RNA–Protein interactions for RNA: ENST00000593223.1

SMAD4-216, Transcript of SMAD family member 4, humanhuman

TSL 3

Gene SMAD4, Length 568 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-216ENST00000593223 EXT2Q93063 718 aa4.37□□□□□ -1.71
SMAD4-216ENST00000593223 DCPSQ96C86 337 aaKnown RBP4.37□□□□□ -1.71
SMAD4-216ENST00000593223 RASD2Q96D21 266 aa4.37□□□□□ -1.71
SMAD4-216ENST00000593223 FAM71F1Q96KD3 344 aaPredicted RBP4.37□□□□□ -1.71
SMAD4-216ENST00000593223 RPGRIP1Q96KN7 1286 aa4.37□□□□□ -1.71
SMAD4-216ENST00000593223 GPA33Q99795 319 aa4.37□□□□□ -1.71
SMAD4-216ENST00000593223 MRPL37Q9BZE1 423 aaKnown RBP4.37□□□□□ -1.71
SMAD4-216ENST00000593223 OSBPL8Q9BZF1 889 aa4.37□□□□□ -1.71
SMAD4-216ENST00000593223 LAT2Q9GZY6 243 aa4.37□□□□□ -1.71
SMAD4-216ENST00000593223 TMEM117Q9H0C3 514 aa4.37□□□□□ -1.71
SMAD4-216ENST00000593223 DCTPP1Q9H773 170 aa4.37□□□□□ -1.71
SMAD4-216ENST00000593223 AGPAT3Q9NRZ7 376 aa4.37□□□□□ -1.71
SMAD4-216ENST00000593223 GKN1Q9NS71 199 aa4.37□□□□□ -1.71
SMAD4-216ENST00000593223 OLAHQ9NV23 265 aa4.37□□□□□ -1.71
SMAD4-216ENST00000593223 BARHL2Q9NY43 387 aa4.37□□□□□ -1.71
SMAD4-216ENST00000593223 DAPK2Q9UIK4 370 aa4.37□□□□□ -1.71
SMAD4-216ENST00000593223 GMEB2Q9UKD1 530 aa4.37□□□□□ -1.71
SMAD4-216ENST00000593223 MRPS28Q9Y2Q9 187 aaKnown RBP4.37□□□□□ -1.71
SMAD4-216ENST00000593223 UBE4BO95155 1302 aa4.37□□□□□ -1.71
SMAD4-216ENST00000593223 SNED1Q8TER0 1413 aa4.37□□□□□ -1.71
SMAD4-216ENST00000593223 XIRP2A4UGR9 3374 aa4.36□□□□□ -1.71
SMAD4-216ENST00000593223 ARFGEF2Q9Y6D5 1785 aa4.36□□□□□ -1.71
SMAD4-216ENST00000593223 LOC100506127A0A0U1RQW1 187 aa4.36□□□□□ -1.71
SMAD4-216ENST00000593223 C13orf42A0A1B0GVH6 325 aa4.36□□□□□ -1.71
SMAD4-216ENST00000593223 C2orf92A0A1B0GVN3 265 aa4.36□□□□□ -1.71
SMAD4-216ENST00000593223 YDJCA8MPS7 323 aa4.36□□□□□ -1.71
SMAD4-216ENST00000593223 WRBO00258 174 aa4.36□□□□□ -1.71
SMAD4-216ENST00000593223 OGTO15294 1046 aa4.36□□□□□ -1.71
SMAD4-216ENST00000593223 LRRTM2O43300 516 aa4.36□□□□□ -1.71
SMAD4-216ENST00000593223 EXTL3O43909 919 aa4.36□□□□□ -1.71
SMAD4-216ENST00000593223 TBX19O60806 448 aa4.36□□□□□ -1.71
SMAD4-216ENST00000593223 ECI2O75521 394 aa4.36□□□□□ -1.71
SMAD4-216ENST00000593223 OR6B1O95007 311 aa4.36□□□□□ -1.71
SMAD4-216ENST00000593223 DANCRP0C864 163 aa4.36□□□□□ -1.71
SMAD4-216ENST00000593223 SMIM18P0DKX4 95 aa4.36□□□□□ -1.71
SMAD4-216ENST00000593223 C8orf89P0DMQ9 161 aa4.36□□□□□ -1.71
SMAD4-216ENST00000593223 CLUP10909 449 aa4.36□□□□□ -1.71
SMAD4-216ENST00000593223 CEACAM1P13688 526 aa4.36□□□□□ -1.71
SMAD4-216ENST00000593223 GCFC2P16383 781 aaKnown RBP4.36□□□□□ -1.71
SMAD4-216ENST00000593223 ACHEP22303 614 aa4.36□□□□□ -1.71
SMAD4-216ENST00000593223 CD27P26842 260 aa4.36□□□□□ -1.71
SMAD4-216ENST00000593223 PTPN6P29350 595 aa4.36□□□□□ -1.71
SMAD4-216ENST00000593223 HAAOP46952 286 aa4.36□□□□□ -1.71
SMAD4-216ENST00000593223 IRX1P78414 480 aaPredicted RBP4.36□□□□□ -1.71
SMAD4-216ENST00000593223 BASP1P80723 227 aaKnown RBP4.36□□□□□ -1.71
SMAD4-216ENST00000593223 SNTB2Q13425 540 aaKnown RBP4.36□□□□□ -1.71
SMAD4-216ENST00000593223 AANATQ16613 207 aa4.36□□□□□ -1.71
SMAD4-216ENST00000593223 ITPRIPL2Q3MIP1 535 aa4.36□□□□□ -1.71
SMAD4-216ENST00000593223 Q3ZCU0 254 aa4.36□□□□□ -1.71
SMAD4-216ENST00000593223 SLC36A3Q495N2 470 aa4.36□□□□□ -1.71
SMAD4-216ENST00000593223 MCMDC2Q4G0Z9 681 aa4.36□□□□□ -1.71
SMAD4-216ENST00000593223 C11orf63Q6NUN7 778 aa4.36□□□□□ -1.71
SMAD4-216ENST00000593223 ARHGAP22Q7Z5H3 698 aa4.36□□□□□ -1.71
SMAD4-216ENST00000593223 ABI3BPQ7Z7G0 1075 aa4.36□□□□□ -1.71
SMAD4-216ENST00000593223 C4orf19Q8IY42 314 aa4.36□□□□□ -1.71
SMAD4-216ENST00000593223 SYCE1Q8N0S2 351 aa4.36□□□□□ -1.71
SMAD4-216ENST00000593223 ADAD2Q8NCV1 583 aaKnown RBP4.36□□□□□ -1.71
SMAD4-216ENST00000593223 CCNYQ8ND76 341 aa4.36□□□□□ -1.71
SMAD4-216ENST00000593223 NPEPL1Q8NDH3 523 aa4.36□□□□□ -1.71
SMAD4-216ENST00000593223 DDHD1Q8NEL9 900 aa4.36□□□□□ -1.71
SMAD4-216ENST00000593223 TRPV1Q8NER1 839 aa4.36□□□□□ -1.71
SMAD4-216ENST00000593223 OR9A1PQ8NGU1 263 aa4.36□□□□□ -1.71
SMAD4-216ENST00000593223 OLIG1Q8TAK6 271 aa4.36□□□□□ -1.71
SMAD4-216ENST00000593223 STARD8Q92502 1023 aa4.36□□□□□ -1.71
SMAD4-216ENST00000593223 TMIGD2Q96BF3 282 aa4.36□□□□□ -1.71
SMAD4-216ENST00000593223 THOC1Q96FV9 657 aaKnown RBP4.36□□□□□ -1.71
SMAD4-216ENST00000593223 LINC00615Q96LM1 132 aaPredicted RBP4.36□□□□□ -1.71
SMAD4-216ENST00000593223 PSKH2Q96QS6 385 aa4.36□□□□□ -1.71
SMAD4-216ENST00000593223 COQ7Q99807 217 aa4.36□□□□□ -1.71
SMAD4-216ENST00000593223 ZNF416Q9BWM5 594 aa4.36□□□□□ -1.71
SMAD4-216ENST00000593223 GPR88Q9GZN0 384 aa4.36□□□□□ -1.71
SMAD4-216ENST00000593223 FAM192AQ9GZU8 254 aa4.36□□□□□ -1.71
SMAD4-216ENST00000593223 VCX2Q9H322 139 aa4.36□□□□□ -1.71
SMAD4-216ENST00000593223 AZI2Q9H6S1 392 aa4.36□□□□□ -1.71
SMAD4-216ENST00000593223 TDRD3Q9H7E2 651 aaKnown RBP4.36□□□□□ -1.71
SMAD4-216ENST00000593223 NOL11Q9H8H0 719 aaKnown RBP4.36□□□□□ -1.71
SMAD4-216ENST00000593223 ANKZF1Q9H8Y5 726 aa4.36□□□□□ -1.71
SMAD4-216ENST00000593223 SDR39U1Q9NRG7 319 aaPredicted RBP4.36□□□□□ -1.71
SMAD4-216ENST00000593223 NUDT15Q9NV35 164 aa4.36□□□□□ -1.71
SMAD4-216ENST00000593223 INTS9Q9NV88 658 aaKnown RBP4.36□□□□□ -1.71
SMAD4-216ENST00000593223 KLHL28Q9NXS3 571 aa4.36□□□□□ -1.71
SMAD4-216ENST00000593223 SPHK1Q9NYA1 384 aa4.36□□□□□ -1.71
SMAD4-216ENST00000593223 EMC3Q9P0I2 261 aa4.36□□□□□ -1.71
SMAD4-216ENST00000593223 CBY1Q9Y3M2 126 aa4.36□□□□□ -1.71
SMAD4-216ENST00000593223 TPRP12270 2363 aaKnown RBP4.36□□□□□ -1.71
SMAD4-216ENST00000593223 TMEM221A6NGB7 291 aa4.35□□□□□ -1.71
SMAD4-216ENST00000593223 HSF2BPO75031 334 aa4.35□□□□□ -1.71
SMAD4-216ENST00000593223 WBP4O75554 376 aaKnown RBP4.35□□□□□ -1.71
SMAD4-216ENST00000593223 GNA14O95837 355 aa4.35□□□□□ -1.71
SMAD4-216ENST00000593223 SLC16A8O95907 504 aa4.35□□□□□ -1.71
SMAD4-216ENST00000593223 IGLV1-44P01699 117 aa4.35□□□□□ -1.71
SMAD4-216ENST00000593223 RLN1P04808 185 aa4.35□□□□□ -1.71
SMAD4-216ENST00000593223 FHP07954 510 aa4.35□□□□□ -1.71
SMAD4-216ENST00000593223 CA6P23280 308 aa4.35□□□□□ -1.71
SMAD4-216ENST00000593223 RPL9P32969 192 aaKnown RBP4.35□□□□□ -1.71
SMAD4-216ENST00000593223 PCGF2P35227 344 aa4.35□□□□□ -1.71
SMAD4-216ENST00000593223 CDKN1BP46527 198 aa4.35□□□□□ -1.71
SMAD4-216ENST00000593223 SUCLG1P53597 346 aaKnown RBP4.35□□□□□ -1.71
SMAD4-216ENST00000593223 MFAP3P55082 362 aa4.35□□□□□ -1.71
SMAD4-216ENST00000593223 UCP2P55851 309 aa4.35□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms