RNA–Protein interactions for RNA: ENST00000525685.5

CD44-219, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 728 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-219ENST00000525685 ZKSCAN8Q15776 578 aaPredicted RBP3.3□□□□□ -1.88
CD44-219ENST00000525685 FAM189A2Q15884 450 aa3.3□□□□□ -1.88
CD44-219ENST00000525685 MAPK6Q16659 721 aa3.3□□□□□ -1.88
CD44-219ENST00000525685 CLLU1OSQ5K130 101 aa3.3□□□□□ -1.88
CD44-219ENST00000525685 TWF2Q6IBS0 349 aaKnown RBP3.3□□□□□ -1.88
CD44-219ENST00000525685 GET4Q7L5D6 327 aaPredicted RBP3.3□□□□□ -1.88
CD44-219ENST00000525685 CPEB2Q7Z5Q1 589 aaKnown RBP3.3□□□□□ -1.88
CD44-219ENST00000525685 ECHDC2Q86YB7 292 aa3.3□□□□□ -1.88
CD44-219ENST00000525685 LRRC43Q8N309 656 aa3.3□□□□□ -1.88
CD44-219ENST00000525685 METTL4Q8N3J2 472 aa3.3□□□□□ -1.88
CD44-219ENST00000525685 CCDC185Q8N715 623 aa3.3□□□□□ -1.88
CD44-219ENST00000525685 ATAD1Q8NBU5 361 aa3.3□□□□□ -1.88
CD44-219ENST00000525685 TMEM161BQ8NDZ6 487 aa3.3□□□□□ -1.88
CD44-219ENST00000525685 CORO2AQ92828 525 aa3.3□□□□□ -1.88
CD44-219ENST00000525685 MR1Q95460 341 aa3.3□□□□□ -1.88
CD44-219ENST00000525685 DNAJC19Q96DA6 116 aa3.3□□□□□ -1.88
CD44-219ENST00000525685 OMA1Q96E52 524 aa3.3□□□□□ -1.88
CD44-219ENST00000525685 CCDC51Q96ER9 411 aa3.3□□□□□ -1.88
CD44-219ENST00000525685 PIGQQ9BRB3 760 aa3.3□□□□□ -1.88
CD44-219ENST00000525685 SYT11Q9BT88 431 aa3.3□□□□□ -1.88
CD44-219ENST00000525685 TRIM9Q9C026 710 aa3.3□□□□□ -1.88
CD44-219ENST00000525685 TMEM117Q9H0C3 514 aa3.3□□□□□ -1.88
CD44-219ENST00000525685 CUEDC2Q9H467 287 aa3.3□□□□□ -1.88
CD44-219ENST00000525685 NXF3Q9H4D5 531 aaKnown RBP3.3□□□□□ -1.88
CD44-219ENST00000525685 YY1AP1Q9H869 796 aa3.3□□□□□ -1.88
CD44-219ENST00000525685 MTHFD2LQ9H903 347 aaPredicted RBP3.3□□□□□ -1.88
CD44-219ENST00000525685 MAGEF1Q9HAY2 307 aa3.3□□□□□ -1.88
CD44-219ENST00000525685 PARVGQ9HBI0 331 aa3.3□□□□□ -1.88
CD44-219ENST00000525685 THEGQ9P2T0 379 aa3.3□□□□□ -1.88
CD44-219ENST00000525685 FBXL5Q9UKA1 691 aa3.3□□□□□ -1.88
CD44-219ENST00000525685 FBXL4Q9UKA2 621 aa3.3□□□□□ -1.88
CD44-219ENST00000525685 CDH7Q9ULB5 785 aa3.3□□□□□ -1.88
CD44-219ENST00000525685 PCDHGA1Q9Y5H4 931 aa3.3□□□□□ -1.88
CD44-219ENST00000525685 MYH11P35749 1972 aa3.3□□□□□ -1.88
CD44-219ENST00000525685 PDCD11Q14690 1871 aaKnown RBP3.29□□□□□ -1.88
CD44-219ENST00000525685 PLXNA4Q9HCM2 1894 aa3.29□□□□□ -1.88
CD44-219ENST00000525685 A0A0J9YWU9 116 aa3.29□□□□□ -1.88
CD44-219ENST00000525685 A0A1B0GUA9 196 aa3.29□□□□□ -1.88
CD44-219ENST00000525685 C2orf92A0A1B0GVN3 265 aa3.29□□□□□ -1.88
CD44-219ENST00000525685 C5orf67F2Z3F1 127 aa3.29□□□□□ -1.88
CD44-219ENST00000525685 H0Y626 953 aa3.29□□□□□ -1.88
CD44-219ENST00000525685 H0YCG3 227 aa3.29□□□□□ -1.88
CD44-219ENST00000525685 H7C423 109 aa3.29□□□□□ -1.88
CD44-219ENST00000525685 K7ERI5 159 aa3.29□□□□□ -1.88
CD44-219ENST00000525685 RTCAO00442 366 aaKnown RBP3.29□□□□□ -1.88
CD44-219ENST00000525685 KLRC4O43908 158 aa3.29□□□□□ -1.88
CD44-219ENST00000525685 GRAP2O75791 330 aa3.29□□□□□ -1.88
CD44-219ENST00000525685 PIGRP01833 764 aa3.29□□□□□ -1.88
CD44-219ENST00000525685 ZNF883P0CG24 379 aa3.29□□□□□ -1.88
CD44-219ENST00000525685 GOT1P17174 413 aa3.29□□□□□ -1.88
CD44-219ENST00000525685 GAP43P17677 238 aa3.29□□□□□ -1.88
CD44-219ENST00000525685 GIFP27352 417 aa3.29□□□□□ -1.88
CD44-219ENST00000525685 PDHA2P29803 388 aa3.29□□□□□ -1.88
CD44-219ENST00000525685 DUTP33316 252 aaKnown RBP3.29□□□□□ -1.88
CD44-219ENST00000525685 CTNNA1P35221 906 aaKnown RBP3.29□□□□□ -1.88
CD44-219ENST00000525685 CTNNB1P35222 781 aa3.29□□□□□ -1.88
CD44-219ENST00000525685 SYKP43405 635 aa3.29□□□□□ -1.88
CD44-219ENST00000525685 LUMP51884 338 aaPredicted RBP3.29□□□□□ -1.88
CD44-219ENST00000525685 NDUFA8P51970 172 aa3.29□□□□□ -1.88
CD44-219ENST00000525685 ASIC1P78348 528 aa3.29□□□□□ -1.88
CD44-219ENST00000525685 GTF2BQ00403 316 aa3.29□□□□□ -1.88
CD44-219ENST00000525685 FASTKD3Q14CZ7 662 aaKnown RBP3.29□□□□□ -1.88
CD44-219ENST00000525685 DCAF4L1Q3SXM0 396 aa3.29□□□□□ -1.88
CD44-219ENST00000525685 IQCCQ4KMZ1 466 aa3.29□□□□□ -1.88
CD44-219ENST00000525685 ARMCX4Q5H9R4 360 aa3.29□□□□□ -1.88
CD44-219ENST00000525685 ATF7IP2Q5U623 682 aa3.29□□□□□ -1.88
CD44-219ENST00000525685 SLC39A4Q6P5W5 647 aa3.29□□□□□ -1.88
CD44-219ENST00000525685 C11orf88Q6PI97 169 aa3.29□□□□□ -1.88
CD44-219ENST00000525685 DHRS11Q6UWP2 260 aa3.29□□□□□ -1.88
CD44-219ENST00000525685 GPR141Q7Z602 305 aa3.29□□□□□ -1.88
CD44-219ENST00000525685 CCDC91Q7Z6B0 441 aa3.29□□□□□ -1.88
CD44-219ENST00000525685 CREBRFQ8IUR6 639 aa3.29□□□□□ -1.88
CD44-219ENST00000525685 CCDC65Q8IXS2 484 aa3.29□□□□□ -1.88
CD44-219ENST00000525685 DEFB123Q8N688 67 aa3.29□□□□□ -1.88
CD44-219ENST00000525685 SMYD1Q8NB12 490 aa3.29□□□□□ -1.88
CD44-219ENST00000525685 CNNM3Q8NE01 707 aa3.29□□□□□ -1.88
CD44-219ENST00000525685 RPLP0P6Q8NHW5 317 aa3.29□□□□□ -1.88
CD44-219ENST00000525685 GDAP1Q8TB36 358 aa3.29□□□□□ -1.88
CD44-219ENST00000525685 ARNTL2Q8WYA1 636 aa3.29□□□□□ -1.88
CD44-219ENST00000525685 PAGE5Q96GU1 130 aa3.29□□□□□ -1.88
CD44-219ENST00000525685 ZNF599Q96NL3 588 aa3.29□□□□□ -1.88
CD44-219ENST00000525685 CASD1Q96PB1 797 aa3.29□□□□□ -1.88
CD44-219ENST00000525685 TGS1Q96RS0 853 aaKnown RBP3.29□□□□□ -1.88
CD44-219ENST00000525685 CDX2Q99626 313 aaPredicted RBP3.29□□□□□ -1.88
CD44-219ENST00000525685 HNRNPABQ99729 332 aaKnown RBP3.29□□□□□ -1.88
CD44-219ENST00000525685 C17orf62Q9BQA9 187 aa3.29□□□□□ -1.88
CD44-219ENST00000525685 PI4K2AQ9BTU6 479 aa3.29□□□□□ -1.88
CD44-219ENST00000525685 MRPL9Q9BYD2 267 aaKnown RBP3.29□□□□□ -1.88
CD44-219ENST00000525685 TRIM15Q9C019 465 aa3.29□□□□□ -1.88
CD44-219ENST00000525685 TRIM6Q9C030 488 aaPredicted RBP3.29□□□□□ -1.88
CD44-219ENST00000525685 CXCL16Q9H2A7 254 aa3.29□□□□□ -1.88
CD44-219ENST00000525685 BLZF1Q9H2G9 400 aa3.29□□□□□ -1.88
CD44-219ENST00000525685 UBQLN3Q9H347 655 aa3.29□□□□□ -1.88
CD44-219ENST00000525685 CWH43Q9H720 699 aa3.29□□□□□ -1.88
CD44-219ENST00000525685 IARS2Q9NSE4 1012 aaKnown RBP3.29□□□□□ -1.88
CD44-219ENST00000525685 NLGN3Q9NZ94 848 aa3.29□□□□□ -1.88
CD44-219ENST00000525685 NUDT4Q9NZJ9 180 aa3.29□□□□□ -1.88
CD44-219ENST00000525685 DNAJB9Q9UBS3 223 aa3.29□□□□□ -1.88
CD44-219ENST00000525685 NOCTQ9UK39 431 aaKnown RBP3.29□□□□□ -1.88
CD44-219ENST00000525685 PILRBQ9UKJ0 227 aa3.29□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms