RNA–Protein interactions for RNA: ENST00000508604.5

NUP54-208, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 1,671 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-208ENST00000508604 GTPBP2Q9BX10 602 aaKnown RBP1.64□□□□□ -2.15
NUP54-208ENST00000508604 AP1M1Q9BXS5 423 aa1.64□□□□□ -2.15
NUP54-208ENST00000508604 NCOR1P1Q9H4R4 102 aa1.64□□□□□ -2.15
NUP54-208ENST00000508604 NT5DC2Q9H857 520 aa1.64□□□□□ -2.15
NUP54-208ENST00000508604 FANCFQ9NPI8 374 aa1.64□□□□□ -2.15
NUP54-208ENST00000508604 TUBGCP4Q9UGJ1 667 aa1.64□□□□□ -2.15
NUP54-208ENST00000508604 ARHGAP31Q2M1Z3 1444 aa1.63□□□□□ -2.15
NUP54-208ENST00000508604 PPIP5K1Q6PFW1 1433 aa1.63□□□□□ -2.15
NUP54-208ENST00000508604 NACADO15069 1562 aa1.63□□□□□ -2.15
NUP54-208ENST00000508604 HEG1Q9ULI3 1381 aa1.63□□□□□ -2.15
NUP54-208ENST00000508604 IGKV2D-24A0A075B6R9 120 aa1.63□□□□□ -2.15
NUP54-208ENST00000508604 ARPC4-TTLL3A0A0A6YYG9 625 aa1.63□□□□□ -2.15
NUP54-208ENST00000508604 ERICH2A1L162 156 aa1.63□□□□□ -2.15
NUP54-208ENST00000508604 E9PMD0 336 aa1.63□□□□□ -2.15
NUP54-208ENST00000508604 CETN3O15182 167 aa1.63□□□□□ -2.15
NUP54-208ENST00000508604 WDR46O15213 610 aaKnown RBP1.63□□□□□ -2.15
NUP54-208ENST00000508604 NVLO15381 856 aaKnown RBP1.63□□□□□ -2.15
NUP54-208ENST00000508604 ZBTB14O43829 449 aa1.63□□□□□ -2.15
NUP54-208ENST00000508604 KLHL41O60662 606 aa1.63□□□□□ -2.15
NUP54-208ENST00000508604 EPB41P11171 864 aaKnown RBP1.63□□□□□ -2.15
NUP54-208ENST00000508604 TMOD1P28289 359 aa1.63□□□□□ -2.15
NUP54-208ENST00000508604 SSTR1P30872 391 aa1.63□□□□□ -2.15
NUP54-208ENST00000508604 HSD17B2P37059 387 aa1.63□□□□□ -2.15
NUP54-208ENST00000508604 CAPZA2P47755 286 aa1.63□□□□□ -2.15
NUP54-208ENST00000508604 PPOXP50336 477 aa1.63□□□□□ -2.15
NUP54-208ENST00000508604 BACE1P56817 501 aa1.63□□□□□ -2.15
NUP54-208ENST00000508604 DSTNP60981 165 aa1.63□□□□□ -2.15
NUP54-208ENST00000508604 B2MP61769 119 aa1.63□□□□□ -2.15
NUP54-208ENST00000508604 GNB2P62879 340 aa1.63□□□□□ -2.15
NUP54-208ENST00000508604 AKAP17AQ02040 695 aaKnown RBP1.63□□□□□ -2.15
NUP54-208ENST00000508604 UBXN1Q04323 297 aa1.63□□□□□ -2.15
NUP54-208ENST00000508604 ACSM1Q08AH1 577 aa1.63□□□□□ -2.15
NUP54-208ENST00000508604 HSPA14Q0VDF9 509 aa1.63□□□□□ -2.15
NUP54-208ENST00000508604 CAMK2DQ13557 499 aa1.63□□□□□ -2.15
NUP54-208ENST00000508604 SNX1Q13596 522 aa1.63□□□□□ -2.15
NUP54-208ENST00000508604 PPP1R7Q15435 360 aa1.63□□□□□ -2.15
NUP54-208ENST00000508604 MAPRE2Q15555 327 aa1.63□□□□□ -2.15
NUP54-208ENST00000508604 KCTD19Q17RG1 926 aaPredicted RBP1.63□□□□□ -2.15
NUP54-208ENST00000508604 FAM174BQ3ZCQ3 159 aa1.63□□□□□ -2.15
NUP54-208ENST00000508604 C14orf28Q4W4Y0 310 aa1.63□□□□□ -2.15
NUP54-208ENST00000508604 SUSD4Q5VX71 490 aa1.63□□□□□ -2.15
NUP54-208ENST00000508604 NEPROQ6NW34 567 aa1.63□□□□□ -2.15
NUP54-208ENST00000508604 SLC27A4Q6P1M0 643 aa1.63□□□□□ -2.15
NUP54-208ENST00000508604 PPP1R21Q6ZMI0 780 aa1.63□□□□□ -2.15
NUP54-208ENST00000508604 GCNT7Q6ZNI0 430 aa1.63□□□□□ -2.15
NUP54-208ENST00000508604 HOOK3Q86VS8 718 aa1.63□□□□□ -2.15
NUP54-208ENST00000508604 GRAMD2AQ8IUY3 354 aa1.63□□□□□ -2.15
NUP54-208ENST00000508604 CCDC71Q8IV32 467 aaPredicted RBP1.63□□□□□ -2.15
NUP54-208ENST00000508604 LYPD1Q8N2G4 141 aa1.63□□□□□ -2.15
NUP54-208ENST00000508604 OR52K2Q8NGK3 314 aa1.63□□□□□ -2.15
NUP54-208ENST00000508604 GDAP1Q8TB36 358 aa1.63□□□□□ -2.15
NUP54-208ENST00000508604 ZNF606Q8WXB4 792 aa1.63□□□□□ -2.15
NUP54-208ENST00000508604 SNX21Q969T3 373 aa1.63□□□□□ -2.15
NUP54-208ENST00000508604 CABS1Q96KC9 395 aa1.63□□□□□ -2.15
NUP54-208ENST00000508604 C16orf45Q96MC5 204 aaPredicted RBP1.63□□□□□ -2.15
NUP54-208ENST00000508604 MTMR9Q96QG7 549 aa1.63□□□□□ -2.15
NUP54-208ENST00000508604 PSKH2Q96QS6 385 aa1.63□□□□□ -2.15
NUP54-208ENST00000508604 TBX15Q96SF7 602 aa1.63□□□□□ -2.15
NUP54-208ENST00000508604 CCT7Q99832 543 aa1.63□□□□□ -2.15
NUP54-208ENST00000508604 NAA11Q9BSU3 229 aaPredicted RBP1.63□□□□□ -2.15
NUP54-208ENST00000508604 CENPHQ9H3R5 247 aa1.63□□□□□ -2.15
NUP54-208ENST00000508604 C8orf33Q9H7E9 229 aaPredicted RBP1.63□□□□□ -2.15
NUP54-208ENST00000508604 VCPKMTQ9H867 229 aa1.63□□□□□ -2.15
NUP54-208ENST00000508604 PARVBQ9HBI1 364 aa1.63□□□□□ -2.15
NUP54-208ENST00000508604 PHPT1Q9NRX4 125 aaPredicted RBP1.63□□□□□ -2.15
NUP54-208ENST00000508604 IMPAD1Q9NX62 359 aa1.63□□□□□ -2.15
NUP54-208ENST00000508604 MIS18AQ9NYP9 233 aa1.63□□□□□ -2.15
NUP54-208ENST00000508604 MTRF1LQ9UGC7 380 aaKnown RBP1.63□□□□□ -2.15
NUP54-208ENST00000508604 TMCO1Q9UM00 188 aa1.63□□□□□ -2.15
NUP54-208ENST00000508604 DUSP12Q9UNI6 340 aa1.63□□□□□ -2.15
NUP54-208ENST00000508604 SH3GLB1Q9Y371 365 aa1.63□□□□□ -2.15
NUP54-208ENST00000508604 ATP6V1DQ9Y5K8 247 aa1.63□□□□□ -2.15
NUP54-208ENST00000508604 RRBP1Q9P2E9 1410 aaKnown RBP1.63□□□□□ -2.15
NUP54-208ENST00000508604 SH3TC1Q8TE82 1336 aa1.63□□□□□ -2.15
NUP54-208ENST00000508604 ATAD2BQ9ULI0 1458 aa1.63□□□□□ -2.15
NUP54-208ENST00000508604 MEGF6O75095 1541 aa1.62□□□□□ -2.15
NUP54-208ENST00000508604 GOLGA6L7A0A1B0GV03 622 aa1.62□□□□□ -2.15
NUP54-208ENST00000508604 EFCAB7A8K855 629 aa1.62□□□□□ -2.15
NUP54-208ENST00000508604 ANHXE9PGG2 379 aa1.62□□□□□ -2.15
NUP54-208ENST00000508604 NPIPA3F8WFD2 350 aa1.62□□□□□ -2.15
NUP54-208ENST00000508604 SLITRK3O94933 977 aa1.62□□□□□ -2.15
NUP54-208ENST00000508604 OLFM2O95897 454 aa1.62□□□□□ -2.15
NUP54-208ENST00000508604 MYBL1P10243 752 aa1.62□□□□□ -2.15
NUP54-208ENST00000508604 PSG2P11465 335 aa1.62□□□□□ -2.15
NUP54-208ENST00000508604 EZRP15311 586 aaKnown RBP1.62□□□□□ -2.15
NUP54-208ENST00000508604 TCF4P15884 667 aa1.62□□□□□ -2.15
NUP54-208ENST00000508604 IL10P22301 178 aa1.62□□□□□ -2.15
NUP54-208ENST00000508604 ZNF41P51814 821 aaPredicted RBP1.62□□□□□ -2.15
NUP54-208ENST00000508604 BNIP1Q12981 228 aa1.62□□□□□ -2.15
NUP54-208ENST00000508604 C16orf72Q14CZ0 275 aa1.62□□□□□ -2.15
NUP54-208ENST00000508604 BCL2A1Q16548 175 aa1.62□□□□□ -2.15
NUP54-208ENST00000508604 IMMTQ16891 758 aaKnown RBP1.62□□□□□ -2.15
NUP54-208ENST00000508604 SHROOM1Q2M3G4 852 aaPredicted RBP1.62□□□□□ -2.15
NUP54-208ENST00000508604 HYAL4Q2M3T9 481 aa1.62□□□□□ -2.15
NUP54-208ENST00000508604 TCP11X2Q5H9J9 407 aa1.62□□□□□ -2.15
NUP54-208ENST00000508604 CFAP157Q5JU67 520 aa1.62□□□□□ -2.15
NUP54-208ENST00000508604 METTL11BQ5VVY1 283 aa1.62□□□□□ -2.15
NUP54-208ENST00000508604 TWF2Q6IBS0 349 aaKnown RBP1.62□□□□□ -2.15
NUP54-208ENST00000508604 GALNT17Q6IS24 598 aa1.62□□□□□ -2.15
NUP54-208ENST00000508604 TRAT1Q6PIZ9 186 aa1.62□□□□□ -2.15
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms