RNA–Protein interactions for RNA: ENST00000545663.5

CLSTN3-216, Transcript of calsyntenin 3, humanhuman

TSL 4

Gene CLSTN3, Length 533 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-216ENST00000545663 H0YC42 278 aa13.82□□□□□ -0.2
CLSTN3-216ENST00000545663 CDC7O00311 574 aa13.82□□□□□ -0.2
CLSTN3-216ENST00000545663 CLPSP04118 112 aa13.82□□□□□ -0.2
CLSTN3-216ENST00000545663 PPP3CBP16298 524 aa13.82□□□□□ -0.2
CLSTN3-216ENST00000545663 HNF1AP20823 631 aa13.82□□□□□ -0.2
CLSTN3-216ENST00000545663 TPD52P55327 224 aaPredicted RBP13.82□□□□□ -0.2
CLSTN3-216ENST00000545663 SLC37A1P57057 533 aa13.82□□□□□ -0.2
CLSTN3-216ENST00000545663 IRX1P78414 480 aaPredicted RBP13.82□□□□□ -0.2
CLSTN3-216ENST00000545663 PCDH1Q08174 1060 aa13.82□□□□□ -0.2
CLSTN3-216ENST00000545663 ZNF844Q08AG5 666 aa13.82□□□□□ -0.2
CLSTN3-216ENST00000545663 DHX34Q14147 1143 aaKnown RBP13.82□□□□□ -0.2
CLSTN3-216ENST00000545663 ZNF267Q14586 743 aaPredicted RBP13.82□□□□□ -0.2
CLSTN3-216ENST00000545663 ZNF672Q499Z4 452 aaPredicted RBP13.82□□□□□ -0.2
CLSTN3-216ENST00000545663 MIDNQ504T8 468 aa13.82□□□□□ -0.2
CLSTN3-216ENST00000545663 PRR31Q5SQ13 230 aa13.82□□□□□ -0.2
CLSTN3-216ENST00000545663 ZNF470Q6ECI4 717 aa13.82□□□□□ -0.2
CLSTN3-216ENST00000545663 ABHD17CQ6PCB6 329 aa13.82□□□□□ -0.2
CLSTN3-216ENST00000545663 ZNF572Q7Z3I7 529 aaPredicted RBP13.82□□□□□ -0.2
CLSTN3-216ENST00000545663 TAGAPQ8N103 731 aa13.82□□□□□ -0.2
CLSTN3-216ENST00000545663 KBTBD8Q8NFY9 601 aa13.82□□□□□ -0.2
CLSTN3-216ENST00000545663 OR2L5Q8NG80 312 aa13.82□□□□□ -0.2
CLSTN3-216ENST00000545663 ACTR6Q9GZN1 396 aa13.82□□□□□ -0.2
CLSTN3-216ENST00000545663 REXO4Q9GZR2 422 aaKnown RBP13.82□□□□□ -0.2
CLSTN3-216ENST00000545663 PRDM7Q9NQW5 492 aa13.82□□□□□ -0.2
CLSTN3-216ENST00000545663 INTS10Q9NVR2 710 aaKnown RBP13.82□□□□□ -0.2
CLSTN3-216ENST00000545663 TAS2R10Q9NYW0 307 aa13.82□□□□□ -0.2
CLSTN3-216ENST00000545663 GUCA1CO95843 209 aa13.81□□□□□ -0.2
CLSTN3-216ENST00000545663 HIST1H2AGP0C0S8 130 aaPredicted RBP13.81□□□□□ -0.2
CLSTN3-216ENST00000545663 ZSCAN5DPP0CG00 497 aa13.81□□□□□ -0.2
CLSTN3-216ENST00000545663 HIST1H2ADP20671 130 aa13.81□□□□□ -0.2
CLSTN3-216ENST00000545663 COMPP49747 757 aaPredicted RBP13.81□□□□□ -0.2
CLSTN3-216ENST00000545663 CLDN15P56746 228 aa13.81□□□□□ -0.2
CLSTN3-216ENST00000545663 IGLV3-21P80748 117 aaPredicted RBP13.81□□□□□ -0.2
CLSTN3-216ENST00000545663 LSM11P83369 360 aaKnown RBP eCLIP13.81□□□□□ -0.2
CLSTN3-216ENST00000545663 CDK16Q00536 496 aa13.81□□□□□ -0.2
CLSTN3-216ENST00000545663 SETDB1Q15047 1291 aa13.81□□□□□ -0.2
CLSTN3-216ENST00000545663 PPP1R7Q15435 360 aa13.81□□□□□ -0.2
CLSTN3-216ENST00000545663 RNF111Q6ZNA4 994 aa13.81□□□□□ -0.2
CLSTN3-216ENST00000545663 VN1R5Q7Z5H4 357 aa13.81□□□□□ -0.2
CLSTN3-216ENST00000545663 THOC6Q86W42 341 aaKnown RBP13.81□□□□□ -0.2
CLSTN3-216ENST00000545663 IFNEQ86WN2 208 aa13.81□□□□□ -0.2
CLSTN3-216ENST00000545663 PALM2Q8IXS6 379 aa13.81□□□□□ -0.2
CLSTN3-216ENST00000545663 UBQLNLQ8IYU4 475 aa13.81□□□□□ -0.2
CLSTN3-216ENST00000545663 CEP112Q8N8E3 955 aa13.81□□□□□ -0.2
CLSTN3-216ENST00000545663 WDSUB1Q8N9V3 476 aa13.81□□□□□ -0.2
CLSTN3-216ENST00000545663 SPATA4Q8NEY3 305 aa13.81□□□□□ -0.2
CLSTN3-216ENST00000545663 RBM18Q96H35 190 aaKnown RBP13.81□□□□□ -0.2
CLSTN3-216ENST00000545663 HIST1H2AHQ96KK5 128 aa13.81□□□□□ -0.2
CLSTN3-216ENST00000545663 F2RL3Q96RI0 385 aa13.81□□□□□ -0.2
CLSTN3-216ENST00000545663 HIST1H2AJQ99878 128 aa13.81□□□□□ -0.2
CLSTN3-216ENST00000545663 H2AFJQ9BTM1 129 aa13.81□□□□□ -0.2
CLSTN3-216ENST00000545663 CCDC68Q9H2F9 335 aa13.81□□□□□ -0.2
CLSTN3-216ENST00000545663 DYRK1BQ9Y463 629 aa13.81□□□□□ -0.2
CLSTN3-216ENST00000545663 CMYA5Q8N3K9 4069 aa13.8□□□□□ -0.2
CLSTN3-216ENST00000545663 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP13.8□□□□□ -0.2
CLSTN3-216ENST00000545663 A0A088AWK7 358 aa13.8□□□□□ -0.2
CLSTN3-216ENST00000545663 ICOSLGO75144 302 aa13.8□□□□□ -0.2
CLSTN3-216ENST00000545663 SLC25A16P16260 332 aa13.8□□□□□ -0.2
CLSTN3-216ENST00000545663 ZNF10P21506 573 aaPredicted RBP13.8□□□□□ -0.2
CLSTN3-216ENST00000545663 USF1P22415 310 aaPredicted RBP13.8□□□□□ -0.2
CLSTN3-216ENST00000545663 PTGDSP41222 190 aa13.8□□□□□ -0.2
CLSTN3-216ENST00000545663 NPY2RP49146 381 aa13.8□□□□□ -0.2
CLSTN3-216ENST00000545663 SARNPP82979 210 aaKnown RBP13.8□□□□□ -0.2
CLSTN3-216ENST00000545663 KCTD19Q17RG1 926 aaPredicted RBP13.8□□□□□ -0.2
CLSTN3-216ENST00000545663 CTU2Q2VPK5 515 aaKnown RBP13.8□□□□□ -0.2
CLSTN3-216ENST00000545663 NCMAPQ5T1S8 102 aa13.8□□□□□ -0.2
CLSTN3-216ENST00000545663 ZNF793Q6ZN11 406 aa13.8□□□□□ -0.2
CLSTN3-216ENST00000545663 UBE3DQ7Z6J8 389 aa13.8□□□□□ -0.2
CLSTN3-216ENST00000545663 FBXL8Q96CD0 374 aa13.8□□□□□ -0.2
CLSTN3-216ENST00000545663 ALG2Q9H553 416 aa13.8□□□□□ -0.2
CLSTN3-216ENST00000545663 METTL7AQ9H8H3 244 aa13.8□□□□□ -0.2
CLSTN3-216ENST00000545663 COPS7BQ9H9Q2 264 aaPredicted RBP13.8□□□□□ -0.2
CLSTN3-216ENST00000545663 MOCS1Q9NZB8 636 aa13.8□□□□□ -0.2
CLSTN3-216ENST00000545663 BFARQ9NZS9 450 aa13.8□□□□□ -0.2
CLSTN3-216ENST00000545663 SLC22A14Q9Y267 594 aa13.8□□□□□ -0.2
CLSTN3-216ENST00000545663 C2orf92A0A1B0GVN3 265 aa13.79□□□□□ -0.2
CLSTN3-216ENST00000545663 FAM187AA6NFU0 413 aa13.79□□□□□ -0.2
CLSTN3-216ENST00000545663 WASHC1A8K0Z3 465 aa13.79□□□□□ -0.2
CLSTN3-216ENST00000545663 CAPN14A8MX76 684 aa13.79□□□□□ -0.2
CLSTN3-216ENST00000545663 RTCAO00442 366 aaKnown RBP13.79□□□□□ -0.2
CLSTN3-216ENST00000545663 ABCB7O75027 752 aa13.79□□□□□ -0.2
CLSTN3-216ENST00000545663 HAUS5O94927 633 aa13.79□□□□□ -0.2
CLSTN3-216ENST00000545663 KRT14P02533 472 aa13.79□□□□□ -0.2
CLSTN3-216ENST00000545663 CD3EP07766 207 aa13.79□□□□□ -0.2
CLSTN3-216ENST00000545663 CTAGE8P0CG41 777 aa13.79□□□□□ -0.2
CLSTN3-216ENST00000545663 CREB1P16220 341 aa13.79□□□□□ -0.2
CLSTN3-216ENST00000545663 KCNJ1P48048 391 aa13.79□□□□□ -0.2
CLSTN3-216ENST00000545663 GZMKP49863 264 aa13.79□□□□□ -0.2
CLSTN3-216ENST00000545663 PGGT1BP53609 377 aa13.79□□□□□ -0.2
CLSTN3-216ENST00000545663 DSCR9P59020 149 aa13.79□□□□□ -0.2
CLSTN3-216ENST00000545663 ACTG1P63261 375 aa13.79□□□□□ -0.2
CLSTN3-216ENST00000545663 DR1Q01658 176 aa13.79□□□□□ -0.2
CLSTN3-216ENST00000545663 SP140Q13342 867 aa13.79□□□□□ -0.2
CLSTN3-216ENST00000545663 RCN2Q14257 317 aa13.79□□□□□ -0.2
CLSTN3-216ENST00000545663 GUSBP1Q15486 140 aa13.79□□□□□ -0.2
CLSTN3-216ENST00000545663 PDCD2Q16342 344 aaPredicted RBP13.79□□□□□ -0.2
CLSTN3-216ENST00000545663 CR1LQ2VPA4 569 aa13.79□□□□□ -0.2
CLSTN3-216ENST00000545663 ADPRMQ3LIE5 342 aa13.79□□□□□ -0.2
CLSTN3-216ENST00000545663 ARMC3Q5W041 872 aa13.79□□□□□ -0.2
CLSTN3-216ENST00000545663 TRIM40Q6P9F5 258 aa13.79□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms