RNA–Protein interactions for RNA: ENST00000556353.1

PRPF39-209, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 2

Gene PRPF39, Length 687 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-209ENST00000556353 ADCK1Q86TW2 530 aa3.88□□□□□ -1.79
PRPF39-209ENST00000556353 PEX5LQ8IYB4 626 aa3.88□□□□□ -1.79
PRPF39-209ENST00000556353 MSANTD4Q8NCY6 345 aa3.88□□□□□ -1.79
PRPF39-209ENST00000556353 NCOA7Q8NI08 942 aa3.88□□□□□ -1.79
PRPF39-209ENST00000556353 TYMSOSQ8TAI1 123 aa3.88□□□□□ -1.79
PRPF39-209ENST00000556353 SUN5Q8TC36 379 aa3.88□□□□□ -1.79
PRPF39-209ENST00000556353 CRYGNQ8WXF5 182 aa3.88□□□□□ -1.79
PRPF39-209ENST00000556353 TOP1MTQ969P6 601 aa3.88□□□□□ -1.79
PRPF39-209ENST00000556353 SNX21Q969T3 373 aa3.88□□□□□ -1.79
PRPF39-209ENST00000556353 MRPL38Q96DV4 380 aaKnown RBP3.88□□□□□ -1.79
PRPF39-209ENST00000556353 TSGA13Q96PP4 275 aa3.88□□□□□ -1.79
PRPF39-209ENST00000556353 KLHL5Q96PQ7 755 aa3.88□□□□□ -1.79
PRPF39-209ENST00000556353 SLC7A5P2Q9GIP4 190 aa3.88□□□□□ -1.79
PRPF39-209ENST00000556353 GPR88Q9GZN0 384 aa3.88□□□□□ -1.79
PRPF39-209ENST00000556353 ADNPQ9H2P0 1102 aa3.88□□□□□ -1.79
PRPF39-209ENST00000556353 JPT2Q9H910 190 aa3.88□□□□□ -1.79
PRPF39-209ENST00000556353 NSMCE4AQ9NXX6 385 aa3.88□□□□□ -1.79
PRPF39-209ENST00000556353 HACD3Q9P035 362 aa3.88□□□□□ -1.79
PRPF39-209ENST00000556353 WDR35Q9P2L0 1181 aa3.88□□□□□ -1.79
PRPF39-209ENST00000556353 FBXL5Q9UKA1 691 aa3.88□□□□□ -1.79
PRPF39-209ENST00000556353 DUSP12Q9UNI6 340 aa3.88□□□□□ -1.79
PRPF39-209ENST00000556353 SNX8Q9Y5X2 465 aa3.88□□□□□ -1.79
PRPF39-209ENST00000556353 UBIAD1Q9Y5Z9 338 aa3.88□□□□□ -1.79
PRPF39-209ENST00000556353 NID2Q14112 1375 aa3.88□□□□□ -1.79
PRPF39-209ENST00000556353 DENND4CQ5VZ89 1909 aa3.87□□□□□ -1.79
PRPF39-209ENST00000556353 IGLV3-22A0A075B6J6 115 aa3.87□□□□□ -1.79
PRPF39-209ENST00000556353 TRAV24A0A0B4J272 114 aa3.87□□□□□ -1.79
PRPF39-209ENST00000556353 EDDM13A0A1B0GTR0 161 aa3.87□□□□□ -1.79
PRPF39-209ENST00000556353 TCRBV21S2A2A0A5A6 115 aa3.87□□□□□ -1.79
PRPF39-209ENST00000556353 C5orf67F2Z3F1 127 aa3.87□□□□□ -1.79
PRPF39-209ENST00000556353 CCL24O00175 119 aa3.87□□□□□ -1.79
PRPF39-209ENST00000556353 OGTO15294 1046 aa3.87□□□□□ -1.79
PRPF39-209ENST00000556353 TLX2O43763 284 aaPredicted RBP3.87□□□□□ -1.79
PRPF39-209ENST00000556353 B3GALNT1O75752 331 aa3.87□□□□□ -1.79
PRPF39-209ENST00000556353 CD52P31358 61 aa3.87□□□□□ -1.79
PRPF39-209ENST00000556353 ACTN2P35609 894 aa3.87□□□□□ -1.79
PRPF39-209ENST00000556353 CCR3P51677 355 aa3.87□□□□□ -1.79
PRPF39-209ENST00000556353 ERVK-16P61578 105 aa3.87□□□□□ -1.79
PRPF39-209ENST00000556353 RASGEF1BQ0VAM2 473 aa3.87□□□□□ -1.79
PRPF39-209ENST00000556353 CCDC173Q0VFZ6 552 aa3.87□□□□□ -1.79
PRPF39-209ENST00000556353 PPP2R5CQ13362 524 aa3.87□□□□□ -1.79
PRPF39-209ENST00000556353 PDIA5Q14554 519 aa3.87□□□□□ -1.79
PRPF39-209ENST00000556353 NONOQ15233 471 aaKnown RBP eCLIP3.87□□□□□ -1.79
PRPF39-209ENST00000556353 RASA2Q15283 850 aa3.87□□□□□ -1.79
PRPF39-209ENST00000556353 BOLA3Q53S33 107 aa3.87□□□□□ -1.79
PRPF39-209ENST00000556353 FGD3Q5JSP0 725 aa3.87□□□□□ -1.79
PRPF39-209ENST00000556353 HECTD3Q5T447 861 aa3.87□□□□□ -1.79
PRPF39-209ENST00000556353 GALNT17Q6IS24 598 aa3.87□□□□□ -1.79
PRPF39-209ENST00000556353 RAPH1Q70E73 1250 aa3.87□□□□□ -1.79
PRPF39-209ENST00000556353 ADGRD2Q7Z7M1 963 aa3.87□□□□□ -1.79
PRPF39-209ENST00000556353 NLRP14Q86W24 1093 aa3.87□□□□□ -1.79
PRPF39-209ENST00000556353 CCDC60Q8IWA6 550 aaPredicted RBP3.87□□□□□ -1.79
PRPF39-209ENST00000556353 CCDC65Q8IXS2 484 aa3.87□□□□□ -1.79
PRPF39-209ENST00000556353 TCEANCQ8N8B7 351 aa3.87□□□□□ -1.79
PRPF39-209ENST00000556353 TC2NQ8N9U0 490 aa3.87□□□□□ -1.79
PRPF39-209ENST00000556353 AVL9Q8NBF6 648 aa3.87□□□□□ -1.79
PRPF39-209ENST00000556353 VN1R2Q8NFZ6 395 aa3.87□□□□□ -1.79
PRPF39-209ENST00000556353 DNAJB3Q8WWF6 145 aa3.87□□□□□ -1.79
PRPF39-209ENST00000556353 LRRC45Q96CN5 670 aa3.87□□□□□ -1.79
PRPF39-209ENST00000556353 C8orf76Q96K31 380 aa3.87□□□□□ -1.79
PRPF39-209ENST00000556353 MUS81Q96NY9 551 aa3.87□□□□□ -1.79
PRPF39-209ENST00000556353 SH3GL1Q99961 368 aa3.87□□□□□ -1.79
PRPF39-209ENST00000556353 APOL6Q9BWW8 343 aa3.87□□□□□ -1.79
PRPF39-209ENST00000556353 NACA2Q9H009 215 aa3.87□□□□□ -1.79
PRPF39-209ENST00000556353 CCDC68Q9H2F9 335 aa3.87□□□□□ -1.79
PRPF39-209ENST00000556353 NCOR1P1Q9H4R4 102 aa3.87□□□□□ -1.79
PRPF39-209ENST00000556353 FANCFQ9NPI8 374 aa3.87□□□□□ -1.79
PRPF39-209ENST00000556353 TBC1D13Q9NVG8 400 aa3.87□□□□□ -1.79
PRPF39-209ENST00000556353 KIF3AQ9Y496 699 aa3.87□□□□□ -1.79
PRPF39-209ENST00000556353 KIF26AQ9ULI4 1882 aaPredicted RBP3.87□□□□□ -1.79
PRPF39-209ENST00000556353 ATRXP46100 2492 aa3.87□□□□□ -1.79
PRPF39-209ENST00000556353 NRCAMQ92823 1304 aa3.87□□□□□ -1.79
PRPF39-209ENST00000556353 IGSF9BQ9UPX0 1349 aa3.87□□□□□ -1.79
PRPF39-209ENST00000556353 COL4A2P08572 1712 aa3.87□□□□□ -1.79
PRPF39-209ENST00000556353 ATG2BQ96BY7 2078 aa3.86□□□□□ -1.79
PRPF39-209ENST00000556353 TSC2P49815 1807 aa3.86□□□□□ -1.79
PRPF39-209ENST00000556353 OBSL1O75147 1896 aa3.86□□□□□ -1.79
PRPF39-209ENST00000556353 MYO16Q9Y6X6 1858 aa3.86□□□□□ -1.79
PRPF39-209ENST00000556353 IGKV6D-21A0A0A0MT36 114 aa3.86□□□□□ -1.79
PRPF39-209ENST00000556353 IGHV3-38A0A0C4DH36 116 aa3.86□□□□□ -1.79
PRPF39-209ENST00000556353 IQCMA0A1B0GVH7 501 aa3.86□□□□□ -1.79
PRPF39-209ENST00000556353 LINC00854A0A1B0GVQ3 168 aa3.86□□□□□ -1.79
PRPF39-209ENST00000556353 TRIM49BA6NDI0 452 aa3.86□□□□□ -1.79
PRPF39-209ENST00000556353 CLDN4O14493 209 aa3.86□□□□□ -1.79
PRPF39-209ENST00000556353 POLR3GO15318 223 aaPredicted RBP3.86□□□□□ -1.79
PRPF39-209ENST00000556353 PHF1O43189 567 aaPredicted RBP3.86□□□□□ -1.79
PRPF39-209ENST00000556353 KLHL41O60662 606 aa3.86□□□□□ -1.79
PRPF39-209ENST00000556353 CYTIPO60759 359 aa3.86□□□□□ -1.79
PRPF39-209ENST00000556353 ERLIN1O75477 346 aa3.86□□□□□ -1.79
PRPF39-209ENST00000556353 ATP6AP2O75787 350 aa3.86□□□□□ -1.79
PRPF39-209ENST00000556353 STAM2O75886 525 aa3.86□□□□□ -1.79
PRPF39-209ENST00000556353 SMC2O95347 1197 aa3.86□□□□□ -1.79
PRPF39-209ENST00000556353 PGM3O95394 542 aa3.86□□□□□ -1.79
PRPF39-209ENST00000556353 STAMBPO95630 424 aa3.86□□□□□ -1.79
PRPF39-209ENST00000556353 MMP1P03956 469 aa3.86□□□□□ -1.79
PRPF39-209ENST00000556353 ATP5BP06576 529 aaKnown RBP3.86□□□□□ -1.79
PRPF39-209ENST00000556353 STMN1P16949 149 aa3.86□□□□□ -1.79
PRPF39-209ENST00000556353 ZNF24P17028 368 aa3.86□□□□□ -1.79
PRPF39-209ENST00000556353 EEF1B2P24534 225 aaKnown RBP3.86□□□□□ -1.79
PRPF39-209ENST00000556353 CTNNB1P35222 781 aa3.86□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms