RNA–Protein interactions for RNA: ENST00000572607.1

VPS53-214, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 732 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-214ENST00000572607 ATP1B1P05026 303 aa7.48□□□□□ -1.21
VPS53-214ENST00000572607 IL3P08700 152 aa7.48□□□□□ -1.21
VPS53-214ENST00000572607 ANXA4P09525 319 aaPredicted RBP7.48□□□□□ -1.21
VPS53-214ENST00000572607 UROSP10746 265 aa7.48□□□□□ -1.21
VPS53-214ENST00000572607 DRD2P14416 443 aa7.48□□□□□ -1.21
VPS53-214ENST00000572607 CHN1P15882 459 aa7.48□□□□□ -1.21
VPS53-214ENST00000572607 CNR1P21554 472 aa7.48□□□□□ -1.21
VPS53-214ENST00000572607 SSTR4P31391 388 aa7.48□□□□□ -1.21
VPS53-214ENST00000572607 FEN1P39748 380 aaKnown RBP7.48□□□□□ -1.21
VPS53-214ENST00000572607 DCTP40126 519 aa7.48□□□□□ -1.21
VPS53-214ENST00000572607 RFC3P40938 356 aa7.48□□□□□ -1.21
VPS53-214ENST00000572607 CA7P43166 264 aa7.48□□□□□ -1.21
VPS53-214ENST00000572607 SLC37A1P57057 533 aa7.48□□□□□ -1.21
VPS53-214ENST00000572607 ERCC6LQ2NKX8 1250 aa7.48□□□□□ -1.21
VPS53-214ENST00000572607 KRT71Q3SY84 523 aa7.48□□□□□ -1.21
VPS53-214ENST00000572607 SLC22A10Q63ZE4 541 aa7.48□□□□□ -1.21
VPS53-214ENST00000572607 SCIMPQ6UWF3 145 aa7.48□□□□□ -1.21
VPS53-214ENST00000572607 RPTNQ6XPR3 784 aa7.48□□□□□ -1.21
VPS53-214ENST00000572607 DGAT2L6Q6ZPD8 337 aa7.48□□□□□ -1.21
VPS53-214ENST00000572607 MAMDC2Q7Z304 686 aaPredicted RBP7.48□□□□□ -1.21
VPS53-214ENST00000572607 TRABD2AQ86V40 505 aa7.48□□□□□ -1.21
VPS53-214ENST00000572607 SLC22A16Q86VW1 577 aa7.48□□□□□ -1.21
VPS53-214ENST00000572607 SPPL2CQ8IUH8 684 aa7.48□□□□□ -1.21
VPS53-214ENST00000572607 C10orf107Q8IVU9 208 aa7.48□□□□□ -1.21
VPS53-214ENST00000572607 SIAH3Q8IW03 269 aa7.48□□□□□ -1.21
VPS53-214ENST00000572607 LRRC25Q8N386 305 aaPredicted RBP7.48□□□□□ -1.21
VPS53-214ENST00000572607 GOLGA6L1Q8N7Z2 621 aa7.48□□□□□ -1.21
VPS53-214ENST00000572607 BANPQ8N9N5 519 aa7.48□□□□□ -1.21
VPS53-214ENST00000572607 ZFP62Q8NB50 900 aaPredicted RBP7.48□□□□□ -1.21
VPS53-214ENST00000572607 FAM13CQ8NE31 585 aa7.48□□□□□ -1.21
VPS53-214ENST00000572607 OR2M7Q8NG81 312 aa7.48□□□□□ -1.21
VPS53-214ENST00000572607 C16orf52Q8NHV5 167 aa7.48□□□□□ -1.21
VPS53-214ENST00000572607 PPP1R14CQ8TAE6 165 aa7.48□□□□□ -1.21
VPS53-214ENST00000572607 UCN3Q969E3 161 aa7.48□□□□□ -1.21
VPS53-214ENST00000572607 RELTQ969Z4 430 aa7.48□□□□□ -1.21
VPS53-214ENST00000572607 TP53INP1Q96A56 240 aa7.48□□□□□ -1.21
VPS53-214ENST00000572607 APIPQ96GX9 242 aa7.48□□□□□ -1.21
VPS53-214ENST00000572607 FAM111AQ96PZ2 611 aa7.48□□□□□ -1.21
VPS53-214ENST00000572607 EBPLQ9BY08 206 aa7.48□□□□□ -1.21
VPS53-214ENST00000572607 OR10A5Q9H207 317 aa7.48□□□□□ -1.21
VPS53-214ENST00000572607 CXorf21Q9HAI6 301 aa7.48□□□□□ -1.21
VPS53-214ENST00000572607 IL1RL2Q9HB29 575 aa7.48□□□□□ -1.21
VPS53-214ENST00000572607 MIEF1Q9NQG6 463 aa7.48□□□□□ -1.21
VPS53-214ENST00000572607 B4GALT7Q9UBV7 327 aa7.48□□□□□ -1.21
VPS53-214ENST00000572607 PRODH2Q9UF12 536 aa7.48□□□□□ -1.21
VPS53-214ENST00000572607 BCAP29Q9UHQ4 241 aa7.48□□□□□ -1.21
VPS53-214ENST00000572607 LGALS13Q9UHV8 139 aa7.48□□□□□ -1.21
VPS53-214ENST00000572607 BOKQ9UMX3 212 aaPredicted RBP7.48□□□□□ -1.21
VPS53-214ENST00000572607 DLGAP4Q9Y2H0 992 aa7.48□□□□□ -1.21
VPS53-214ENST00000572607 PLLPQ9Y342 182 aa7.48□□□□□ -1.21
VPS53-214ENST00000572607 SCN2AQ99250 2005 aa7.47□□□□□ -1.21
VPS53-214ENST00000572607 FAM166BA8MTA8 275 aa7.47□□□□□ -1.21
VPS53-214ENST00000572607 G3V3Y1 287 aa7.47□□□□□ -1.21
VPS53-214ENST00000572607 SLC28A1O00337 649 aa7.47□□□□□ -1.21
VPS53-214ENST00000572607 UBFD1O14562 309 aaKnown RBP7.47□□□□□ -1.21
VPS53-214ENST00000572607 AZIN1O14977 448 aa7.47□□□□□ -1.21
VPS53-214ENST00000572607 RGS16O15492 202 aaPredicted RBP7.47□□□□□ -1.21
VPS53-214ENST00000572607 ZG16O60844 167 aa7.47□□□□□ -1.21
VPS53-214ENST00000572607 SPAG7O75391 227 aa7.47□□□□□ -1.21
VPS53-214ENST00000572607 TPOP07202 933 aa7.47□□□□□ -1.21
VPS53-214ENST00000572607 NEFHP12036 1026 aa7.47□□□□□ -1.21
VPS53-214ENST00000572607 MSX1P28360 303 aa7.47□□□□□ -1.21
VPS53-214ENST00000572607 PTGS2P35354 604 aa7.47□□□□□ -1.21
VPS53-214ENST00000572607 NR0B1P51843 470 aaKnown RBP7.47□□□□□ -1.21
VPS53-214ENST00000572607 SMSP52788 366 aa7.47□□□□□ -1.21
VPS53-214ENST00000572607 FOXA1P55317 472 aa7.47□□□□□ -1.21
VPS53-214ENST00000572607 DCAF7P61962 342 aa7.47□□□□□ -1.21
VPS53-214ENST00000572607 PPIAP62937 165 aaKnown RBP7.47□□□□□ -1.21
VPS53-214ENST00000572607 KCNJ2P63252 427 aa7.47□□□□□ -1.21
VPS53-214ENST00000572607 HSF1Q00613 529 aa7.47□□□□□ -1.21
VPS53-214ENST00000572607 ZNF763Q0D2J5 394 aa7.47□□□□□ -1.21
VPS53-214ENST00000572607 C2orf80Q0P641 193 aa7.47□□□□□ -1.21
VPS53-214ENST00000572607 FUT7Q11130 342 aa7.47□□□□□ -1.21
VPS53-214ENST00000572607 MAP4K2Q12851 820 aa7.47□□□□□ -1.21
VPS53-214ENST00000572607 PCLAFQ15004 111 aa7.47□□□□□ -1.21
VPS53-214ENST00000572607 RPS6KA2Q15349 733 aa7.47□□□□□ -1.21
VPS53-214ENST00000572607 C3AR1Q16581 482 aa7.47□□□□□ -1.21
VPS53-214ENST00000572607 TBCELQ5QJ74 424 aa7.47□□□□□ -1.21
VPS53-214ENST00000572607 ARHGAP11AQ6P4F7 1023 aa7.47□□□□□ -1.21
VPS53-214ENST00000572607 GALNT18Q6P9A2 607 aa7.47□□□□□ -1.21
VPS53-214ENST00000572607 CROCCP2Q86T23 111 aa7.47□□□□□ -1.21
VPS53-214ENST00000572607 FAM109AQ8N4B1 249 aa7.47□□□□□ -1.21
VPS53-214ENST00000572607 MREGQ8N565 214 aa7.47□□□□□ -1.21
VPS53-214ENST00000572607 FAM76AQ8TAV0 307 aa7.47□□□□□ -1.21
VPS53-214ENST00000572607 C16orf78Q8WTQ4 265 aa7.47□□□□□ -1.21
VPS53-214ENST00000572607 EXOSC8Q96B26 276 aaKnown RBP7.47□□□□□ -1.21
VPS53-214ENST00000572607 BBS4Q96RK4 519 aa7.47□□□□□ -1.21
VPS53-214ENST00000572607 GATA5Q9BWX5 397 aaPredicted RBP7.47□□□□□ -1.21
VPS53-214ENST00000572607 PARD6BQ9BYG5 372 aa7.47□□□□□ -1.21
VPS53-214ENST00000572607 TTTY12Q9BZ98 90 aa7.47□□□□□ -1.21
VPS53-214ENST00000572607 C12orf65Q9H3J6 166 aaKnown RBP7.47□□□□□ -1.21
VPS53-214ENST00000572607 EXO5Q9H790 373 aa7.47□□□□□ -1.21
VPS53-214ENST00000572607 SIRT5Q9NXA8 310 aa7.47□□□□□ -1.21
VPS53-214ENST00000572607 EHD3Q9NZN3 535 aa7.47□□□□□ -1.21
VPS53-214ENST00000572607 CNIH4Q9P003 139 aa7.47□□□□□ -1.21
VPS53-214ENST00000572607 CES1P1Q9UKY3 287 aa7.47□□□□□ -1.21
VPS53-214ENST00000572607 WBP11Q9Y2W2 641 aaKnown RBP7.47□□□□□ -1.21
VPS53-214ENST00000572607 FIS1Q9Y3D6 152 aa7.47□□□□□ -1.21
VPS53-214ENST00000572607 POLR3HQ9Y535 204 aaPredicted RBP7.47□□□□□ -1.21
VPS53-214ENST00000572607 CNTRLQ7Z7A1 2325 aa7.47□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms