RNA–Protein interactions for RNA: ENST00000497849.1

VIM-208, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 634 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-208ENST00000497849 C18orf63Q68DL7 685 aa14.92□□□□□ -0.02
VIM-208ENST00000497849 ENPP6Q6UWR7 440 aa14.92□□□□□ -0.02
VIM-208ENST00000497849 ANGPTL8Q6UXH0 198 aa14.92□□□□□ -0.02
VIM-208ENST00000497849 GALNT7Q86SF2 657 aa14.92□□□□□ -0.02
VIM-208ENST00000497849 ANKMY2Q8IV38 441 aa14.92□□□□□ -0.02
VIM-208ENST00000497849 TRIM42Q8IWZ5 723 aa14.92□□□□□ -0.02
VIM-208ENST00000497849 SRFBP1Q8NEF9 429 aaKnown RBP14.92□□□□□ -0.02
VIM-208ENST00000497849 OR1J4Q8NGS1 313 aa14.92□□□□□ -0.02
VIM-208ENST00000497849 FBXO25Q8TCJ0 367 aa14.92□□□□□ -0.02
VIM-208ENST00000497849 UCN3Q969E3 161 aa14.92□□□□□ -0.02
VIM-208ENST00000497849 TP53INP1Q96A56 240 aa14.92□□□□□ -0.02
VIM-208ENST00000497849 SORBS1Q9BX66 1292 aaKnown RBP14.92□□□□□ -0.02
VIM-208ENST00000497849 OPN3Q9H1Y3 402 aaPredicted RBP14.92□□□□□ -0.02
VIM-208ENST00000497849 SNX15Q9NRS6 342 aa14.92□□□□□ -0.02
VIM-208ENST00000497849 GPRC5BQ9NZH0 403 aa14.92□□□□□ -0.02
VIM-208ENST00000497849 DTX4Q9Y2E6 619 aa14.92□□□□□ -0.02
VIM-208ENST00000497849 PRR14LQ5THK1 2151 aa14.92□□□□□ -0.02
VIM-208ENST00000497849 HAX1O00165 279 aa14.91□□□□□ -0.02
VIM-208ENST00000497849 PLOD2O00469 737 aa14.91□□□□□ -0.02
VIM-208ENST00000497849 HCRTR2O43614 444 aa14.91□□□□□ -0.02
VIM-208ENST00000497849 TMCC2O75069 709 aa14.91□□□□□ -0.02
VIM-208ENST00000497849 SH3BGRLO75368 114 aa14.91□□□□□ -0.02
VIM-208ENST00000497849 PLAUP00749 431 aa14.91□□□□□ -0.02
VIM-208ENST00000497849 POU2F1P14859 743 aa14.91□□□□□ -0.02
VIM-208ENST00000497849 PGAM1P18669 254 aa14.91□□□□□ -0.02
VIM-208ENST00000497849 SSTR4P31391 388 aa14.91□□□□□ -0.02
VIM-208ENST00000497849 ELK3P41970 407 aa14.91□□□□□ -0.02
VIM-208ENST00000497849 LHX2P50458 406 aa14.91□□□□□ -0.02
VIM-208ENST00000497849 GFRA1P56159 465 aa14.91□□□□□ -0.02
VIM-208ENST00000497849 FUT7Q11130 342 aa14.91□□□□□ -0.02
VIM-208ENST00000497849 DESI1Q6ICB0 168 aa14.91□□□□□ -0.02
VIM-208ENST00000497849 FAM45BPQ6NSW5 357 aa14.91□□□□□ -0.02
VIM-208ENST00000497849 BTLAQ7Z6A9 289 aa14.91□□□□□ -0.02
VIM-208ENST00000497849 GRAMD2AQ8IUY3 354 aa14.91□□□□□ -0.02
VIM-208ENST00000497849 PRR22Q8IZ63 422 aa14.91□□□□□ -0.02
VIM-208ENST00000497849 FAM45AQ8TCE6 357 aa14.91□□□□□ -0.02
VIM-208ENST00000497849 ZNF473Q8WTR7 871 aaKnown RBP14.91□□□□□ -0.02
VIM-208ENST00000497849 ANKRD7Q92527 254 aa14.91□□□□□ -0.02
VIM-208ENST00000497849 TANKQ92844 425 aa14.91□□□□□ -0.02
VIM-208ENST00000497849 RIT1Q92963 219 aa14.91□□□□□ -0.02
VIM-208ENST00000497849 WDR34Q96EX3 536 aa14.91□□□□□ -0.02
VIM-208ENST00000497849 PGM2Q96G03 612 aa14.91□□□□□ -0.02
VIM-208ENST00000497849 TMEM79Q9BSE2 394 aa14.91□□□□□ -0.02
VIM-208ENST00000497849 CAPS2Q9BXY5 557 aa14.91□□□□□ -0.02
VIM-208ENST00000497849 OR2B2Q9GZK3 357 aa14.91□□□□□ -0.02
VIM-208ENST00000497849 ZDHHC18Q9NUE0 388 aa14.91□□□□□ -0.02
VIM-208ENST00000497849 ELOVL5Q9NYP7 299 aa14.91□□□□□ -0.02
VIM-208ENST00000497849 MAPRE3Q9UPY8 281 aa14.91□□□□□ -0.02
VIM-208ENST00000497849 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP14.9□□□□□ -0.02
VIM-208ENST00000497849 C2orf72A6NCS6 295 aa14.9□□□□□ -0.02
VIM-208ENST00000497849 C16orf97H3BN30 126 aa14.9□□□□□ -0.02
VIM-208ENST00000497849 TAPBPO15533 448 aa14.9□□□□□ -0.02
VIM-208ENST00000497849 KLF4O43474 513 aa14.9□□□□□ -0.02
VIM-208ENST00000497849 CRHP06850 196 aa14.9□□□□□ -0.02
VIM-208ENST00000497849 THBDP07204 575 aa14.9□□□□□ -0.02
VIM-208ENST00000497849 GCKP35557 465 aa14.9□□□□□ -0.02
VIM-208ENST00000497849 PTGDSP41222 190 aa14.9□□□□□ -0.02
VIM-208ENST00000497849 TMED10P49755 219 aaKnown RBP14.9□□□□□ -0.02
VIM-208ENST00000497849 ARL4CP56559 192 aa14.9□□□□□ -0.02
VIM-208ENST00000497849 CLDN18P56856 261 aa14.9□□□□□ -0.02
VIM-208ENST00000497849 TNFRSF17Q02223 184 aa14.9□□□□□ -0.02
VIM-208ENST00000497849 PDIA2Q13087 525 aaKnown RBP14.9□□□□□ -0.02
VIM-208ENST00000497849 SLAMF1Q13291 335 aa14.9□□□□□ -0.02
VIM-208ENST00000497849 FASTKD3Q14CZ7 662 aaKnown RBP14.9□□□□□ -0.02
VIM-208ENST00000497849 SETDB1Q15047 1291 aa14.9□□□□□ -0.02
VIM-208ENST00000497849 TSNQ15631 228 aaKnown RBP14.9□□□□□ -0.02
VIM-208ENST00000497849 AP5B1Q2VPB7 878 aa14.9□□□□□ -0.02
VIM-208ENST00000497849 SCIMPQ6UWF3 145 aa14.9□□□□□ -0.02
VIM-208ENST00000497849 ZNF704Q6ZNC4 412 aaPredicted RBP14.9□□□□□ -0.02
VIM-208ENST00000497849 SH2D5Q6ZV89 423 aa14.9□□□□□ -0.02
VIM-208ENST00000497849 CCDC25Q86WR0 208 aa14.9□□□□□ -0.02
VIM-208ENST00000497849 CNEP1R1Q8N9A8 125 aa14.9□□□□□ -0.02
VIM-208ENST00000497849 ADIPOR1Q96A54 375 aa14.9□□□□□ -0.02
VIM-208ENST00000497849 PTCD3Q96EY7 689 aaKnown RBP14.9□□□□□ -0.02
VIM-208ENST00000497849 VPS39Q96JC1 886 aa14.9□□□□□ -0.02
VIM-208ENST00000497849 SAYSD1Q9NPB0 183 aa14.9□□□□□ -0.02
VIM-208ENST00000497849 SERHLQ9NQF3 203 aa14.9□□□□□ -0.02
VIM-208ENST00000497849 CHMP2BQ9UQN3 213 aa14.9□□□□□ -0.02
VIM-208ENST00000497849 SAP18O00422 153 aaKnown RBP14.89□□□□□ -0.03
VIM-208ENST00000497849 CGAP01215 116 aa14.89□□□□□ -0.03
VIM-208ENST00000497849 ABCB1P08183 1280 aaPredicted RBP14.89□□□□□ -0.03
VIM-208ENST00000497849 FAM157CP0CG43 387 aa14.89□□□□□ -0.03
VIM-208ENST00000497849 ZNF708P17019 499 aa14.89□□□□□ -0.03
VIM-208ENST00000497849 SSR2P43308 183 aa14.89□□□□□ -0.03
VIM-208ENST00000497849 KIR2DL2P43627 348 aaPredicted RBP14.89□□□□□ -0.03
VIM-208ENST00000497849 HNRNPH2P55795 449 aaKnown RBP14.89□□□□□ -0.03
VIM-208ENST00000497849 RPP38P78345 283 aaKnown RBP14.89□□□□□ -0.03
VIM-208ENST00000497849 ZNF460Q14592 562 aa14.89□□□□□ -0.03
VIM-208ENST00000497849 FBXO48Q5FWF7 155 aa14.89□□□□□ -0.03
VIM-208ENST00000497849 TEDDM1Q5T9Z0 273 aa14.89□□□□□ -0.03
VIM-208ENST00000497849 ANKRD34AQ69YU3 496 aa14.89□□□□□ -0.03
VIM-208ENST00000497849 PDIK1LQ8N165 341 aa14.89□□□□□ -0.03
VIM-208ENST00000497849 ZNF611Q8N823 705 aa14.89□□□□□ -0.03
VIM-208ENST00000497849 WDSUB1Q8N9V3 476 aa14.89□□□□□ -0.03
VIM-208ENST00000497849 OR14L1PQ8NHC6 308 aa14.89□□□□□ -0.03
VIM-208ENST00000497849 RDH11Q8TC12 318 aa14.89□□□□□ -0.03
VIM-208ENST00000497849 ESAMQ96AP7 390 aa14.89□□□□□ -0.03
VIM-208ENST00000497849 CFAP36Q96G28 342 aa14.89□□□□□ -0.03
VIM-208ENST00000497849 PELOQ9BRX2 385 aaKnown RBP14.89□□□□□ -0.03
VIM-208ENST00000497849 EFCAB11Q9BUY7 163 aa14.89□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms