RNA–Protein interactions for RNA: ENST00000525241.1

CD44-215, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 440 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-215ENST00000525241 VCPP55072 806 aaKnown RBP3.22□□□□□ -1.89
CD44-215ENST00000525241 NLRP11P59045 1033 aaKnown RBP3.22□□□□□ -1.89
CD44-215ENST00000525241 CD226Q15762 336 aa3.22□□□□□ -1.89
CD44-215ENST00000525241 CLPPQ16740 277 aaPredicted RBP3.22□□□□□ -1.89
CD44-215ENST00000525241 SHROOM1Q2M3G4 852 aaPredicted RBP3.22□□□□□ -1.89
CD44-215ENST00000525241 SLC10A5Q5PT55 438 aa3.22□□□□□ -1.89
CD44-215ENST00000525241 SEL1L2Q5TEA6 688 aa3.22□□□□□ -1.89
CD44-215ENST00000525241 CGB2Q6NT52 195 aa3.22□□□□□ -1.89
CD44-215ENST00000525241 MFSD7Q6UXD7 560 aa3.22□□□□□ -1.89
CD44-215ENST00000525241 DLEU7Q6UYE1 221 aa3.22□□□□□ -1.89
CD44-215ENST00000525241 ADAMTSL5Q6ZMM2 481 aa3.22□□□□□ -1.89
CD44-215ENST00000525241 STOX1Q6ZVD7 989 aa3.22□□□□□ -1.89
CD44-215ENST00000525241 RAPH1Q70E73 1250 aa3.22□□□□□ -1.89
CD44-215ENST00000525241 SNX32Q86XE0 403 aa3.22□□□□□ -1.89
CD44-215ENST00000525241 ZBED8Q8IZ13 594 aa3.22□□□□□ -1.89
CD44-215ENST00000525241 CHCHD4Q8N4Q1 142 aa3.22□□□□□ -1.89
CD44-215ENST00000525241 ZNF713Q8N859 430 aaPredicted RBP3.22□□□□□ -1.89
CD44-215ENST00000525241 PPP1R16AQ96I34 528 aa3.22□□□□□ -1.89
CD44-215ENST00000525241 SPATA13Q96N96 652 aa3.22□□□□□ -1.89
CD44-215ENST00000525241 NAP1L3Q99457 506 aaPredicted RBP3.22□□□□□ -1.89
CD44-215ENST00000525241 FAM173AQ9BQD7 235 aa3.22□□□□□ -1.89
CD44-215ENST00000525241 SLITRK2Q9H156 845 aa3.22□□□□□ -1.89
CD44-215ENST00000525241 ABCG4Q9H172 646 aa3.22□□□□□ -1.89
CD44-215ENST00000525241 NDUFA13Q9P0J0 144 aa3.22□□□□□ -1.89
CD44-215ENST00000525241 Q9UF83 564 aa3.22□□□□□ -1.89
CD44-215ENST00000525241 APPL1Q9UKG1 709 aa3.22□□□□□ -1.89
CD44-215ENST00000525241 ENTPD4Q9Y227 616 aa3.22□□□□□ -1.89
CD44-215ENST00000525241 TDRKHQ9Y2W6 561 aaKnown RBP3.22□□□□□ -1.89
CD44-215ENST00000525241 A8MU10 97 aa3.21□□□□□ -1.9
CD44-215ENST00000525241 KERAO60938 352 aa3.21□□□□□ -1.9
CD44-215ENST00000525241 NUDT14O95848 222 aa3.21□□□□□ -1.9
CD44-215ENST00000525241 OAS2P29728 719 aaKnown RBP3.21□□□□□ -1.9
CD44-215ENST00000525241 HNRNPFP52597 415 aaKnown RBP3.21□□□□□ -1.9
CD44-215ENST00000525241 HAND2P61296 217 aa3.21□□□□□ -1.9
CD44-215ENST00000525241 PAX2Q02962 417 aa3.21□□□□□ -1.9
CD44-215ENST00000525241 ZNF85Q03923 595 aa3.21□□□□□ -1.9
CD44-215ENST00000525241 GFPT1Q06210 699 aaPredicted RBP3.21□□□□□ -1.9
CD44-215ENST00000525241 PRR30Q53SZ7 412 aaPredicted RBP3.21□□□□□ -1.9
CD44-215ENST00000525241 ATRAIDQ6UW56 229 aa3.21□□□□□ -1.9
CD44-215ENST00000525241 PRSS48Q7RTY5 328 aa3.21□□□□□ -1.9
CD44-215ENST00000525241 BNIPLQ7Z465 357 aa3.21□□□□□ -1.9
CD44-215ENST00000525241 PEX5LQ8IYB4 626 aa3.21□□□□□ -1.9
CD44-215ENST00000525241 ATP6V0BQ99437 205 aa3.21□□□□□ -1.9
CD44-215ENST00000525241 TNMDQ9H2S6 317 aa3.21□□□□□ -1.9
CD44-215ENST00000525241 STARD5Q9NSY2 213 aa3.21□□□□□ -1.9
CD44-215ENST00000525241 RAI14Q9P0K7 980 aa3.21□□□□□ -1.9
CD44-215ENST00000525241 SENP1Q9P0U3 644 aa3.21□□□□□ -1.9
CD44-215ENST00000525241 COPS7AQ9UBW8 275 aa3.21□□□□□ -1.9
CD44-215ENST00000525241 TRIM10Q9UDY6 481 aa3.21□□□□□ -1.9
CD44-215ENST00000525241 FAM153AQ9UHL3 310 aa3.21□□□□□ -1.9
CD44-215ENST00000525241 RSPH14Q9UHP6 348 aa3.21□□□□□ -1.9
CD44-215ENST00000525241 NPIPA5A0A0B4J1W7 369 aa3.2□□□□□ -1.9
CD44-215ENST00000525241 A0A0U1RQG5 324 aaPredicted RBP3.2□□□□□ -1.9
CD44-215ENST00000525241 TRABD2BA6NFA1 517 aa3.2□□□□□ -1.9
CD44-215ENST00000525241 CCT8L1PA6NM43 557 aa3.2□□□□□ -1.9
CD44-215ENST00000525241 NPIPA5E9PKD4 350 aa3.2□□□□□ -1.9
CD44-215ENST00000525241 CCER2I3L3R5 266 aa3.2□□□□□ -1.9
CD44-215ENST00000525241 RANBP6O60518 1105 aaKnown RBP3.2□□□□□ -1.9
CD44-215ENST00000525241 PDE5AO76074 875 aa3.2□□□□□ -1.9
CD44-215ENST00000525241 SYNGR4O95473 234 aa3.2□□□□□ -1.9
CD44-215ENST00000525241 PRAMEF12O95522 483 aa3.2□□□□□ -1.9
CD44-215ENST00000525241 DNAH10OSP0CZ25 163 aa3.2□□□□□ -1.9
CD44-215ENST00000525241 KLK2P20151 261 aa3.2□□□□□ -1.9
CD44-215ENST00000525241 MARCKSP29966 332 aaPredicted RBP3.2□□□□□ -1.9
CD44-215ENST00000525241 CHRNA3P32297 505 aa3.2□□□□□ -1.9
CD44-215ENST00000525241 NPY2RP49146 381 aa3.2□□□□□ -1.9
CD44-215ENST00000525241 ZNF33BQ06732 778 aa3.2□□□□□ -1.9
CD44-215ENST00000525241 PPP1R8Q12972 351 aaKnown RBP3.2□□□□□ -1.9
CD44-215ENST00000525241 MICAQ29983 383 aa3.2□□□□□ -1.9
CD44-215ENST00000525241 ZNF528Q3MIS6 628 aa3.2□□□□□ -1.9
CD44-215ENST00000525241 CMPK2Q5EBM0 449 aa3.2□□□□□ -1.9
CD44-215ENST00000525241 HERC4Q5GLZ8 1057 aaPredicted RBP3.2□□□□□ -1.9
CD44-215ENST00000525241 MS4A13Q5J8X5 152 aa3.2□□□□□ -1.9
CD44-215ENST00000525241 MARC1Q5VT66 337 aa3.2□□□□□ -1.9
CD44-215ENST00000525241 MSANTD4Q8NCY6 345 aa3.2□□□□□ -1.9
CD44-215ENST00000525241 TMEM185AQ8NFB2 350 aa3.2□□□□□ -1.9
CD44-215ENST00000525241 TMEM37Q8WXS4 190 aa3.2□□□□□ -1.9
CD44-215ENST00000525241 TMEM45BQ96B21 275 aa3.2□□□□□ -1.9
CD44-215ENST00000525241 SERAC1Q96JX3 654 aa3.2□□□□□ -1.9
CD44-215ENST00000525241 TEX13AQ9BXU3 409 aaPredicted RBP3.2□□□□□ -1.9
CD44-215ENST00000525241 NLNQ9BYT8 704 aa3.2□□□□□ -1.9
CD44-215ENST00000525241 TRIM9Q9C026 710 aa3.2□□□□□ -1.9
CD44-215ENST00000525241 HPS4Q9NQG7 708 aa3.2□□□□□ -1.9
CD44-215ENST00000525241 CENPMQ9NSP4 180 aa3.2□□□□□ -1.9
CD44-215ENST00000525241 IMPAD1Q9NX62 359 aa3.2□□□□□ -1.9
CD44-215ENST00000525241 LHX3Q9UBR4 397 aa3.2□□□□□ -1.9
CD44-215ENST00000525241 SLC9A8Q9Y2E8 581 aa3.2□□□□□ -1.9
CD44-215ENST00000525241 RPH3AQ9Y2J0 694 aaPredicted RBP3.2□□□□□ -1.9
CD44-215ENST00000525241 ZNF175Q9Y473 711 aa3.2□□□□□ -1.9
CD44-215ENST00000525241 RAD54L2Q9Y4B4 1467 aa3.2□□□□□ -1.9
CD44-215ENST00000525241 ZMYM6O95789 1325 aa3.19□□□□□ -1.9
CD44-215ENST00000525241 TRBV2A0A0J9YWF9 115 aa3.19□□□□□ -1.9
CD44-215ENST00000525241 KLLNB2CW77 178 aa3.19□□□□□ -1.9
CD44-215ENST00000525241 DDX39AO00148 427 aaKnown RBP3.19□□□□□ -1.9
CD44-215ENST00000525241 EI24O14681 340 aa3.19□□□□□ -1.9
CD44-215ENST00000525241 TYROBPO43914 113 aa3.19□□□□□ -1.9
CD44-215ENST00000525241 WNT2P09544 360 aa3.19□□□□□ -1.9
CD44-215ENST00000525241 LAMP1P11279 417 aa3.19□□□□□ -1.9
CD44-215ENST00000525241 SRP54P61011 504 aaKnown RBP3.19□□□□□ -1.9
CD44-215ENST00000525241 CXCL6P80162 114 aa3.19□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms