RNA–Protein interactions for RNA: ENST00000544547.5

LIMS1-215, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 4,461 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-215ENST00000544547 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP13.54□□□□□ -0.24
LIMS1-215ENST00000544547 MCCC2Q9HCC0 563 aa13.54□□□□□ -0.24
LIMS1-215ENST00000544547 SCML2Q9UQR0 700 aa13.54□□□□□ -0.24
LIMS1-215ENST00000544547 GNB5O14775 395 aa13.54□□□□□ -0.24
LIMS1-215ENST00000544547 VEZF1Q14119 521 aa13.54□□□□□ -0.24
LIMS1-215ENST00000544547 DUSP7Q16829 419 aa13.54□□□□□ -0.24
LIMS1-215ENST00000544547 PSRC1Q6PGN9 363 aaPredicted RBP13.54□□□□□ -0.24
LIMS1-215ENST00000544547 CHST9Q7L1S5 443 aa13.54□□□□□ -0.24
LIMS1-215ENST00000544547 GPR150Q8NGU9 434 aa13.54□□□□□ -0.24
LIMS1-215ENST00000544547 TRMT61BQ9BVS5 477 aaKnown RBP13.54□□□□□ -0.24
LIMS1-215ENST00000544547 FBXL3Q9UKT7 428 aa13.54□□□□□ -0.24
LIMS1-215ENST00000544547 MYADML2A6NDP7 307 aa13.54□□□□□ -0.24
LIMS1-215ENST00000544547 MROH6A6NGR9 719 aa13.54□□□□□ -0.24
LIMS1-215ENST00000544547 PRSS23O95084 383 aa13.54□□□□□ -0.24
LIMS1-215ENST00000544547 GRK5P34947 590 aa13.54□□□□□ -0.24
LIMS1-215ENST00000544547 AP1S1P61966 158 aa13.54□□□□□ -0.24
LIMS1-215ENST00000544547 ASAH1Q13510 395 aa13.54□□□□□ -0.24
LIMS1-215ENST00000544547 DOC2AQ14183 400 aa13.54□□□□□ -0.24
LIMS1-215ENST00000544547 PROKR2Q8NFJ6 384 aa13.54□□□□□ -0.24
LIMS1-215ENST00000544547 TMEM185BQ9H7F4 350 aa13.54□□□□□ -0.24
LIMS1-215ENST00000544547 SLC6A13Q9NSD5 602 aa13.54□□□□□ -0.24
LIMS1-215ENST00000544547 ZNF639Q9UID6 485 aa13.54□□□□□ -0.24
LIMS1-215ENST00000544547 IKZF2Q9UKS7 526 aa13.54□□□□□ -0.24
LIMS1-215ENST00000544547 PCDHGB1Q9Y5G3 927 aa13.54□□□□□ -0.24
LIMS1-215ENST00000544547 C2orf78A6NCI8 922 aa13.54□□□□□ -0.24
LIMS1-215ENST00000544547 TPPPO94811 219 aa13.54□□□□□ -0.24
LIMS1-215ENST00000544547 ITPKBP27987 946 aa13.54□□□□□ -0.24
LIMS1-215ENST00000544547 GJA5P36382 358 aa13.54□□□□□ -0.24
LIMS1-215ENST00000544547 PREPP48147 710 aa13.54□□□□□ -0.24
LIMS1-215ENST00000544547 PITPNBP48739 271 aa13.54□□□□□ -0.24
LIMS1-215ENST00000544547 PRPF38BQ5VTL8 546 aaKnown RBP13.54□□□□□ -0.24
LIMS1-215ENST00000544547 C17orf107Q6ZR85 190 aa13.54□□□□□ -0.24
LIMS1-215ENST00000544547 NPAS4Q8IUM7 802 aa13.54□□□□□ -0.24
LIMS1-215ENST00000544547 ZNF285Q96NJ3 590 aa13.54□□□□□ -0.24
LIMS1-215ENST00000544547 REEP4Q9H6H4 257 aa13.54□□□□□ -0.24
LIMS1-215ENST00000544547 KCNK12Q9HB15 430 aa13.54□□□□□ -0.24
LIMS1-215ENST00000544547 ABHD14A-ACY1A0A1B0GW23 586 aa13.53□□□□□ -0.24
LIMS1-215ENST00000544547 ADAP00813 363 aa13.53□□□□□ -0.24
LIMS1-215ENST00000544547 UBL4AP11441 157 aa13.53□□□□□ -0.24
LIMS1-215ENST00000544547 M6PRP20645 277 aa13.53□□□□□ -0.24
LIMS1-215ENST00000544547 PYCR1P32322 319 aa13.53□□□□□ -0.24
LIMS1-215ENST00000544547 RGRP47804 291 aa13.53□□□□□ -0.24
LIMS1-215ENST00000544547 PGFP49763 221 aa13.53□□□□□ -0.24
LIMS1-215ENST00000544547 TPMTP51580 245 aa13.53□□□□□ -0.24
LIMS1-215ENST00000544547 TMEM145Q8NBT3 493 aa13.53□□□□□ -0.24
LIMS1-215ENST00000544547 FBXO22Q8NEZ5 403 aa13.53□□□□□ -0.24
LIMS1-215ENST00000544547 NDC1Q9BTX1 674 aa13.53□□□□□ -0.24
LIMS1-215ENST00000544547 SRRQ9GZT4 340 aa13.53□□□□□ -0.24
LIMS1-215ENST00000544547 POT1Q9NUX5 634 aa13.53□□□□□ -0.24
LIMS1-215ENST00000544547 SIRT5Q9NXA8 310 aa13.53□□□□□ -0.24
LIMS1-215ENST00000544547 POP4O95707 220 aaKnown RBP13.53□□□□□ -0.24
LIMS1-215ENST00000544547 IDSP22304 550 aa13.53□□□□□ -0.24
LIMS1-215ENST00000544547 MC1RQ01726 317 aa13.53□□□□□ -0.24
LIMS1-215ENST00000544547 ZNF763Q0D2J5 394 aa13.53□□□□□ -0.24
LIMS1-215ENST00000544547 COL28A1Q2UY09 1125 aa13.53□□□□□ -0.24
LIMS1-215ENST00000544547 SPIN4Q56A73 249 aa13.53□□□□□ -0.24
LIMS1-215ENST00000544547 CTSL3PQ5NE16 218 aa13.53□□□□□ -0.24
LIMS1-215ENST00000544547 ZDHHC20Q5W0Z9 365 aa13.53□□□□□ -0.24
LIMS1-215ENST00000544547 TRMT10AQ8TBZ6 339 aaKnown RBP13.53□□□□□ -0.24
LIMS1-215ENST00000544547 ZNF416Q9BWM5 594 aa13.53□□□□□ -0.24
LIMS1-215ENST00000544547 ZNF436Q9C0F3 470 aaPredicted RBP13.53□□□□□ -0.24
LIMS1-215ENST00000544547 ZDHHC3Q9NYG2 299 aa13.53□□□□□ -0.24
LIMS1-215ENST00000544547 COL24A1Q17RW2 1714 aa13.53□□□□□ -0.24
LIMS1-215ENST00000544547 TRIP11Q15643 1979 aa13.53□□□□□ -0.24
LIMS1-215ENST00000544547 RIIAD1A6NNX1 92 aa13.53□□□□□ -0.24
LIMS1-215ENST00000544547 ERVH48-1M5A8F1 160 aa13.53□□□□□ -0.24
LIMS1-215ENST00000544547 TOR1AO14656 332 aa13.53□□□□□ -0.24
LIMS1-215ENST00000544547 TRIM3O75382 744 aaPredicted RBP13.53□□□□□ -0.24
LIMS1-215ENST00000544547 IGFBP1P08833 259 aaPredicted RBP13.53□□□□□ -0.24
LIMS1-215ENST00000544547 MLLT11Q13015 90 aaPredicted RBP13.53□□□□□ -0.24
LIMS1-215ENST00000544547 ZNF311Q5JNZ3 666 aa13.53□□□□□ -0.24
LIMS1-215ENST00000544547 OR8S1Q8NH09 359 aa13.53□□□□□ -0.24
LIMS1-215ENST00000544547 CIDECQ96AQ7 238 aaPredicted RBP13.53□□□□□ -0.24
LIMS1-215ENST00000544547 THSD1Q9NS62 852 aa13.53□□□□□ -0.24
LIMS1-215ENST00000544547 TMEM45AQ9NWC5 275 aa13.53□□□□□ -0.24
LIMS1-215ENST00000544547 FNIP2Q9P278 1114 aa13.53□□□□□ -0.24
LIMS1-215ENST00000544547 RASD1Q9Y272 281 aa13.53□□□□□ -0.24
LIMS1-215ENST00000544547 XIRP1Q702N8 1843 aaKnown RBP13.53□□□□□ -0.24
LIMS1-215ENST00000544547 GABRR3A8MPY1 467 aa13.53□□□□□ -0.24
LIMS1-215ENST00000544547 SLC43A1O75387 559 aa13.53□□□□□ -0.24
LIMS1-215ENST00000544547 NFATC1O95644 943 aa13.53□□□□□ -0.24
LIMS1-215ENST00000544547 PRNPP04156 253 aa13.53□□□□□ -0.24
LIMS1-215ENST00000544547 ETV1P50549 477 aa13.53□□□□□ -0.24
LIMS1-215ENST00000544547 MCCD1P59942 119 aaPredicted RBP13.53□□□□□ -0.24
LIMS1-215ENST00000544547 CYHR1Q6ZMK1 362 aa13.53□□□□□ -0.24
LIMS1-215ENST00000544547 FUBP3Q96I24 572 aaKnown RBP eCLIP13.53□□□□□ -0.243e-6■■■■□ 21.1
LIMS1-215ENST00000544547 DCLRE1CQ96SD1 692 aaKnown RBP13.53□□□□□ -0.24
LIMS1-215ENST00000544547 GSX2Q9BZM3 304 aa13.53□□□□□ -0.24
LIMS1-215ENST00000544547 IFT46Q9NQC8 304 aa13.53□□□□□ -0.24
LIMS1-215ENST00000544547 C5AR2Q9P296 337 aa13.53□□□□□ -0.24
LIMS1-215ENST00000544547 GLOD5A6NK44 160 aa13.52□□□□□ -0.24
LIMS1-215ENST00000544547 M0R3H8 397 aa13.52□□□□□ -0.24
LIMS1-215ENST00000544547 FAAHO00519 579 aa13.52□□□□□ -0.24
LIMS1-215ENST00000544547 SLC25A12O75746 678 aa13.52□□□□□ -0.24
LIMS1-215ENST00000544547 NUDT1P36639 197 aa13.52□□□□□ -0.24
LIMS1-215ENST00000544547 SRP9P49458 86 aaKnown RBP13.52□□□□□ -0.24
LIMS1-215ENST00000544547 OR6K6Q8NGW6 343 aa13.52□□□□□ -0.24
LIMS1-215ENST00000544547 OR14C36Q8NHC7 312 aa13.52□□□□□ -0.24
LIMS1-215ENST00000544547 C1orf74Q96LT6 269 aa13.52□□□□□ -0.24
LIMS1-215ENST00000544547 FANCFQ9NPI8 374 aa13.52□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms