RNA–Protein interactions for RNA: ENST00000513643.5

RNF4-221, Transcript of ring finger protein 4, humanhuman

TSL 3

Gene RNF4, Length 516 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-221ENST00000513643 C3orf30Q96M34 536 aa8.95□□□□□ -0.98
RNF4-221ENST00000513643 SECISBP2Q96T21 854 aaKnown RBP8.95□□□□□ -0.98
RNF4-221ENST00000513643 SORT1Q99523 831 aa8.95□□□□□ -0.98
RNF4-221ENST00000513643 CCT7Q99832 543 aa8.95□□□□□ -0.98
RNF4-221ENST00000513643 EBPLQ9BY08 206 aa8.95□□□□□ -0.98
RNF4-221ENST00000513643 LRTM1Q9HBL6 345 aa8.95□□□□□ -0.98
RNF4-221ENST00000513643 SEC14L3Q9UDX4 400 aa8.95□□□□□ -0.98
RNF4-221ENST00000513643 CNOT11Q9UKZ1 510 aaKnown RBP8.95□□□□□ -0.98
RNF4-221ENST00000513643 SLC5A6Q9Y289 635 aa8.95□□□□□ -0.98
RNF4-221ENST00000513643 EPB41L3Q9Y2J2 1087 aaPredicted RBP8.95□□□□□ -0.98
RNF4-221ENST00000513643 GPR55Q9Y2T6 319 aaPredicted RBP8.95□□□□□ -0.98
RNF4-221ENST00000513643 TMED5Q9Y3A6 229 aa8.95□□□□□ -0.98
RNF4-221ENST00000513643 POLR3HQ9Y535 204 aaPredicted RBP8.95□□□□□ -0.98
RNF4-221ENST00000513643 ZNF780BQ9Y6R6 833 aa8.95□□□□□ -0.98
RNF4-221ENST00000513643 ZNF407Q9C0G0 2248 aa8.95□□□□□ -0.98
RNF4-221ENST00000513643 A0A087WV62 115 aa8.94□□□□□ -0.98
RNF4-221ENST00000513643 A0A1B0GVC2 190 aa8.94□□□□□ -0.98
RNF4-221ENST00000513643 TMEM114B3SHH9 223 aa8.94□□□□□ -0.98
RNF4-221ENST00000513643 PIP5K1BO14986 540 aa8.94□□□□□ -0.98
RNF4-221ENST00000513643 ITM2AO43736 263 aa8.94□□□□□ -0.98
RNF4-221ENST00000513643 SEC22BO75396 215 aa8.94□□□□□ -0.98
RNF4-221ENST00000513643 BCAS2O75934 225 aaPredicted RBP8.94□□□□□ -0.98
RNF4-221ENST00000513643 SLITRK5O94991 958 aa8.94□□□□□ -0.98
RNF4-221ENST00000513643 SNUPNO95149 360 aaKnown RBP8.94□□□□□ -0.98
RNF4-221ENST00000513643 UNC5CO95185 931 aa8.94□□□□□ -0.98
RNF4-221ENST00000513643 ZWINTO95229 277 aa8.94□□□□□ -0.98
RNF4-221ENST00000513643 IGHG3P01860 377 aa8.94□□□□□ -0.98
RNF4-221ENST00000513643 SERPINE1P05121 402 aa8.94□□□□□ -0.98
RNF4-221ENST00000513643 LINC00032P0C843 101 aa8.94□□□□□ -0.98
RNF4-221ENST00000513643 PCSK2P16519 638 aa8.94□□□□□ -0.98
RNF4-221ENST00000513643 ZNF24P17028 368 aa8.94□□□□□ -0.98
RNF4-221ENST00000513643 SDC1P18827 310 aa8.94□□□□□ -0.98
RNF4-221ENST00000513643 NT5EP21589 574 aa8.94□□□□□ -0.98
RNF4-221ENST00000513643 PTGER1P34995 402 aa8.94□□□□□ -0.98
RNF4-221ENST00000513643 PPICP45877 212 aa8.94□□□□□ -0.98
RNF4-221ENST00000513643 NR0B1P51843 470 aaKnown RBP8.94□□□□□ -0.98
RNF4-221ENST00000513643 C2orf80Q0P641 193 aa8.94□□□□□ -0.98
RNF4-221ENST00000513643 GTF3C1Q12789 2109 aa8.94□□□□□ -0.98
RNF4-221ENST00000513643 IMPG1Q17R60 797 aa8.94□□□□□ -0.98
RNF4-221ENST00000513643 SPDYAQ5MJ70 313 aa8.94□□□□□ -0.98
RNF4-221ENST00000513643 GFRALQ6UXV0 394 aa8.94□□□□□ -0.98
RNF4-221ENST00000513643 RGS9BPQ6ZS82 235 aa8.94□□□□□ -0.98
RNF4-221ENST00000513643 TICAM1Q8IUC6 712 aa8.94□□□□□ -0.98
RNF4-221ENST00000513643 NUDCD3Q8IVD9 361 aa8.94□□□□□ -0.98
RNF4-221ENST00000513643 FAM98AQ8NCA5 519 aaKnown RBP8.94□□□□□ -0.98
RNF4-221ENST00000513643 ADCY4Q8NFM4 1077 aa8.94□□□□□ -0.98
RNF4-221ENST00000513643 SLC22A8Q8TCC7 542 aa8.94□□□□□ -0.98
RNF4-221ENST00000513643 SSC4DQ8WTU2 575 aa8.94□□□□□ -0.98
RNF4-221ENST00000513643 HOXB13Q92826 284 aaPredicted RBP8.94□□□□□ -0.98
RNF4-221ENST00000513643 VSTM2LQ96N03 204 aa8.94□□□□□ -0.98
RNF4-221ENST00000513643 BTBD9Q96Q07 612 aa8.94□□□□□ -0.98
RNF4-221ENST00000513643 FAM173AQ9BQD7 235 aa8.94□□□□□ -0.98
RNF4-221ENST00000513643 NXF5Q9H1B4 397 aaKnown RBP8.94□□□□□ -0.98
RNF4-221ENST00000513643 ZNF395Q9H8N7 513 aaPredicted RBP8.94□□□□□ -0.98
RNF4-221ENST00000513643 TMBIM4Q9HC24 238 aa8.94□□□□□ -0.98
RNF4-221ENST00000513643 CNIH4Q9P003 139 aa8.94□□□□□ -0.98
RNF4-221ENST00000513643 NTMQ9P121 344 aa8.94□□□□□ -0.98
RNF4-221ENST00000513643 OSGIN2Q9Y236 505 aa8.94□□□□□ -0.98
RNF4-221ENST00000513643 CFL2Q9Y281 166 aa8.94□□□□□ -0.98
RNF4-221ENST00000513643 NPFFR2Q9Y5X5 522 aa8.94□□□□□ -0.98
RNF4-221ENST00000513643 DNAJC13O75165 2243 aa8.94□□□□□ -0.98
RNF4-221ENST00000513643 LRRC3CA6NJW4 275 aa8.93□□□□□ -0.98
RNF4-221ENST00000513643 NPIPA5E9PKD4 350 aa8.93□□□□□ -0.98
RNF4-221ENST00000513643 ADAM10O14672 748 aa8.93□□□□□ -0.98
RNF4-221ENST00000513643 ACOX3O15254 700 aa8.93□□□□□ -0.98
RNF4-221ENST00000513643 LRRTM2O43300 516 aa8.93□□□□□ -0.98
RNF4-221ENST00000513643 TRIM3O75382 744 aaPredicted RBP8.93□□□□□ -0.98
RNF4-221ENST00000513643 CRCPO75575 148 aa8.93□□□□□ -0.98
RNF4-221ENST00000513643 JUNP05412 331 aaKnown RBP8.93□□□□□ -0.98
RNF4-221ENST00000513643 ABCB1P08183 1280 aaPredicted RBP8.93□□□□□ -0.98
RNF4-221ENST00000513643 CT45A8P0DMV1 189 aa8.93□□□□□ -0.98
RNF4-221ENST00000513643 CT45A9P0DMV2 189 aa8.93□□□□□ -0.98
RNF4-221ENST00000513643 BCKDHAP12694 445 aa8.93□□□□□ -0.98
RNF4-221ENST00000513643 GRK2P25098 689 aa8.93□□□□□ -0.98
RNF4-221ENST00000513643 ABCD3P28288 659 aa8.93□□□□□ -0.98
RNF4-221ENST00000513643 MPIP34949 423 aa8.93□□□□□ -0.98
RNF4-221ENST00000513643 MAP3K8P41279 467 aa8.93□□□□□ -0.98
RNF4-221ENST00000513643 CA7P43166 264 aa8.93□□□□□ -0.98
RNF4-221ENST00000513643 ALDH9A1P49189 494 aa8.93□□□□□ -0.98
RNF4-221ENST00000513643 C21orf58P58505 322 aa8.93□□□□□ -0.98
RNF4-221ENST00000513643 GPR85P60893 370 aa8.93□□□□□ -0.98
RNF4-221ENST00000513643 DCAF7P61962 342 aa8.93□□□□□ -0.98
RNF4-221ENST00000513643 MRPS35P82673 323 aaKnown RBP8.93□□□□□ -0.98
RNF4-221ENST00000513643 ELOAQ14241 798 aaKnown RBP8.93□□□□□ -0.98
RNF4-221ENST00000513643 EXOSC7Q15024 291 aaKnown RBP8.93□□□□□ -0.98
RNF4-221ENST00000513643 SMU1Q2TAY7 513 aa8.93□□□□□ -0.98
RNF4-221ENST00000513643 CT45A2Q5DJT8 189 aa8.93□□□□□ -0.98
RNF4-221ENST00000513643 EXOSC6Q5RKV6 272 aaKnown RBP8.93□□□□□ -0.98
RNF4-221ENST00000513643 C6orf136Q5SQH8 315 aa8.93□□□□□ -0.98
RNF4-221ENST00000513643 SH2D4BQ5SQS7 431 aa8.93□□□□□ -0.98
RNF4-221ENST00000513643 FNDC7Q5VTL7 733 aa8.93□□□□□ -0.98
RNF4-221ENST00000513643 SLC22A10Q63ZE4 541 aa8.93□□□□□ -0.98
RNF4-221ENST00000513643 SPPL2CQ8IUH8 684 aa8.93□□□□□ -0.98
RNF4-221ENST00000513643 RIMKLAQ8IXN7 391 aa8.93□□□□□ -0.98
RNF4-221ENST00000513643 TAGAPQ8N103 731 aa8.93□□□□□ -0.98
RNF4-221ENST00000513643 OR2L13Q8N349 312 aa8.93□□□□□ -0.98
RNF4-221ENST00000513643 FBXW8Q8N3Y1 598 aa8.93□□□□□ -0.98
RNF4-221ENST00000513643 OR7G2Q8NG99 324 aa8.93□□□□□ -0.98
RNF4-221ENST00000513643 OR10G3Q8NGC4 313 aa8.93□□□□□ -0.98
RNF4-221ENST00000513643 OR52R1Q8NGF1 315 aa8.93□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms