RNA–Protein interactions for RNA: ENST00000557884.5

USP3-205, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 958 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-205ENST00000557884 HES7Q9BYE0 225 aa13.28□□□□□ -0.28
USP3-205ENST00000557884 KLHL1Q9NR64 748 aa13.28□□□□□ -0.28
USP3-205ENST00000557884 ANAPC2Q9UJX6 822 aa13.28□□□□□ -0.28
USP3-205ENST00000557884 YARS2Q9Y2Z4 477 aaKnown RBP13.28□□□□□ -0.28
USP3-205ENST00000557884 ZNF462Q96JM2 2506 aa13.28□□□□□ -0.28
USP3-205ENST00000557884 TRAV17A0A0B4J275 112 aa13.27□□□□□ -0.29
USP3-205ENST00000557884 C2orf92A0A1B0GVN3 265 aa13.27□□□□□ -0.29
USP3-205ENST00000557884 B8ZZF3 427 aa13.27□□□□□ -0.29
USP3-205ENST00000557884 ANKRD28O15084 1053 aa13.27□□□□□ -0.29
USP3-205ENST00000557884 ZNF354AO60765 605 aaPredicted RBP13.27□□□□□ -0.29
USP3-205ENST00000557884 PRAMEF2O60811 474 aa13.27□□□□□ -0.29
USP3-205ENST00000557884 EDF1O60869 148 aaKnown RBP13.27□□□□□ -0.29
USP3-205ENST00000557884 OR6B1O95007 311 aa13.27□□□□□ -0.29
USP3-205ENST00000557884 TGDSO95455 350 aa13.27□□□□□ -0.29
USP3-205ENST00000557884 DDX5P17844 614 aaKnown RBP13.27□□□□□ -0.29
USP3-205ENST00000557884 TRHRP34981 398 aaPredicted RBP13.27□□□□□ -0.29
USP3-205ENST00000557884 GPC1P35052 558 aa13.27□□□□□ -0.29
USP3-205ENST00000557884 SOX3P41225 446 aa13.27□□□□□ -0.29
USP3-205ENST00000557884 CYB561P49447 251 aa13.27□□□□□ -0.29
USP3-205ENST00000557884 HLCSP50747 726 aa13.27□□□□□ -0.29
USP3-205ENST00000557884 CDK9P50750 372 aaKnown RBP13.27□□□□□ -0.29
USP3-205ENST00000557884 NR0B1P51843 470 aaKnown RBP13.27□□□□□ -0.29
USP3-205ENST00000557884 UFM1P61960 85 aa13.27□□□□□ -0.29
USP3-205ENST00000557884 RPS6KA2Q15349 733 aa13.27□□□□□ -0.29
USP3-205ENST00000557884 PRR30Q53SZ7 412 aaPredicted RBP13.27□□□□□ -0.29
USP3-205ENST00000557884 TMEM64Q6YI46 380 aa13.27□□□□□ -0.29
USP3-205ENST00000557884 CEP70Q8NHQ1 597 aa13.27□□□□□ -0.29
USP3-205ENST00000557884 ZFP28Q8NHY6 868 aa13.27□□□□□ -0.29
USP3-205ENST00000557884 TEX37Q96LM6 180 aa13.27□□□□□ -0.29
USP3-205ENST00000557884 PRPF18Q99633 342 aaKnown RBP13.27□□□□□ -0.29
USP3-205ENST00000557884 ITPAQ9BY32 194 aa13.27□□□□□ -0.29
USP3-205ENST00000557884 NPHS2Q9NP85 383 aa13.27□□□□□ -0.29
USP3-205ENST00000557884 TCF7L2Q9NQB0 619 aa13.27□□□□□ -0.29
USP3-205ENST00000557884 ATAD3AQ9NVI7 634 aa13.27□□□□□ -0.29
USP3-205ENST00000557884 DDX18Q9NVP1 670 aaKnown RBP13.27□□□□□ -0.29
USP3-205ENST00000557884 LRFN1Q9P244 771 aa13.27□□□□□ -0.29
USP3-205ENST00000557884 DCTN4Q9UJW0 460 aa13.27□□□□□ -0.29
USP3-205ENST00000557884 DOCK10Q96BY6 2186 aa13.27□□□□□ -0.29
USP3-205ENST00000557884 A0A1W2PRB8 838 aa13.26□□□□□ -0.29
USP3-205ENST00000557884 TTLL8A6PVC2 850 aa13.26□□□□□ -0.29
USP3-205ENST00000557884 A8MVJ9 347 aa13.26□□□□□ -0.29
USP3-205ENST00000557884 E9PBE3 544 aa13.26□□□□□ -0.29
USP3-205ENST00000557884 POLR3GO15318 223 aaPredicted RBP13.26□□□□□ -0.29
USP3-205ENST00000557884 SUV39H1O43463 412 aa13.26□□□□□ -0.29
USP3-205ENST00000557884 PLOD3O60568 738 aa13.26□□□□□ -0.29
USP3-205ENST00000557884 NEURL1O76050 574 aa13.26□□□□□ -0.29
USP3-205ENST00000557884 SORBS2O94875 1100 aaKnown RBP13.26□□□□□ -0.29
USP3-205ENST00000557884 NADKO95544 446 aaPredicted RBP13.26□□□□□ -0.29
USP3-205ENST00000557884 VIMP08670 466 aaKnown RBP13.26□□□□□ -0.29
USP3-205ENST00000557884 GPX3P22352 226 aa13.26□□□□□ -0.29
USP3-205ENST00000557884 FRKP42685 505 aaPredicted RBP13.26□□□□□ -0.29
USP3-205ENST00000557884 EMDP50402 254 aa13.26□□□□□ -0.29
USP3-205ENST00000557884 MLLT10P55197 1068 aa13.26□□□□□ -0.29
USP3-205ENST00000557884 C21orf58P58505 322 aa13.26□□□□□ -0.29
USP3-205ENST00000557884 C19orf57Q0VDD7 668 aa13.26□□□□□ -0.29
USP3-205ENST00000557884 SF3A3Q12874 501 aaKnown RBP eCLIP13.26□□□□□ -0.29
USP3-205ENST00000557884 ZNF155Q12901 538 aaPredicted RBP13.26□□□□□ -0.29
USP3-205ENST00000557884 PIGGQ5H8A4 983 aa13.26□□□□□ -0.29
USP3-205ENST00000557884 ZNF766Q5HY98 468 aa13.26□□□□□ -0.29
USP3-205ENST00000557884 FHL5Q5TD97 284 aa13.26□□□□□ -0.29
USP3-205ENST00000557884 OR4F3Q6IEY1 312 aa13.26□□□□□ -0.29
USP3-205ENST00000557884 IL20RBQ6UXL0 311 aa13.26□□□□□ -0.29
USP3-205ENST00000557884 SZRD1Q7Z422 152 aa13.26□□□□□ -0.29
USP3-205ENST00000557884 ZNF227Q86WZ6 799 aa13.26□□□□□ -0.29
USP3-205ENST00000557884 CYP4Z2PQ8N1L4 340 aa13.26□□□□□ -0.29
USP3-205ENST00000557884 ZNF441Q8N8Z8 693 aa13.26□□□□□ -0.29
USP3-205ENST00000557884 MDS2Q8NDY4 140 aa13.26□□□□□ -0.29
USP3-205ENST00000557884 RFWD2Q8NHY2 731 aa13.26□□□□□ -0.29
USP3-205ENST00000557884 SLC22A8Q8TCC7 542 aa13.26□□□□□ -0.29
USP3-205ENST00000557884 ADIPOR1Q96A54 375 aa13.26□□□□□ -0.29
USP3-205ENST00000557884 COQ8BQ96D53 544 aa13.26□□□□□ -0.29
USP3-205ENST00000557884 ELP4Q96EB1 424 aa13.26□□□□□ -0.29
USP3-205ENST00000557884 DUSP26Q9BV47 211 aa13.26□□□□□ -0.29
USP3-205ENST00000557884 BHLHE41Q9C0J9 482 aaPredicted RBP13.26□□□□□ -0.29
USP3-205ENST00000557884 EPN3Q9H201 632 aa13.26□□□□□ -0.29
USP3-205ENST00000557884 ACSS1Q9NUB1 689 aaPredicted RBP13.26□□□□□ -0.29
USP3-205ENST00000557884 HPF1Q9NWY4 346 aa13.26□□□□□ -0.29
USP3-205ENST00000557884 MAP10Q9P2G4 905 aa13.26□□□□□ -0.29
USP3-205ENST00000557884 PRODH2Q9UF12 536 aa13.26□□□□□ -0.29
USP3-205ENST00000557884 ERVK-11Q9UQG0 969 aa13.26□□□□□ -0.29
USP3-205ENST00000557884 CFL2Q9Y281 166 aa13.26□□□□□ -0.29
USP3-205ENST00000557884 PCDHGA10Q9Y5H3 936 aa13.26□□□□□ -0.29
USP3-205ENST00000557884 GPR45Q9Y5Y3 372 aa13.26□□□□□ -0.29
USP3-205ENST00000557884 A0A087WV62 115 aa13.25□□□□□ -0.29
USP3-205ENST00000557884 UPK1AO00322 258 aa13.25□□□□□ -0.29
USP3-205ENST00000557884 PLOD2O00469 737 aa13.25□□□□□ -0.29
USP3-205ENST00000557884 UBDO15205 165 aa13.25□□□□□ -0.29
USP3-205ENST00000557884 CFLARO15519 480 aa13.25□□□□□ -0.29
USP3-205ENST00000557884 SLC28A2O43868 658 aa13.25□□□□□ -0.29
USP3-205ENST00000557884 SLC25A12O75746 678 aa13.25□□□□□ -0.29
USP3-205ENST00000557884 C6orf47O95873 294 aa13.25□□□□□ -0.29
USP3-205ENST00000557884 ABCB1P08183 1280 aaPredicted RBP13.25□□□□□ -0.29
USP3-205ENST00000557884 CD46P15529 392 aa13.25□□□□□ -0.29
USP3-205ENST00000557884 IL12AP29459 219 aa13.25□□□□□ -0.29
USP3-205ENST00000557884 MDH1P40925 334 aaKnown RBP13.25□□□□□ -0.29
USP3-205ENST00000557884 CLNS1AP54105 237 aaKnown RBP13.25□□□□□ -0.29
USP3-205ENST00000557884 SPANXN4Q5MJ08 99 aa13.25□□□□□ -0.29
USP3-205ENST00000557884 WDR53Q7Z5U6 358 aaPredicted RBP13.25□□□□□ -0.29
USP3-205ENST00000557884 PRR22Q8IZ63 422 aa13.25□□□□□ -0.29
USP3-205ENST00000557884 TAGAPQ8N103 731 aa13.25□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 46.1 ms