RNA–Protein interactions for RNA: ENST00000540022.5

TNFRSF1A-213, Transcript of TNF receptor superfamily member 1A, humanhuman

TSL 1 (best) BASIC

Gene TNFRSF1A, Length 1,527 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF1A-213ENST00000540022 ZCCHC3Q9NUD5 404 aaKnown RBP17.64■□□□□ 0.41
TNFRSF1A-213ENST00000540022 WDR70Q9NW82 654 aa17.64■□□□□ 0.41
TNFRSF1A-213ENST00000540022 PTGFRNQ9P2B2 879 aa17.64■□□□□ 0.41
TNFRSF1A-213ENST00000540022 C19orf25Q9UFG5 118 aaPredicted RBP17.64■□□□□ 0.41
TNFRSF1A-213ENST00000540022 CLCA3PQ9Y6N3 262 aa17.64■□□□□ 0.41
TNFRSF1A-213ENST00000540022 A0A087WV62 115 aa17.63■□□□□ 0.41
TNFRSF1A-213ENST00000540022 RRP8O43159 456 aaKnown RBP17.63■□□□□ 0.41
TNFRSF1A-213ENST00000540022 EMC8O43402 210 aa17.63■□□□□ 0.41
TNFRSF1A-213ENST00000540022 CBX7O95931 251 aa17.63■□□□□ 0.41
TNFRSF1A-213ENST00000540022 IGHEP01854 428 aa17.63■□□□□ 0.41
TNFRSF1A-213ENST00000540022 PSME3P61289 254 aa17.63■□□□□ 0.41
TNFRSF1A-213ENST00000540022 EEF1A2Q05639 463 aaKnown RBP17.63■□□□□ 0.41
TNFRSF1A-213ENST00000540022 FUT7Q11130 342 aa17.63■□□□□ 0.41
TNFRSF1A-213ENST00000540022 SELPLGQ14242 412 aa17.63■□□□□ 0.41
TNFRSF1A-213ENST00000540022 SSPNQ14714 243 aa17.63■□□□□ 0.41
TNFRSF1A-213ENST00000540022 EXOSC7Q15024 291 aaKnown RBP17.63■□□□□ 0.41
TNFRSF1A-213ENST00000540022 RABL3Q5HYI8 236 aa17.63■□□□□ 0.41
TNFRSF1A-213ENST00000540022 SZRD1Q7Z422 152 aa17.63■□□□□ 0.41
TNFRSF1A-213ENST00000540022 VASH2Q86V25 355 aa17.63■□□□□ 0.41
TNFRSF1A-213ENST00000540022 DEFB107AQ8IZN7 70 aa17.63■□□□□ 0.41
TNFRSF1A-213ENST00000540022 PGAM4Q8N0Y7 254 aa17.63■□□□□ 0.41
TNFRSF1A-213ENST00000540022 PNPT1Q8TCS8 783 aaKnown RBP17.63■□□□□ 0.41
TNFRSF1A-213ENST00000540022 SFXN5Q8TD22 340 aa17.63■□□□□ 0.41
TNFRSF1A-213ENST00000540022 HOPXQ9BPY8 73 aaPredicted RBP17.63■□□□□ 0.41
TNFRSF1A-213ENST00000540022 CPPED1Q9BRF8 314 aaPredicted RBP17.63■□□□□ 0.41
TNFRSF1A-213ENST00000540022 C3orf14Q9HBI5 128 aa17.63■□□□□ 0.41
TNFRSF1A-213ENST00000540022 DDX18Q9NVP1 670 aaKnown RBP17.63■□□□□ 0.41
TNFRSF1A-213ENST00000540022 SDAD1Q9NVU7 687 aaKnown RBP eCLIP17.63■□□□□ 0.41
TNFRSF1A-213ENST00000540022 NTMQ9P121 344 aa17.63■□□□□ 0.41
TNFRSF1A-213ENST00000540022 C19orf53Q9UNZ5 99 aaPredicted RBP17.63■□□□□ 0.41
TNFRSF1A-213ENST00000540022 ERVK-19Q9WJR5 959 aa17.63■□□□□ 0.41
TNFRSF1A-213ENST00000540022 IGSF10Q6WRI0 2623 aa17.63■□□□□ 0.41
TNFRSF1A-213ENST00000540022 CLIC1O00299 241 aa17.62■□□□□ 0.41
TNFRSF1A-213ENST00000540022 NME6O75414 186 aaPredicted RBP17.62■□□□□ 0.41
TNFRSF1A-213ENST00000540022 DDAH2O95865 285 aa17.62■□□□□ 0.41
TNFRSF1A-213ENST00000540022 IFI6P09912 130 aa17.62■□□□□ 0.41
TNFRSF1A-213ENST00000540022 LIFP15018 202 aa17.62■□□□□ 0.41
TNFRSF1A-213ENST00000540022 SSTR4P31391 388 aa17.62■□□□□ 0.41
TNFRSF1A-213ENST00000540022 RASSF2P50749 326 aa17.62■□□□□ 0.41
TNFRSF1A-213ENST00000540022 PRKAG1P54619 331 aa17.62■□□□□ 0.41
TNFRSF1A-213ENST00000540022 MTPNP58546 118 aa17.62■□□□□ 0.41
TNFRSF1A-213ENST00000540022 DUSP8Q13202 625 aa17.62■□□□□ 0.41
TNFRSF1A-213ENST00000540022 TP53BP2Q13625 1128 aa17.62■□□□□ 0.41
TNFRSF1A-213ENST00000540022 C6orf163Q5TEZ5 329 aa17.62■□□□□ 0.41
TNFRSF1A-213ENST00000540022 SAXO2Q658L1 398 aa17.62■□□□□ 0.41
TNFRSF1A-213ENST00000540022 PAPD4Q6PIY7 484 aaKnown RBP17.62■□□□□ 0.41
TNFRSF1A-213ENST00000540022 KIRREL2Q6UWL6 708 aa17.62■□□□□ 0.41
TNFRSF1A-213ENST00000540022 C16orf89Q6UX73 402 aa17.62■□□□□ 0.41
TNFRSF1A-213ENST00000540022 LRRC69Q6ZNQ3 347 aa17.62■□□□□ 0.41
TNFRSF1A-213ENST00000540022 C6orf120Q7Z4R8 191 aa17.62■□□□□ 0.41
TNFRSF1A-213ENST00000540022 PPP1R32Q7Z5V6 425 aa17.62■□□□□ 0.41
TNFRSF1A-213ENST00000540022 SLC15A3Q8IY34 581 aa17.62■□□□□ 0.41
TNFRSF1A-213ENST00000540022 ZNF321PQ8N8H1 164 aa17.62■□□□□ 0.41
TNFRSF1A-213ENST00000540022 ZNF248Q8NDW4 579 aa17.62■□□□□ 0.41
TNFRSF1A-213ENST00000540022 NUP43Q8NFH3 380 aa17.62■□□□□ 0.41
TNFRSF1A-213ENST00000540022 DAZLQ92904 295 aaKnown RBP17.62■□□□□ 0.41
TNFRSF1A-213ENST00000540022 KIAA1143Q96AT1 154 aaPredicted RBP17.62■□□□□ 0.41
TNFRSF1A-213ENST00000540022 SENP5Q96HI0 755 aaPredicted RBP17.62■□□□□ 0.41
TNFRSF1A-213ENST00000540022 SMG1Q96Q15 3661 aaKnown RBP17.62■□□□□ 0.41
TNFRSF1A-213ENST00000540022 BTBD10Q9BSF8 475 aa17.62■□□□□ 0.41
TNFRSF1A-213ENST00000540022 NDE1Q9NXR1 346 aa17.62■□□□□ 0.41
TNFRSF1A-213ENST00000540022 SCN2AQ99250 2005 aa17.62■□□□□ 0.41
TNFRSF1A-213ENST00000540022 GIMAP1-GIMAP5A0A087WTJ2 511 aa17.62■□□□□ 0.41
TNFRSF1A-213ENST00000540022 SOCS6O14544 535 aa17.62■□□□□ 0.41
TNFRSF1A-213ENST00000540022 PCDH17O14917 1159 aa17.62■□□□□ 0.41
TNFRSF1A-213ENST00000540022 GYG2O15488 501 aa17.62■□□□□ 0.41
TNFRSF1A-213ENST00000540022 SEC24DO94855 1032 aaPredicted RBP17.62■□□□□ 0.41
TNFRSF1A-213ENST00000540022 OTX2P32243 289 aa17.62■□□□□ 0.41
TNFRSF1A-213ENST00000540022 CHI3L1P36222 383 aaPredicted RBP17.62■□□□□ 0.41
TNFRSF1A-213ENST00000540022 MVDP53602 400 aa17.62■□□□□ 0.41
TNFRSF1A-213ENST00000540022 PRR5P85299 388 aa17.62■□□□□ 0.41
TNFRSF1A-213ENST00000540022 IL10RAQ13651 578 aa17.62■□□□□ 0.41
TNFRSF1A-213ENST00000540022 PCOLCEQ15113 449 aa17.62■□□□□ 0.41
TNFRSF1A-213ENST00000540022 GPR155Q7Z3F1 870 aa17.62■□□□□ 0.41
TNFRSF1A-213ENST00000540022 SPACA3Q8IXA5 215 aa17.62■□□□□ 0.41
TNFRSF1A-213ENST00000540022 NFAM1Q8NET5 270 aaPredicted RBP17.62■□□□□ 0.41
TNFRSF1A-213ENST00000540022 OR52R1Q8NGF1 315 aa17.62■□□□□ 0.41
TNFRSF1A-213ENST00000540022 OR8J3Q8NGG0 315 aa17.62■□□□□ 0.41
TNFRSF1A-213ENST00000540022 OR56A1Q8NGH5 318 aa17.62■□□□□ 0.41
TNFRSF1A-213ENST00000540022 OR14A16Q8NHC5 309 aa17.62■□□□□ 0.41
TNFRSF1A-213ENST00000540022 SLC2A12Q8TD20 617 aa17.62■□□□□ 0.41
TNFRSF1A-213ENST00000540022 ZNF721Q8TF20 911 aa17.62■□□□□ 0.41
TNFRSF1A-213ENST00000540022 MOAP1Q96BY2 351 aa17.62■□□□□ 0.41
TNFRSF1A-213ENST00000540022 NEURL3Q96EH8 262 aa17.62■□□□□ 0.41
TNFRSF1A-213ENST00000540022 GIMAP5Q96F15 307 aa17.62■□□□□ 0.41
TNFRSF1A-213ENST00000540022 FBXL20Q96IG2 436 aa17.62■□□□□ 0.41
TNFRSF1A-213ENST00000540022 LPAR4Q99677 370 aa17.62■□□□□ 0.41
TNFRSF1A-213ENST00000540022 OR8D2Q9GZM6 311 aa17.62■□□□□ 0.41
TNFRSF1A-213ENST00000540022 GPATCH2Q9NW75 528 aa17.62■□□□□ 0.41
TNFRSF1A-213ENST00000540022 CMTM6Q9NX76 183 aa17.62■□□□□ 0.41
TNFRSF1A-213ENST00000540022 GMEB1Q9Y692 573 aa17.62■□□□□ 0.41
TNFRSF1A-213ENST00000540022 SAGE2PA6NJ88 616 aa17.61■□□□□ 0.41
TNFRSF1A-213ENST00000540022 DYRK3O43781 588 aa17.61■□□□□ 0.41
TNFRSF1A-213ENST00000540022 PSMG1O95456 288 aa17.61■□□□□ 0.41
TNFRSF1A-213ENST00000540022 CLPSP04118 112 aa17.61■□□□□ 0.41
TNFRSF1A-213ENST00000540022 IGKV3-11P04433 115 aa17.61■□□□□ 0.41
TNFRSF1A-213ENST00000540022 WT1P19544 449 aaPredicted RBP17.61■□□□□ 0.41
TNFRSF1A-213ENST00000540022 GPR143P51810 404 aa17.61■□□□□ 0.41
TNFRSF1A-213ENST00000540022 SLC7A2P52569 658 aa17.61■□□□□ 0.41
TNFRSF1A-213ENST00000540022 CASP9P55211 416 aa17.61■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms