RNA–Protein interactions for RNA: ENST00000597423.1

TRIM28-209, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-209ENST00000597423 ELF3P78545 371 aaPredicted RBP14.24□□□□□ -0.13
TRIM28-209ENST00000597423 MRPS35P82673 323 aaKnown RBP14.24□□□□□ -0.13
TRIM28-209ENST00000597423 MGAT2Q10469 447 aa14.24□□□□□ -0.13
TRIM28-209ENST00000597423 NCF4Q15080 339 aa14.24□□□□□ -0.13
TRIM28-209ENST00000597423 RSPO4Q2I0M5 234 aaPredicted RBP14.24□□□□□ -0.13
TRIM28-209ENST00000597423 VMACQ2NL98 169 aa14.24□□□□□ -0.13
TRIM28-209ENST00000597423 TRMT12Q53H54 448 aaKnown RBP14.24□□□□□ -0.13
TRIM28-209ENST00000597423 MTX3Q5HYI7 312 aa14.24□□□□□ -0.13
TRIM28-209ENST00000597423 GLYATQ6IB77 296 aa14.24□□□□□ -0.13
TRIM28-209ENST00000597423 FAM111BQ6SJ93 734 aa14.24□□□□□ -0.13
TRIM28-209ENST00000597423 NLGN4XQ8N0W4 816 aa14.24□□□□□ -0.13
TRIM28-209ENST00000597423 CDRT4Q8N9R6 151 aa14.24□□□□□ -0.13
TRIM28-209ENST00000597423 FAM156AQ8NDB6 213 aa14.24□□□□□ -0.13
TRIM28-209ENST00000597423 MORN4Q8NDC4 146 aa14.24□□□□□ -0.13
TRIM28-209ENST00000597423 NLGN4YQ8NFZ3 816 aaPredicted RBP14.24□□□□□ -0.13
TRIM28-209ENST00000597423 STMN2Q93045 179 aa14.24□□□□□ -0.13
TRIM28-209ENST00000597423 SLC46A1Q96NT5 459 aa14.24□□□□□ -0.13
TRIM28-209ENST00000597423 GPR87Q9BY21 358 aa14.24□□□□□ -0.13
TRIM28-209ENST00000597423 PCDHAC1Q9H158 963 aa14.24□□□□□ -0.13
TRIM28-209ENST00000597423 DENND2DQ9H6A0 471 aaPredicted RBP14.24□□□□□ -0.13
TRIM28-209ENST00000597423 GORASP2Q9H8Y8 452 aa14.24□□□□□ -0.13
TRIM28-209ENST00000597423 GPATCH2Q9NW75 528 aa14.24□□□□□ -0.13
TRIM28-209ENST00000597423 ZNF639Q9UID6 485 aa14.24□□□□□ -0.13
TRIM28-209ENST00000597423 LIPT1Q9Y234 373 aa14.24□□□□□ -0.13
TRIM28-209ENST00000597423 DMDP11532 3685 aa14.24□□□□□ -0.13
TRIM28-209ENST00000597423 WDR87Q6ZQQ6 2873 aa14.24□□□□□ -0.13
TRIM28-209ENST00000597423 AQP12BA6NM10 295 aa14.23□□□□□ -0.13
TRIM28-209ENST00000597423 STMND1H3BQB6 276 aa14.23□□□□□ -0.13
TRIM28-209ENST00000597423 ACOT8O14734 319 aa14.23□□□□□ -0.13
TRIM28-209ENST00000597423 PRAMEF2O60811 474 aa14.23□□□□□ -0.13
TRIM28-209ENST00000597423 TNFRSF21O75509 655 aa14.23□□□□□ -0.13
TRIM28-209ENST00000597423 DLGAP3O95886 979 aa14.23□□□□□ -0.13
TRIM28-209ENST00000597423 ALOX5P09917 674 aa14.23□□□□□ -0.13
TRIM28-209ENST00000597423 GGT1P19440 569 aa14.23□□□□□ -0.13
TRIM28-209ENST00000597423 TCN2P20062 427 aa14.23□□□□□ -0.13
TRIM28-209ENST00000597423 MSX2P35548 267 aaPredicted RBP14.23□□□□□ -0.13
TRIM28-209ENST00000597423 FOLR3P41439 243 aa14.23□□□□□ -0.13
TRIM28-209ENST00000597423 MVDP53602 400 aa14.23□□□□□ -0.13
TRIM28-209ENST00000597423 GABREP78334 506 aa14.23□□□□□ -0.13
TRIM28-209ENST00000597423 MS4A2Q01362 244 aa14.23□□□□□ -0.13
TRIM28-209ENST00000597423 FUT7Q11130 342 aa14.23□□□□□ -0.13
TRIM28-209ENST00000597423 LASP1Q14847 261 aaKnown RBP14.23□□□□□ -0.13
TRIM28-209ENST00000597423 KPNB1Q14974 876 aaKnown RBP14.23□□□□□ -0.13
TRIM28-209ENST00000597423 FXNQ16595 210 aa14.23□□□□□ -0.13
TRIM28-209ENST00000597423 COX20Q5RI15 118 aa14.23□□□□□ -0.13
TRIM28-209ENST00000597423 FHL5Q5TD97 284 aa14.23□□□□□ -0.13
TRIM28-209ENST00000597423 CDC73Q6P1J9 531 aa14.23□□□□□ -0.13
TRIM28-209ENST00000597423 TNFAIP8L2Q6P589 184 aaPredicted RBP14.23□□□□□ -0.13
TRIM28-209ENST00000597423 SHISA6Q6ZSJ9 500 aa14.23□□□□□ -0.13
TRIM28-209ENST00000597423 AQP12AQ8IXF9 295 aa14.23□□□□□ -0.13
TRIM28-209ENST00000597423 SHISA5Q8N114 240 aa14.23□□□□□ -0.13
TRIM28-209ENST00000597423 GOLM1Q8NBJ4 401 aa14.23□□□□□ -0.13
TRIM28-209ENST00000597423 OR52R1Q8NGF1 315 aa14.23□□□□□ -0.13
TRIM28-209ENST00000597423 XAGE5Q8WWM1 108 aa14.23□□□□□ -0.13
TRIM28-209ENST00000597423 TSLPQ969D9 159 aa14.23□□□□□ -0.13
TRIM28-209ENST00000597423 PMEPA1Q969W9 287 aa14.23□□□□□ -0.13
TRIM28-209ENST00000597423 RNF31Q96EP0 1072 aa14.23□□□□□ -0.13
TRIM28-209ENST00000597423 SENP5Q96HI0 755 aaPredicted RBP14.23□□□□□ -0.13
TRIM28-209ENST00000597423 FBXL20Q96IG2 436 aa14.23□□□□□ -0.13
TRIM28-209ENST00000597423 NSMCE2Q96MF7 247 aa14.23□□□□□ -0.13
TRIM28-209ENST00000597423 CNPPD1Q9BV87 410 aa14.23□□□□□ -0.13
TRIM28-209ENST00000597423 SPRY4Q9C004 299 aa14.23□□□□□ -0.13
TRIM28-209ENST00000597423 OR51I1Q9H343 314 aa14.23□□□□□ -0.13
TRIM28-209ENST00000597423 A4GALTQ9NPC4 353 aa14.23□□□□□ -0.13
TRIM28-209ENST00000597423 GIN1Q9NXP7 522 aa14.23□□□□□ -0.13
TRIM28-209ENST00000597423 CALML5Q9NZT1 146 aa14.23□□□□□ -0.13
TRIM28-209ENST00000597423 P2RX2Q9UBL9 471 aa14.23□□□□□ -0.13
TRIM28-209ENST00000597423 COPS7AQ9UBW8 275 aa14.23□□□□□ -0.13
TRIM28-209ENST00000597423 EGFL7Q9UHF1 273 aa14.23□□□□□ -0.13
TRIM28-209ENST00000597423 ANGPT4Q9Y264 503 aa14.23□□□□□ -0.13
TRIM28-209ENST00000597423 FARSAQ9Y285 508 aaKnown RBP14.23□□□□□ -0.13
TRIM28-209ENST00000597423 PTRH2Q9Y3E5 179 aaKnown RBP14.23□□□□□ -0.13
TRIM28-209ENST00000597423 CLDN16Q9Y5I7 305 aa14.23□□□□□ -0.13
TRIM28-209ENST00000597423 SPTBP11277 2137 aa14.23□□□□□ -0.13
TRIM28-209ENST00000597423 FAM149AA5PLN7 773 aa14.22□□□□□ -0.13
TRIM28-209ENST00000597423 A8MUA0 341 aa14.22□□□□□ -0.13
TRIM28-209ENST00000597423 C21orf140B9A014 251 aa14.22□□□□□ -0.13
TRIM28-209ENST00000597423 TGFBR3LH3BV60 316 aa14.22□□□□□ -0.13
TRIM28-209ENST00000597423 CXCR6O00574 342 aa14.22□□□□□ -0.13
TRIM28-209ENST00000597423 NR2F1P10589 423 aa14.22□□□□□ -0.13
TRIM28-209ENST00000597423 HOXB6P17509 224 aaKnown RBP14.22□□□□□ -0.13
TRIM28-209ENST00000597423 PTGER1P34995 402 aa14.22□□□□□ -0.13
TRIM28-209ENST00000597423 PCGF2P35227 344 aa14.22□□□□□ -0.13
TRIM28-209ENST00000597423 CDK6Q00534 326 aa14.22□□□□□ -0.13
TRIM28-209ENST00000597423 LCN10Q6JVE6 187 aa14.22□□□□□ -0.13
TRIM28-209ENST00000597423 LCN8Q6JVE9 175 aa14.22□□□□□ -0.13
TRIM28-209ENST00000597423 REEP3Q6NUK4 255 aa14.22□□□□□ -0.13
TRIM28-209ENST00000597423 MFSD12Q6NUT3 480 aa14.22□□□□□ -0.13
TRIM28-209ENST00000597423 FAM199XQ6PEV8 388 aaPredicted RBP14.22□□□□□ -0.13
TRIM28-209ENST00000597423 IGF2-ASQ6U949 168 aa14.22□□□□□ -0.13
TRIM28-209ENST00000597423 GPR155Q7Z3F1 870 aa14.22□□□□□ -0.13
TRIM28-209ENST00000597423 CPEB2Q7Z5Q1 589 aaKnown RBP14.22□□□□□ -0.13
TRIM28-209ENST00000597423 ANKRD37Q7Z713 158 aa14.22□□□□□ -0.13
TRIM28-209ENST00000597423 SPATA24Q86W54 205 aa14.22□□□□□ -0.13
TRIM28-209ENST00000597423 ZZZ3Q8IYH5 903 aa14.22□□□□□ -0.13
TRIM28-209ENST00000597423 LGI4Q8N135 537 aa14.22□□□□□ -0.13
TRIM28-209ENST00000597423 HORMAD2Q8N7B1 307 aa14.22□□□□□ -0.13
TRIM28-209ENST00000597423 HIPK4Q8NE63 616 aa14.22□□□□□ -0.13
TRIM28-209ENST00000597423 BHLHE22Q8NFJ8 381 aaPredicted RBP14.22□□□□□ -0.13
TRIM28-209ENST00000597423 OR52E4Q8NGH9 312 aa14.22□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms