RNA–Protein interactions for RNA: ENST00000542407.5

PDLIM5-221, Transcript of PDZ and LIM domain 5, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene PDLIM5, Length 2,979 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-221ENST00000542407 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP7.59□□□□□ -1.193e-8■■■□□ 14.8
PDLIM5-221ENST00000542407 MUC13Q9H3R2 512 aa7.59□□□□□ -1.19
PDLIM5-221ENST00000542407 ACTR8Q9H981 624 aa7.59□□□□□ -1.19
PDLIM5-221ENST00000542407 SEMA4BQ9NPR2 832 aaPredicted RBP7.59□□□□□ -1.19
PDLIM5-221ENST00000542407 OBP2AQ9NY56 170 aa7.59□□□□□ -1.19
PDLIM5-221ENST00000542407 NKIRAS2Q9NYR9 191 aa7.59□□□□□ -1.19
PDLIM5-221ENST00000542407 DNAJB9Q9UBS3 223 aa7.59□□□□□ -1.19
PDLIM5-221ENST00000542407 CD84Q9UIB8 345 aa7.59□□□□□ -1.19
PDLIM5-221ENST00000542407 MKLN1Q9UL63 735 aa7.59□□□□□ -1.19
PDLIM5-221ENST00000542407 TBC1D24Q9ULP9 559 aa7.59□□□□□ -1.19
PDLIM5-221ENST00000542407 NAALAD2Q9Y3Q0 740 aa7.59□□□□□ -1.19
PDLIM5-221ENST00000542407 OARD1Q9Y530 152 aa7.59□□□□□ -1.19
PDLIM5-221ENST00000542407 MN1Q10571 1320 aaPredicted RBP7.59□□□□□ -1.19
PDLIM5-221ENST00000542407 HEPACAM2A8MVW5 462 aa7.59□□□□□ -1.2
PDLIM5-221ENST00000542407 A8MXE2 369 aa7.59□□□□□ -1.2
PDLIM5-221ENST00000542407 VEGFDO43915 354 aa7.59□□□□□ -1.2
PDLIM5-221ENST00000542407 NR2C1P13056 603 aa7.59□□□□□ -1.2
PDLIM5-221ENST00000542407 ZNF250P15622 560 aa7.59□□□□□ -1.2
PDLIM5-221ENST00000542407 RAB4AP20338 218 aa7.59□□□□□ -1.2
PDLIM5-221ENST00000542407 S100PP25815 95 aa7.59□□□□□ -1.2
PDLIM5-221ENST00000542407 CCR7P32248 378 aa7.59□□□□□ -1.2
PDLIM5-221ENST00000542407 UGT2B10P36537 528 aa7.59□□□□□ -1.2
PDLIM5-221ENST00000542407 TGFBR2P37173 567 aa7.59□□□□□ -1.2
PDLIM5-221ENST00000542407 CTSKP43235 329 aa7.59□□□□□ -1.2
PDLIM5-221ENST00000542407 EEFSECP57772 596 aaKnown RBP7.59□□□□□ -1.2
PDLIM5-221ENST00000542407 FOXO1Q12778 655 aa7.59□□□□□ -1.2
PDLIM5-221ENST00000542407 FNDC3BQ53EP0 1204 aaKnown RBP7.59□□□□□ -1.2
PDLIM5-221ENST00000542407 XKR7Q5GH72 579 aa7.59□□□□□ -1.2
PDLIM5-221ENST00000542407 TMEM184AQ6ZMB5 413 aa7.59□□□□□ -1.2
PDLIM5-221ENST00000542407 PARS2Q7L3T8 475 aaKnown RBP7.59□□□□□ -1.2
PDLIM5-221ENST00000542407 SSX9Q7RTT3 188 aa7.59□□□□□ -1.2
PDLIM5-221ENST00000542407 GPR149Q86SP6 731 aa7.59□□□□□ -1.2
PDLIM5-221ENST00000542407 UBTD2Q8WUN7 234 aa7.59□□□□□ -1.2
PDLIM5-221ENST00000542407 ST8SIA4Q92187 359 aa7.59□□□□□ -1.2
PDLIM5-221ENST00000542407 TCEAL3Q969E4 200 aa7.59□□□□□ -1.2
PDLIM5-221ENST00000542407 FAM162AQ96A26 154 aa7.59□□□□□ -1.2
PDLIM5-221ENST00000542407 ESAMQ96AP7 390 aa7.59□□□□□ -1.2
PDLIM5-221ENST00000542407 ULK4Q96C45 1275 aa7.59□□□□□ -1.2
PDLIM5-221ENST00000542407 LRIG1Q96JA1 1093 aa7.59□□□□□ -1.2
PDLIM5-221ENST00000542407 HDHD5Q9BXW7 423 aa7.59□□□□□ -1.2
PDLIM5-221ENST00000542407 ITPAQ9BY32 194 aa7.59□□□□□ -1.2
PDLIM5-221ENST00000542407 SLC22A4Q9H015 551 aa7.59□□□□□ -1.2
PDLIM5-221ENST00000542407 OR51E2Q9H255 320 aa7.59□□□□□ -1.2
PDLIM5-221ENST00000542407 PIGUQ9H490 435 aa7.59□□□□□ -1.2
PDLIM5-221ENST00000542407 MAGEL2Q9UJ55 1249 aa7.59□□□□□ -1.2
PDLIM5-221ENST00000542407 GRIP1Q9Y3R0 1128 aa7.59□□□□□ -1.2
PDLIM5-221ENST00000542407 PEX16Q9Y5Y5 336 aa7.59□□□□□ -1.2
PDLIM5-221ENST00000542407 SPTBN5Q9NRC6 3674 aaKnown RBP7.58□□□□□ -1.2
PDLIM5-221ENST00000542407 ASPDHA6ND91 283 aa7.58□□□□□ -1.2
PDLIM5-221ENST00000542407 CCDC182A6NF36 153 aa7.58□□□□□ -1.2
PDLIM5-221ENST00000542407 TMEM210A6NLX4 147 aa7.58□□□□□ -1.2
PDLIM5-221ENST00000542407 MYO1GB0I1T2 1018 aa7.58□□□□□ -1.2
PDLIM5-221ENST00000542407 H0YIV9 168 aa7.58□□□□□ -1.2
PDLIM5-221ENST00000542407 OR7A17O14581 309 aa7.58□□□□□ -1.2
PDLIM5-221ENST00000542407 LINC01565O15544 149 aa7.58□□□□□ -1.2
PDLIM5-221ENST00000542407 OR2B3O76000 313 aa7.58□□□□□ -1.2
PDLIM5-221ENST00000542407 NFATC1O95644 943 aa7.58□□□□□ -1.2
PDLIM5-221ENST00000542407 IGFBP5P24593 272 aa7.58□□□□□ -1.2
PDLIM5-221ENST00000542407 AOAHP28039 575 aa7.58□□□□□ -1.2
PDLIM5-221ENST00000542407 HTR1EP28566 365 aa7.58□□□□□ -1.2
PDLIM5-221ENST00000542407 ZNF91Q05481 1191 aa7.58□□□□□ -1.2
PDLIM5-221ENST00000542407 IRF3Q14653 427 aa7.58□□□□□ -1.2
PDLIM5-221ENST00000542407 NKG7Q16617 165 aa7.58□□□□□ -1.2
PDLIM5-221ENST00000542407 ARMCX4Q5H9R4 360 aa7.58□□□□□ -1.2
PDLIM5-221ENST00000542407 C9orf64Q5T6V5 341 aa7.58□□□□□ -1.2
PDLIM5-221ENST00000542407 VITQ6UXI7 678 aa7.58□□□□□ -1.2
PDLIM5-221ENST00000542407 LIPIQ6XZB0 460 aa7.58□□□□□ -1.2
PDLIM5-221ENST00000542407 DET1Q7L5Y6 550 aa7.58□□□□□ -1.2
PDLIM5-221ENST00000542407 TRMT11Q7Z4G4 463 aaKnown RBP7.58□□□□□ -1.2
PDLIM5-221ENST00000542407 YIPF7Q8N8F6 280 aa7.58□□□□□ -1.2
PDLIM5-221ENST00000542407 MOSPD2Q8NHP6 518 aa7.58□□□□□ -1.2
PDLIM5-221ENST00000542407 PCNPQ8WW12 178 aaKnown RBP7.58□□□□□ -1.2
PDLIM5-221ENST00000542407 SCAMP4Q969E2 229 aa7.58□□□□□ -1.2
PDLIM5-221ENST00000542407 RDH12Q96NR8 316 aa7.58□□□□□ -1.2
PDLIM5-221ENST00000542407 ZNF382Q96SR6 550 aa7.58□□□□□ -1.2
PDLIM5-221ENST00000542407 CDCA3Q99618 268 aaPredicted RBP7.58□□□□□ -1.2
PDLIM5-221ENST00000542407 COPS8Q99627 209 aa7.58□□□□□ -1.2
PDLIM5-221ENST00000542407 APOL4Q9BPW4 351 aa7.58□□□□□ -1.2
PDLIM5-221ENST00000542407 THUMPD3Q9BV44 507 aaKnown RBP7.58□□□□□ -1.2
PDLIM5-221ENST00000542407 UGT2B28Q9BY64 529 aa7.58□□□□□ -1.2
PDLIM5-221ENST00000542407 ALX4Q9H161 411 aaPredicted RBP7.58□□□□□ -1.2
PDLIM5-221ENST00000542407 ESRP2Q9H6T0 727 aaKnown RBP7.58□□□□□ -1.2
PDLIM5-221ENST00000542407 SDR39U1Q9NRG7 319 aaPredicted RBP7.58□□□□□ -1.2
PDLIM5-221ENST00000542407 DZANK1Q9NVP4 752 aa7.58□□□□□ -1.2
PDLIM5-221ENST00000542407 GDE1Q9NZC3 331 aa7.58□□□□□ -1.2
PDLIM5-221ENST00000542407 LEF1Q9UJU2 399 aaPredicted RBP7.58□□□□□ -1.2
PDLIM5-221ENST00000542407 LYVE1Q9Y5Y7 322 aa7.58□□□□□ -1.2
PDLIM5-221ENST00000542407 A0A096LPI6 279 aa7.58□□□□□ -1.2
PDLIM5-221ENST00000542407 CLDN24A6NM45 220 aa7.58□□□□□ -1.2
PDLIM5-221ENST00000542407 FFAR2O15552 330 aa7.58□□□□□ -1.2
PDLIM5-221ENST00000542407 SLC22A3O75751 556 aa7.58□□□□□ -1.2
PDLIM5-221ENST00000542407 PRSS23O95084 383 aa7.58□□□□□ -1.2
PDLIM5-221ENST00000542407 SCAF4O95104 1147 aaKnown RBP7.58□□□□□ -1.2
PDLIM5-221ENST00000542407 MLYCDO95822 493 aa7.58□□□□□ -1.2
PDLIM5-221ENST00000542407 GP1BAP07359 652 aa7.58□□□□□ -1.2
PDLIM5-221ENST00000542407 DGKAP23743 735 aa7.58□□□□□ -1.2
PDLIM5-221ENST00000542407 C21orf33P30042 268 aaPredicted RBP7.58□□□□□ -1.2
PDLIM5-221ENST00000542407 OPRD1P41143 372 aa7.58□□□□□ -1.2
PDLIM5-221ENST00000542407 DHPSP49366 369 aaPredicted RBP7.58□□□□□ -1.2
PDLIM5-221ENST00000542407 FOXM1Q08050 763 aa7.58□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms