RNA–Protein interactions for RNA: ENST00000563842.5

CLK3-213, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 860 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-213ENST00000563842 FAM71E1Q6IPT2 247 aa12.36□□□□□ -0.43
CLK3-213ENST00000563842 MTFR2Q6P444 385 aa12.36□□□□□ -0.43
CLK3-213ENST00000563842 FAM111BQ6SJ93 734 aa12.36□□□□□ -0.43
CLK3-213ENST00000563842 Q6ZSR9 355 aa12.36□□□□□ -0.43
CLK3-213ENST00000563842 ZCCHC23Q6ZST2 131 aa12.36□□□□□ -0.43
CLK3-213ENST00000563842 SLC22A16Q86VW1 577 aa12.36□□□□□ -0.43
CLK3-213ENST00000563842 SIAH3Q8IW03 269 aa12.36□□□□□ -0.43
CLK3-213ENST00000563842 FAM9CQ8IZT9 166 aa12.36□□□□□ -0.43
CLK3-213ENST00000563842 ZNF441Q8N8Z8 693 aa12.36□□□□□ -0.43
CLK3-213ENST00000563842 ADCY4Q8NFM4 1077 aa12.36□□□□□ -0.43
CLK3-213ENST00000563842 OR2M7Q8NG81 312 aa12.36□□□□□ -0.43
CLK3-213ENST00000563842 PUM2Q8TB72 1066 aaKnown RBP eCLIP12.36□□□□□ -0.43
CLK3-213ENST00000563842 PAQR8Q8TEZ7 354 aa12.36□□□□□ -0.43
CLK3-213ENST00000563842 HSPBAP1Q96EW2 488 aa12.36□□□□□ -0.43
CLK3-213ENST00000563842 PPP3R2Q96LZ3 170 aa12.36□□□□□ -0.43
CLK3-213ENST00000563842 ERRFI1Q9UJM3 462 aaPredicted RBP12.36□□□□□ -0.43
CLK3-213ENST00000563842 NPFFR2Q9Y5X5 522 aa12.36□□□□□ -0.43
CLK3-213ENST00000563842 USP9YO00507 2555 aaPredicted RBP12.35□□□□□ -0.43
CLK3-213ENST00000563842 TMEM114B3SHH9 223 aa12.35□□□□□ -0.43
CLK3-213ENST00000563842 ACOX3O15254 700 aa12.35□□□□□ -0.43
CLK3-213ENST00000563842 LRRTM2O43300 516 aa12.35□□□□□ -0.43
CLK3-213ENST00000563842 ZNF354AO60765 605 aaPredicted RBP12.35□□□□□ -0.43
CLK3-213ENST00000563842 HSPA4LO95757 839 aa12.35□□□□□ -0.43
CLK3-213ENST00000563842 SERPINE1P05121 402 aa12.35□□□□□ -0.43
CLK3-213ENST00000563842 NAGAP17050 411 aa12.35□□□□□ -0.43
CLK3-213ENST00000563842 GRK2P25098 689 aa12.35□□□□□ -0.43
CLK3-213ENST00000563842 ASMTP46597 345 aa12.35□□□□□ -0.43
CLK3-213ENST00000563842 PSPHP78330 225 aa12.35□□□□□ -0.43
CLK3-213ENST00000563842 MGAT2Q10469 447 aa12.35□□□□□ -0.43
CLK3-213ENST00000563842 UGT3A2Q3SY77 523 aa12.35□□□□□ -0.43
CLK3-213ENST00000563842 TBCELQ5QJ74 424 aa12.35□□□□□ -0.43
CLK3-213ENST00000563842 BEND6Q5SZJ8 279 aaPredicted RBP12.35□□□□□ -0.43
CLK3-213ENST00000563842 TICAM1Q8IUC6 712 aa12.35□□□□□ -0.43
CLK3-213ENST00000563842 EID3Q8N140 333 aa12.35□□□□□ -0.43
CLK3-213ENST00000563842 FAM13CQ8NE31 585 aa12.35□□□□□ -0.43
CLK3-213ENST00000563842 OR52R1Q8NGF1 315 aa12.35□□□□□ -0.43
CLK3-213ENST00000563842 OR6Y1Q8NGX8 325 aa12.35□□□□□ -0.43
CLK3-213ENST00000563842 RELTQ969Z4 430 aa12.35□□□□□ -0.43
CLK3-213ENST00000563842 ADIPOR1Q96A54 375 aa12.35□□□□□ -0.43
CLK3-213ENST00000563842 LCORQ96JN0 433 aaPredicted RBP12.35□□□□□ -0.43
CLK3-213ENST00000563842 SECISBP2Q96T21 854 aaKnown RBP12.35□□□□□ -0.43
CLK3-213ENST00000563842 TSPAN10Q9H1Z9 355 aaPredicted RBP12.35□□□□□ -0.43
CLK3-213ENST00000563842 TUBB1Q9H4B7 451 aa12.35□□□□□ -0.43
CLK3-213ENST00000563842 IL1RL2Q9HB29 575 aa12.35□□□□□ -0.43
CLK3-213ENST00000563842 SUCOQ9UBS9 1254 aaKnown RBP12.35□□□□□ -0.43
CLK3-213ENST00000563842 BOKQ9UMX3 212 aaPredicted RBP12.35□□□□□ -0.43
CLK3-213ENST00000563842 TRGV8A0A0C4DH27 118 aa12.34□□□□□ -0.43
CLK3-213ENST00000563842 WDR91A4D1P6 747 aa12.34□□□□□ -0.43
CLK3-213ENST00000563842 WIPF3A6NGB9 483 aa12.34□□□□□ -0.43
CLK3-213ENST00000563842 MYO1GB0I1T2 1018 aa12.34□□□□□ -0.43
CLK3-213ENST00000563842 PIP5K1BO14986 540 aa12.34□□□□□ -0.43
CLK3-213ENST00000563842 LSM1O15116 133 aaKnown RBP12.34□□□□□ -0.43
CLK3-213ENST00000563842 HS6ST1O60243 411 aa12.34□□□□□ -0.43
CLK3-213ENST00000563842 PLOD3O60568 738 aa12.34□□□□□ -0.43
CLK3-213ENST00000563842 SLC19A2O60779 497 aa12.34□□□□□ -0.43
CLK3-213ENST00000563842 CBX7O95931 251 aa12.34□□□□□ -0.43
CLK3-213ENST00000563842 LDLRP01130 860 aa12.34□□□□□ -0.43
CLK3-213ENST00000563842 DHRS4L1P0CG22 281 aa12.34□□□□□ -0.43
CLK3-213ENST00000563842 CCL3P10147 92 aa12.34□□□□□ -0.43
CLK3-213ENST00000563842 ABOP16442 354 aa12.34□□□□□ -0.43
CLK3-213ENST00000563842 DRD5P21918 477 aa12.34□□□□□ -0.43
CLK3-213ENST00000563842 GPX3P22352 226 aa12.34□□□□□ -0.43
CLK3-213ENST00000563842 RPL3P39023 403 aaKnown RBP12.34□□□□□ -0.43
CLK3-213ENST00000563842 PPICP45877 212 aa12.34□□□□□ -0.43
CLK3-213ENST00000563842 NCBP2P52298 156 aaKnown RBP eCLIP12.34□□□□□ -0.43
CLK3-213ENST00000563842 PPIAP62937 165 aaKnown RBP12.34□□□□□ -0.43
CLK3-213ENST00000563842 RPL38P63173 70 aaKnown RBP12.34□□□□□ -0.43
CLK3-213ENST00000563842 DUSP2Q05923 314 aa12.34□□□□□ -0.43
CLK3-213ENST00000563842 EXOSC7Q15024 291 aaKnown RBP12.34□□□□□ -0.43
CLK3-213ENST00000563842 RPS6KA2Q15349 733 aa12.34□□□□□ -0.43
CLK3-213ENST00000563842 LTB4RQ15722 352 aa12.34□□□□□ -0.43
CLK3-213ENST00000563842 CHI3L2Q15782 390 aa12.34□□□□□ -0.43
CLK3-213ENST00000563842 GALNTL6Q49A17 601 aa12.34□□□□□ -0.43
CLK3-213ENST00000563842 ATP6AP1LQ52LC2 224 aa12.34□□□□□ -0.43
CLK3-213ENST00000563842 TRMT12Q53H54 448 aaKnown RBP12.34□□□□□ -0.43
CLK3-213ENST00000563842 ZNF628Q5EBL2 1059 aa12.34□□□□□ -0.43
CLK3-213ENST00000563842 RNFT1Q5M7Z0 435 aa12.34□□□□□ -0.43
CLK3-213ENST00000563842 FAM180BQ6P0A1 224 aa12.34□□□□□ -0.43
CLK3-213ENST00000563842 LYPD8Q6UX82 237 aa12.34□□□□□ -0.43
CLK3-213ENST00000563842 SPPL2CQ8IUH8 684 aa12.34□□□□□ -0.43
CLK3-213ENST00000563842 FBXW8Q8N3Y1 598 aa12.34□□□□□ -0.43
CLK3-213ENST00000563842 OR2T11Q8NH01 316 aa12.34□□□□□ -0.43
CLK3-213ENST00000563842 AGR3Q8TD06 166 aa12.34□□□□□ -0.43
CLK3-213ENST00000563842 MTERF3Q96E29 417 aa12.34□□□□□ -0.43
CLK3-213ENST00000563842 ZNF764Q96H86 408 aaPredicted RBP12.34□□□□□ -0.43
CLK3-213ENST00000563842 FCRL1Q96LA6 429 aa12.34□□□□□ -0.43
CLK3-213ENST00000563842 PSMG3-AS1Q96PY0 264 aa12.34□□□□□ -0.43
CLK3-213ENST00000563842 SH2D2AQ9NP31 389 aa12.34□□□□□ -0.43
CLK3-213ENST00000563842 DEPPQ9NTK1 212 aa12.34□□□□□ -0.43
CLK3-213ENST00000563842 TAS2R9Q9NYW1 312 aa12.34□□□□□ -0.43
CLK3-213ENST00000563842 ZDHHC2Q9UIJ5 367 aa12.34□□□□□ -0.43
CLK3-213ENST00000563842 EPB41L3Q9Y2J2 1087 aaPredicted RBP12.34□□□□□ -0.43
CLK3-213ENST00000563842 PTGDR2Q9Y5Y4 395 aa12.34□□□□□ -0.43
CLK3-213ENST00000563842 DOPEY1Q5JWR5 2465 aa12.33□□□□□ -0.44
CLK3-213ENST00000563842 A0A087WV62 115 aa12.33□□□□□ -0.44
CLK3-213ENST00000563842 ANKRD33BA6NCL7 494 aa12.33□□□□□ -0.44
CLK3-213ENST00000563842 TMEM233B4DJY2 109 aa12.33□□□□□ -0.44
CLK3-213ENST00000563842 PRRG2O14669 202 aa12.33□□□□□ -0.44
CLK3-213ENST00000563842 TBX19O60806 448 aa12.33□□□□□ -0.44
CLK3-213ENST00000563842 COQ9O75208 318 aa12.33□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 62.9 ms