RNA–Protein interactions for RNA: ENST00000534296.5

CD44-238, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-238ENST00000534296 TSPAN2O60636 221 aa2.18□□□□□ -2.06
CD44-238ENST00000534296 SEC22BO75396 215 aa2.18□□□□□ -2.06
CD44-238ENST00000534296 FCER2P06734 321 aa2.18□□□□□ -2.06
CD44-238ENST00000534296 PGK2P07205 417 aa2.18□□□□□ -2.06
CD44-238ENST00000534296 PTMSP20962 102 aa2.18□□□□□ -2.06
CD44-238ENST00000534296 GLRA1P23415 457 aa2.18□□□□□ -2.06
CD44-238ENST00000534296 OR1D2P34982 312 aa2.18□□□□□ -2.06
CD44-238ENST00000534296 TNFRSF4P43489 277 aa2.18□□□□□ -2.06
CD44-238ENST00000534296 NDST1P52848 882 aa2.18□□□□□ -2.06
CD44-238ENST00000534296 MTTPP55157 894 aa2.18□□□□□ -2.06
CD44-238ENST00000534296 YBEYP58557 167 aaPredicted RBP2.18□□□□□ -2.06
CD44-238ENST00000534296 SLC26A5P58743 744 aa2.18□□□□□ -2.06
CD44-238ENST00000534296 NLRP11P59045 1033 aaKnown RBP2.18□□□□□ -2.06
CD44-238ENST00000534296 STARD6P59095 220 aa2.18□□□□□ -2.06
CD44-238ENST00000534296 RPS4XP62701 263 aaKnown RBP2.18□□□□□ -2.06
CD44-238ENST00000534296 HERVK_113P63132 956 aa2.18□□□□□ -2.06
CD44-238ENST00000534296 ERVK-8P63133 956 aa2.18□□□□□ -2.06
CD44-238ENST00000534296 SRYQ05066 204 aa2.18□□□□□ -2.06
CD44-238ENST00000534296 MFGE8Q08431 387 aaPredicted RBP2.18□□□□□ -2.06
CD44-238ENST00000534296 SNX1Q13596 522 aa2.18□□□□□ -2.06
CD44-238ENST00000534296 KLF5Q13887 457 aaPredicted RBP2.18□□□□□ -2.06
CD44-238ENST00000534296 EIF2B1Q14232 305 aaKnown RBP2.18□□□□□ -2.06
CD44-238ENST00000534296 TPD52L1Q16890 204 aaPredicted RBP2.18□□□□□ -2.06
CD44-238ENST00000534296 TTC31Q49AM3 519 aaPredicted RBP2.18□□□□□ -2.06
CD44-238ENST00000534296 OR6B2Q6IFH4 312 aa2.18□□□□□ -2.06
CD44-238ENST00000534296 MFSD7Q6UXD7 560 aa2.18□□□□□ -2.06
CD44-238ENST00000534296 WDR88Q6ZMY6 472 aa2.18□□□□□ -2.06
CD44-238ENST00000534296 ADAMTSL2Q86TH1 951 aa2.18□□□□□ -2.06
CD44-238ENST00000534296 RANBP3LQ86VV4 465 aaPredicted RBP2.18□□□□□ -2.06
CD44-238ENST00000534296 OR52J3Q8NH60 311 aa2.18□□□□□ -2.06
CD44-238ENST00000534296 CD99L2Q8TCZ2 262 aa2.18□□□□□ -2.06
CD44-238ENST00000534296 GPR137Q96N19 417 aa2.18□□□□□ -2.06
CD44-238ENST00000534296 SPATA13Q96N96 652 aa2.18□□□□□ -2.06
CD44-238ENST00000534296 FAM111AQ96PZ2 611 aa2.18□□□□□ -2.06
CD44-238ENST00000534296 ERVK-6Q9BXR3 956 aa2.18□□□□□ -2.06
CD44-238ENST00000534296 CARD9Q9H257 536 aa2.18□□□□□ -2.06
CD44-238ENST00000534296 FAM124BQ9H5Z6 455 aaPredicted RBP2.18□□□□□ -2.06
CD44-238ENST00000534296 CUTCQ9NTM9 273 aa2.18□□□□□ -2.06
CD44-238ENST00000534296 ABCD2Q9UBJ2 740 aa2.18□□□□□ -2.06
CD44-238ENST00000534296 ZNF107Q9UII5 783 aaPredicted RBP2.18□□□□□ -2.06
CD44-238ENST00000534296 ZNF490Q9ULM2 529 aaPredicted RBP2.18□□□□□ -2.06
CD44-238ENST00000534296 RPH3AQ9Y2J0 694 aaPredicted RBP2.18□□□□□ -2.06
CD44-238ENST00000534296 TDRD15B5MCY1 1934 aaKnown RBP2.18□□□□□ -2.06
CD44-238ENST00000534296 KIF7Q2M1P5 1343 aa2.17□□□□□ -2.06
CD44-238ENST00000534296 ZNF318Q5VUA4 2279 aa2.17□□□□□ -2.06
CD44-238ENST00000534296 BICDL2A1A5D9 508 aa2.17□□□□□ -2.06
CD44-238ENST00000534296 GLTPD2A6NH11 291 aa2.17□□□□□ -2.06
CD44-238ENST00000534296 SRRM5B3KS81 715 aa2.17□□□□□ -2.06
CD44-238ENST00000534296 C11orf98E9PRG8 122 aa2.17□□□□□ -2.06
CD44-238ENST00000534296 LGALS8O00214 317 aa2.17□□□□□ -2.06
CD44-238ENST00000534296 MCF2LO15068 1137 aa2.17□□□□□ -2.06
CD44-238ENST00000534296 PHF1O43189 567 aaPredicted RBP2.17□□□□□ -2.06
CD44-238ENST00000534296 TXNL1O43396 289 aa2.17□□□□□ -2.06
CD44-238ENST00000534296 PDE5AO76074 875 aa2.17□□□□□ -2.06
CD44-238ENST00000534296 GOT2P00505 430 aaKnown RBP2.17□□□□□ -2.06
CD44-238ENST00000534296 FCARP24071 287 aa2.17□□□□□ -2.06
CD44-238ENST00000534296 ELK3P41970 407 aa2.17□□□□□ -2.06
CD44-238ENST00000534296 MTIF2P46199 727 aaKnown RBP2.17□□□□□ -2.06
CD44-238ENST00000534296 NPY2RP49146 381 aa2.17□□□□□ -2.06
CD44-238ENST00000534296 NAPAP54920 295 aa2.17□□□□□ -2.06
CD44-238ENST00000534296 PPIAP62937 165 aaKnown RBP2.17□□□□□ -2.06
CD44-238ENST00000534296 RUNX3Q13761 415 aa2.17□□□□□ -2.06
CD44-238ENST00000534296 GAMTQ14353 236 aa2.17□□□□□ -2.06
CD44-238ENST00000534296 SIX1Q15475 284 aaPredicted RBP2.17□□□□□ -2.06
CD44-238ENST00000534296 CLPPQ16740 277 aaPredicted RBP2.17□□□□□ -2.06
CD44-238ENST00000534296 PARP6Q2NL67 630 aa2.17□□□□□ -2.06
CD44-238ENST00000534296 HKDC1Q2TB90 917 aa2.17□□□□□ -2.06
CD44-238ENST00000534296 POM121L1PQ3SYA9 428 aa2.17□□□□□ -2.06
CD44-238ENST00000534296 UNC50Q53HI1 259 aa2.17□□□□□ -2.06
CD44-238ENST00000534296 VWA2Q5GFL6 755 aa2.17□□□□□ -2.06
CD44-238ENST00000534296 BEND6Q5SZJ8 279 aaPredicted RBP2.17□□□□□ -2.06
CD44-238ENST00000534296 IRGCQ6NXR0 463 aa2.17□□□□□ -2.06
CD44-238ENST00000534296 NEK5Q6P3R8 708 aa2.17□□□□□ -2.06
CD44-238ENST00000534296 SCYL2Q6P3W7 929 aa2.17□□□□□ -2.06
CD44-238ENST00000534296 GOLGA7Q7Z5G4 137 aa2.17□□□□□ -2.06
CD44-238ENST00000534296 SERINC5Q86VE9 423 aa2.17□□□□□ -2.06
CD44-238ENST00000534296 OR8H1Q8NGG4 311 aa2.17□□□□□ -2.06
CD44-238ENST00000534296 OR4Q3Q8NH05 313 aa2.17□□□□□ -2.06
CD44-238ENST00000534296 TBCKQ8TEA7 893 aa2.17□□□□□ -2.06
CD44-238ENST00000534296 GIPC3Q8TF64 312 aa2.17□□□□□ -2.06
CD44-238ENST00000534296 C11orf52Q96A22 123 aa2.17□□□□□ -2.06
CD44-238ENST00000534296 MRPL53Q96EL3 112 aaKnown RBP2.17□□□□□ -2.06
CD44-238ENST00000534296 DEFB118Q96PH6 123 aa2.17□□□□□ -2.06
CD44-238ENST00000534296 KCNK16Q96T55 309 aa2.17□□□□□ -2.06
CD44-238ENST00000534296 Q9HAA7 133 aa2.17□□□□□ -2.06
CD44-238ENST00000534296 KCNMB3Q9NPA1 279 aa2.17□□□□□ -2.06
CD44-238ENST00000534296 TIGARQ9NQ88 270 aa2.17□□□□□ -2.06
CD44-238ENST00000534296 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP2.17□□□□□ -2.06
CD44-238ENST00000534296 GDAP2Q9NXN4 497 aa2.17□□□□□ -2.06
CD44-238ENST00000534296 ZNF581Q9P0T4 197 aa2.17□□□□□ -2.06
CD44-238ENST00000534296 CLIP2Q9UDT6 1046 aa2.17□□□□□ -2.06
CD44-238ENST00000534296 CHMP2BQ9UQN3 213 aa2.17□□□□□ -2.06
CD44-238ENST00000534296 VSIG4Q9Y279 399 aa2.17□□□□□ -2.06
CD44-238ENST00000534296 ZNF175Q9Y473 711 aa2.17□□□□□ -2.06
CD44-238ENST00000534296 ATG4BQ9Y4P1 393 aa2.17□□□□□ -2.06
CD44-238ENST00000534296 DHX29Q7Z478 1369 aaKnown RBP2.17□□□□□ -2.06
CD44-238ENST00000534296 A0A087WWV3 80 aa2.16□□□□□ -2.06
CD44-238ENST00000534296 SH3PXD2BA1X283 911 aa2.16□□□□□ -2.06
CD44-238ENST00000534296 ZNF840PA6NDX5 716 aa2.16□□□□□ -2.06
CD44-238ENST00000534296 PRPSAP2O60256 369 aa2.16□□□□□ -2.06
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms