST00000598355 ZNF835Q9Y2P0 537 aa14.87□□□□□ -0.03
TRIM28-213ENST00000598355 A0A087WV62 115 aa14.86□□□□□ -0.03
TRIM28-213ENST00000598355 TMEM120BA0PK00 339 aa14.86□□□□□ -0.03
TRIM28-213ENST00000598355 PLOD2O00469 737 aa14.86□□□□□ -0.03
TRIM28-213ENST00000598355 LYPLA1O75608 230 aaPredicted RBP14.86□□□□□ -0.03
TRIM28-213ENST00000598355 JUNP05412 331 aaKnown RBP14.86□□□□□ -0.03
TRIM28-213ENST00000598355 CNR1P21554 472 aa14.86□□□□□ -0.03
TRIM28-213ENST00000598355 NR0B1P51843 470 aaKnown RBP14.86□□□□□ -0.03
TRIM28-213ENST00000598355 WDR4P57081 412 aaKnown RBP14.86□□□□□ -0.03
TRIM28-213ENST00000598355 ABCE1P61221 599 aaKnown RBP14.86□□□□□ -0.03
TRIM28-213ENST00000598355 RPS6KA2Q15349 733 aa14.86□□□□□ -0.03
TRIM28-213ENST00000598355 ZNF800Q2TB10 664 aaPredicted RBP eCLIP14.86□□□□□ -0.03
TRIM28-213ENST00000598355 CMPK2Q5EBM0 449 aa14.86□□□□□ -0.03
TRIM28-213ENST00000598355 TMEM81Q6P7N7 255 aa14.86□□□□□ -0.03
TRIM28-213ENST00000598355 Q6ZPB1 254 aaPredicted RBP14.86□□□□□ -0.03
TRIM28-213ENST00000598355 GK5Q6ZS86 529 aa14.86□□□□□ -0.03
TRIM28-213ENST00000598355 DDIASQ8IXT1 998 aa14.86□□□□□ -0.03
TRIM28-213ENST00000598355 FAM9CQ8IZT9 166 aa14.86□□□□□ -0.03
TRIM28-213ENST00000598355 TAGAPQ8N103 731 aa14.86□□□□□ -0.03
TRIM28-213ENST00000598355 FBXW8Q8N3Y1 598 aa14.86□□□□□ -0.03
TRIM28-213ENST00000598355 OR52R1Q8NGF1 315 aa14.86□□□□□ -0.03
TRIM28-213ENST00000598355 SSC4DQ8WTU2 575 aa14.86□□□□□ -0.03
TRIM28-213ENST00000598355 RELTQ969Z4 430 aa14.86□□□□□ -0.03
TRIM28-213ENST00000598355 VSTM2LQ96N03 204 aa14.86□□□□□ -0.03
TRIM28-213ENST00000598355 PSMG3-AS1Q96PY0 264 aa14.86□□□□□ -0.03
TRIM28-213ENST00000598355 BTBD9Q96Q07 612 aa14.86□□□□□ -0.03
TRIM28-213ENST00000598355 SECISBP2Q96T21 854 aaKnown RBP14.86□□□□□ -0.03
TRIM28-213ENST00000598355 FAM173AQ9BQD7 235 aa14.86□□□□□ -0.03
TRIM28-213ENST00000598355 ITPAQ9BY32 194 aa14.86□□□□□ -0.03
TRIM28-213ENST00000598355 ZDHHC11Q9H8X9 412 aa14.86□□□□□ -0.03
TRIM28-213ENST00000598355 SACM1LQ9NTJ5 587 aa14.86□□□□□ -0.03
TRIM28-213ENST00000598355 CNOT11Q9UKZ1 510 aaKnown RBP14.86□□□□□ -0.03
TRIM28-213ENST00000598355 EPB41L3Q9Y2J2 1087 aaPredicted RBP14.86□□□□□ -0.03
TRIM28-213ENST00000598355 NPFFR2Q9Y5X5 522 aa14.86□□□□□ -0.03
TRIM28-213ENST00000598355 PHF3Q92576 2039 aaKnown RBP14.85□□□□□ -0.03
TRIM28-213ENST00000598355 ANKRD33BA6NCL7 494 aa14.85□□□□□ -0.03
TRIM28-213ENST00000598355 NPIPA5E9PKD4 350 aa14.85□□□□□ -0.03
TRIM28-213ENST00000598355 TO15178 435 aa14.85□□□□□ -0.03
TRIM28-213ENST00000598355 ACOX3O15254 700 aa14.85□□□□□ -0.03
TRIM28-213ENST00000598355 ASNA1O43681 348 aa14.85□□□□□ -0.03
TRIM28-213ENST00000598355 BCAS2O75934 225 aaPredicted RBP14.85□□□□□ -0.03
TRIM28-213ENST00000598355 AGFG2O95081 481 aa14.85□□□□□ -0.03
TRIM28-213ENST00000598355 BCKDHAP12694 445 aa14.85□□□□□ -0.03
TRIM28-213ENST00000598355 NAGAP17050 411 aa14.85□□□□□ -0.03
TRIM28-213ENST00000598355 ABCD3P28288 659 aa14.85□□□□□ -0.03
TRIM28-213ENST00000598355 MPIP34949 423 aa14.85□□□□□ -0.03
TRIM28-213ENST00000598355 TMED10P49755 219 aaKnown RBP14.85□□□□□ -0.03
TRIM28-213ENST00000598355 DCAF7P61962 342 aa14.85□□□□□ -0.03
TRIM28-213ENST00000598355 ZNF385BQ569K4 471 aa14.85□□□□□ -0.03
TRIM28-213ENST00000598355 C6orf136Q5SQH8 315 aa14.85□□□□□ -0.03
TRIM28-213ENST00000598355 KIRREL3Q8IZU9 778 aa14.85□□□□□ -0.03
TRIM28-213ENST00000598355 GHDCQ8N2G8 530 aa14.85□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 58.7 ms