RNA–Protein interactions for RNA: ENST00000501271.2

CLIP1-204, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2

Gene CLIP1, Length 2,426 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-204ENST00000501271 SDHCQ99643 169 aaPredicted RBP9.29□□□□□ -0.92
CLIP1-204ENST00000501271 FAIM2Q9BWQ8 316 aa9.29□□□□□ -0.92
CLIP1-204ENST00000501271 MND1Q9BWT6 205 aa9.29□□□□□ -0.92
CLIP1-204ENST00000501271 NUAK2Q9H093 628 aa9.29□□□□□ -0.92
CLIP1-204ENST00000501271 RSPH9Q9H1X1 276 aaPredicted RBP9.29□□□□□ -0.92
CLIP1-204ENST00000501271 MRPS30Q9NP92 439 aaKnown RBP9.29□□□□□ -0.92
CLIP1-204ENST00000501271 EXOSC4Q9NPD3 245 aaKnown RBP9.29□□□□□ -0.92
CLIP1-204ENST00000501271 PRDM7Q9NQW5 492 aa9.29□□□□□ -0.92
CLIP1-204ENST00000501271 ANKMY1Q9P2S6 941 aa9.29□□□□□ -0.92
CLIP1-204ENST00000501271 PAIP2BQ9ULR5 123 aaKnown RBP9.29□□□□□ -0.92
CLIP1-204ENST00000501271 RPL36Q9Y3U8 105 aaKnown RBP9.29□□□□□ -0.92
CLIP1-204ENST00000501271 PCDHGB6Q9Y5F9 930 aa9.29□□□□□ -0.92
CLIP1-204ENST00000501271 KCNE3Q9Y6H6 103 aa9.29□□□□□ -0.92
CLIP1-204ENST00000501271 TMEM221A6NGB7 291 aa9.29□□□□□ -0.92
CLIP1-204ENST00000501271 TLX2O43763 284 aaPredicted RBP9.29□□□□□ -0.92
CLIP1-204ENST00000501271 AIFM1O95831 613 aa9.29□□□□□ -0.92
CLIP1-204ENST00000501271 DLGAP3O95886 979 aa9.29□□□□□ -0.92
CLIP1-204ENST00000501271 LGI1O95970 557 aa9.29□□□□□ -0.92
CLIP1-204ENST00000501271 CEACAM5P06731 702 aa9.29□□□□□ -0.92
CLIP1-204ENST00000501271 ENDOUP21128 410 aaKnown RBP9.29□□□□□ -0.92
CLIP1-204ENST00000501271 CERS1P27544 350 aa9.29□□□□□ -0.92
CLIP1-204ENST00000501271 BUD31P41223 144 aaPredicted RBP9.29□□□□□ -0.92
CLIP1-204ENST00000501271 PCYT1AP49585 367 aa9.29□□□□□ -0.92
CLIP1-204ENST00000501271 ALDH6A1Q02252 535 aaKnown RBP9.29□□□□□ -0.92
CLIP1-204ENST00000501271 COL9A2Q14055 689 aaPredicted RBP9.29□□□□□ -0.92
CLIP1-204ENST00000501271 NCF4Q15080 339 aa9.29□□□□□ -0.92
CLIP1-204ENST00000501271 AGERQ15109 404 aa9.29□□□□□ -0.92
CLIP1-204ENST00000501271 OCLNQ16625 522 aa9.29□□□□□ -0.92
CLIP1-204ENST00000501271 TMEM35AQ53FP2 167 aa9.29□□□□□ -0.92
CLIP1-204ENST00000501271 SYT14P1Q58G82 188 aa9.29□□□□□ -0.92
CLIP1-204ENST00000501271 ACSM5Q6NUN0 579 aa9.29□□□□□ -0.92
CLIP1-204ENST00000501271 ABHD17CQ6PCB6 329 aa9.29□□□□□ -0.92
CLIP1-204ENST00000501271 TMEM64Q6YI46 380 aa9.29□□□□□ -0.92
CLIP1-204ENST00000501271 CCDC116Q8IYX3 515 aa9.29□□□□□ -0.92
CLIP1-204ENST00000501271 NANOGP1Q8N7R0 232 aa9.29□□□□□ -0.92
CLIP1-204ENST00000501271 ACOT4Q8N9L9 421 aa9.29□□□□□ -0.92
CLIP1-204ENST00000501271 TTLQ8NG68 377 aa9.29□□□□□ -0.92
CLIP1-204ENST00000501271 PHOSPHO2Q8TCD6 241 aa9.29□□□□□ -0.92
CLIP1-204ENST00000501271 JPH3Q8WXH2 748 aaPredicted RBP9.29□□□□□ -0.92
CLIP1-204ENST00000501271 ARMC5Q96C12 935 aa9.29□□□□□ -0.92
CLIP1-204ENST00000501271 PRRC1Q96M27 445 aa9.29□□□□□ -0.92
CLIP1-204ENST00000501271 ASPNQ9BXN1 380 aa9.29□□□□□ -0.92
CLIP1-204ENST00000501271 BARHL1Q9BZE3 327 aa9.29□□□□□ -0.92
CLIP1-204ENST00000501271 PLA2G12AQ9BZM1 189 aa9.29□□□□□ -0.92
CLIP1-204ENST00000501271 BTBD1Q9H0C5 482 aa9.29□□□□□ -0.92
CLIP1-204ENST00000501271 ANKRA2Q9H9E1 313 aa9.29□□□□□ -0.92
CLIP1-204ENST00000501271 BCL2L10Q9HD36 194 aa9.29□□□□□ -0.92
CLIP1-204ENST00000501271 PHPT1Q9NRX4 125 aaPredicted RBP9.29□□□□□ -0.92
CLIP1-204ENST00000501271 SPHK1Q9NYA1 384 aa9.29□□□□□ -0.92
CLIP1-204ENST00000501271 FBXW2Q9UKT8 454 aa9.29□□□□□ -0.92
CLIP1-204ENST00000501271 MKLN1Q9UL63 735 aa9.29□□□□□ -0.92
CLIP1-204ENST00000501271 SLC9A8Q9Y2E8 581 aa9.29□□□□□ -0.92
CLIP1-204ENST00000501271 SSUH2Q9Y2M2 353 aa9.29□□□□□ -0.92
CLIP1-204ENST00000501271 KLHL20Q9Y2M5 609 aa9.29□□□□□ -0.92
CLIP1-204ENST00000501271 GRXCR1A8MXD5 290 aa9.28□□□□□ -0.92
CLIP1-204ENST00000501271 PRICKLE3O43900 615 aaPredicted RBP9.28□□□□□ -0.92
CLIP1-204ENST00000501271 NTN1O95631 604 aa9.28□□□□□ -0.92
CLIP1-204ENST00000501271 PTTG1O95997 202 aa9.28□□□□□ -0.92
CLIP1-204ENST00000501271 ATP5A1P25705 553 aaKnown RBP9.28□□□□□ -0.92
CLIP1-204ENST00000501271 RPS19P39019 145 aaKnown RBP9.28□□□□□ -0.92
CLIP1-204ENST00000501271 CRYBB2P43320 205 aa9.28□□□□□ -0.92
CLIP1-204ENST00000501271 SOX9P48436 509 aa9.28□□□□□ -0.92
CLIP1-204ENST00000501271 GINS1Q14691 196 aa9.28□□□□□ -0.92
CLIP1-204ENST00000501271 CARTPTQ16568 116 aa9.28□□□□□ -0.92
CLIP1-204ENST00000501271 SPANXN2Q5MJ10 180 aa9.28□□□□□ -0.92
CLIP1-204ENST00000501271 MRM1Q6IN84 353 aaKnown RBP9.28□□□□□ -0.92
CLIP1-204ENST00000501271 CD300LDQ6UXZ3 194 aa9.28□□□□□ -0.92
CLIP1-204ENST00000501271 KIF18BQ86Y91 864 aa9.28□□□□□ -0.92
CLIP1-204ENST00000501271 OR2L3Q8NG85 312 aa9.28□□□□□ -0.92
CLIP1-204ENST00000501271 FGF11Q92914 225 aa9.28□□□□□ -0.92
CLIP1-204ENST00000501271 TIMM29Q9BSF4 260 aa9.28□□□□□ -0.92
CLIP1-204ENST00000501271 TRMT61BQ9BVS5 477 aaKnown RBP9.28□□□□□ -0.92
CLIP1-204ENST00000501271 PRR14Q9BWN1 585 aa9.28□□□□□ -0.92
CLIP1-204ENST00000501271 POLDIP3Q9BY77 421 aaKnown RBP9.28□□□□□ -0.92
CLIP1-204ENST00000501271 PLA2G2FQ9BZM2 168 aa9.28□□□□□ -0.92
CLIP1-204ENST00000501271 POLR2J2Q9GZM3 115 aaKnown RBP9.28□□□□□ -0.92
CLIP1-204ENST00000501271 NDUFB11Q9NX14 153 aa9.28□□□□□ -0.92
CLIP1-204ENST00000501271 MOSPD1Q9UJG1 213 aa9.28□□□□□ -0.92
CLIP1-204ENST00000501271 PRR19A6NJB7 356 aa9.27□□□□□ -0.92
CLIP1-204ENST00000501271 PDZK1P1A8MUH7 402 aa9.27□□□□□ -0.92
CLIP1-204ENST00000501271 FRS3O43559 492 aa9.27□□□□□ -0.92
CLIP1-204ENST00000501271 CA3P07451 260 aa9.27□□□□□ -0.92
CLIP1-204ENST00000501271 RAB8AP61006 207 aa9.27□□□□□ -0.92
CLIP1-204ENST00000501271 KHDRBS1Q07666 443 aaKnown RBP eCLIP9.27□□□□□ -0.92
CLIP1-204ENST00000501271 KRT33BQ14525 404 aa9.27□□□□□ -0.92
CLIP1-204ENST00000501271 GPAT3Q53EU6 434 aa9.27□□□□□ -0.92
CLIP1-204ENST00000501271 DESI1Q6ICB0 168 aa9.27□□□□□ -0.92
CLIP1-204ENST00000501271 FAM109BQ6ICB4 259 aaPredicted RBP9.27□□□□□ -0.92
CLIP1-204ENST00000501271 C1orf94Q6P1W5 598 aa9.27□□□□□ -0.92
CLIP1-204ENST00000501271 FAM26EQ8N5C1 309 aa9.27□□□□□ -0.92
CLIP1-204ENST00000501271 TMEM145Q8NBT3 493 aa9.27□□□□□ -0.92
CLIP1-204ENST00000501271 OR52I1Q8NGK6 324 aa9.27□□□□□ -0.92
CLIP1-204ENST00000501271 SFXN5Q8TD22 340 aa9.27□□□□□ -0.92
CLIP1-204ENST00000501271 LRR1Q96L50 414 aa9.27□□□□□ -0.92
CLIP1-204ENST00000501271 ZNF582Q96NG8 517 aaPredicted RBP9.27□□□□□ -0.92
CLIP1-204ENST00000501271 KLHL25Q9H0H3 589 aa9.27□□□□□ -0.92
CLIP1-204ENST00000501271 EGLN3Q9H6Z9 239 aa9.27□□□□□ -0.92
CLIP1-204ENST00000501271 TRPV4Q9HBA0 871 aa9.27□□□□□ -0.92
CLIP1-204ENST00000501271 SMURF1Q9HCE7 757 aa9.27□□□□□ -0.92
CLIP1-204ENST00000501271 ERVK13-1Q9NX77 482 aa9.27□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 50 ms