RNA–Protein interactions for RNA: ENST00000485947.1

VIM-205, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 1,139 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-205ENST00000485947 HNRNPFP52597 415 aaKnown RBP15.88■□□□□ 0.13
VIM-205ENST00000485947 EFNA3P52797 238 aa15.88■□□□□ 0.13
VIM-205ENST00000485947 ACTN3Q08043 901 aaPredicted RBP15.88■□□□□ 0.13
VIM-205ENST00000485947 SLAMF1Q13291 335 aa15.88■□□□□ 0.13
VIM-205ENST00000485947 BTBD16Q32M84 506 aa15.88■□□□□ 0.13
VIM-205ENST00000485947 CPTPQ5TA50 214 aa15.88■□□□□ 0.13
VIM-205ENST00000485947 ANXA8L1Q5VT79 327 aa15.88■□□□□ 0.13
VIM-205ENST00000485947 FAM180AQ6UWF9 173 aa15.88■□□□□ 0.13
VIM-205ENST00000485947 DPP10Q8N608 796 aa15.88■□□□□ 0.13
VIM-205ENST00000485947 SUN3Q8TAQ9 357 aa15.88■□□□□ 0.13
VIM-205ENST00000485947 FAR1Q8WVX9 515 aa15.88■□□□□ 0.13
VIM-205ENST00000485947 GFM2Q969S9 779 aaKnown RBP15.88■□□□□ 0.13
VIM-205ENST00000485947 PPCDCQ96CD2 204 aa15.88■□□□□ 0.13
VIM-205ENST00000485947 OR52E6Q96RD3 313 aa15.88■□□□□ 0.13
VIM-205ENST00000485947 NPAS2Q99743 824 aa15.88■□□□□ 0.13
VIM-205ENST00000485947 BHLHE41Q9C0J9 482 aaPredicted RBP15.88■□□□□ 0.13
VIM-205ENST00000485947 LYRM4Q9HD34 91 aa15.88■□□□□ 0.13
VIM-205ENST00000485947 MS4A12Q9NXJ0 267 aa15.88■□□□□ 0.13
VIM-205ENST00000485947 ASB4Q9Y574 426 aa15.88■□□□□ 0.13
VIM-205ENST00000485947 C1orf226A1L170 272 aa15.87■□□□□ 0.13
VIM-205ENST00000485947 ASPDHA6ND91 283 aa15.87■□□□□ 0.13
VIM-205ENST00000485947 OR5H15A6NDH6 313 aa15.87■□□□□ 0.13
VIM-205ENST00000485947 ANKUB1A6NFN9 424 aa15.87■□□□□ 0.13
VIM-205ENST00000485947 GABRR3A8MPY1 467 aa15.87■□□□□ 0.13
VIM-205ENST00000485947 SEC24DO94855 1032 aaPredicted RBP15.87■□□□□ 0.13
VIM-205ENST00000485947 AGFG2O95081 481 aa15.87■□□□□ 0.13
VIM-205ENST00000485947 EDN3P14138 238 aa15.87■□□□□ 0.13
VIM-205ENST00000485947 CPOXP36551 454 aa15.87■□□□□ 0.13
VIM-205ENST00000485947 DGKQP52824 942 aa15.87■□□□□ 0.13
VIM-205ENST00000485947 OR4D2P58180 307 aa15.87■□□□□ 0.13
VIM-205ENST00000485947 MAPKAPK3Q16644 382 aa15.87■□□□□ 0.13
VIM-205ENST00000485947 MEP1AQ16819 746 aa15.87■□□□□ 0.13
VIM-205ENST00000485947 PGS1Q32NB8 556 aa15.87■□□□□ 0.13
VIM-205ENST00000485947 SFT2D3Q587I9 215 aa15.87■□□□□ 0.13
VIM-205ENST00000485947 PAPD4Q6PIY7 484 aaKnown RBP15.87■□□□□ 0.13
VIM-205ENST00000485947 LANCL3Q6ZV70 420 aa15.87■□□□□ 0.13
VIM-205ENST00000485947 RETREG3Q86VR2 466 aa15.87■□□□□ 0.13
VIM-205ENST00000485947 PGAM4Q8N0Y7 254 aa15.87■□□□□ 0.13
VIM-205ENST00000485947 ARHGAP24Q8N264 748 aa15.87■□□□□ 0.13
VIM-205ENST00000485947 SLC5A8Q8N695 610 aa15.87■□□□□ 0.13
VIM-205ENST00000485947 SIRT6Q8N6T7 355 aa15.87■□□□□ 0.13
VIM-205ENST00000485947 BCORP1Q8N888 145 aa15.87■□□□□ 0.13
VIM-205ENST00000485947 VPS37AQ8NEZ2 397 aa15.87■□□□□ 0.13
VIM-205ENST00000485947 OR7A2PQ8NGA2 310 aa15.87■□□□□ 0.13
VIM-205ENST00000485947 OR5T3Q8NGG3 340 aa15.87■□□□□ 0.13
VIM-205ENST00000485947 OR1N1Q8NGS0 311 aa15.87■□□□□ 0.13
VIM-205ENST00000485947 VPS33AQ96AX1 596 aa15.87■□□□□ 0.13
VIM-205ENST00000485947 PSMG3-AS1Q96PY0 264 aa15.87■□□□□ 0.13
VIM-205ENST00000485947 DUSP26Q9BV47 211 aa15.87■□□□□ 0.13
VIM-205ENST00000485947 EXO1Q9UQ84 846 aaKnown RBP15.87■□□□□ 0.13
VIM-205ENST00000485947 PCDHA9Q9Y5H5 950 aa15.87■□□□□ 0.13
VIM-205ENST00000485947 CSAG2Q9Y5P2 127 aa15.87■□□□□ 0.13
VIM-205ENST00000485947 SPACA6W5XKT8 324 aa15.87■□□□□ 0.13
VIM-205ENST00000485947 CROCCQ5TZA2 2017 aa15.86■□□□□ 0.13
VIM-205ENST00000485947 SCN3AQ9NY46 2000 aa15.86■□□□□ 0.13
VIM-205ENST00000485947 CFAP73A6NFT4 308 aa15.86■□□□□ 0.13
VIM-205ENST00000485947 ZNF860A6NHJ4 632 aa15.86■□□□□ 0.13
VIM-205ENST00000485947 CLDN4O14493 209 aa15.86■□□□□ 0.13
VIM-205ENST00000485947 BUD31P41223 144 aaPredicted RBP15.86■□□□□ 0.13
VIM-205ENST00000485947 HSD17B7P56937 341 aa15.86■□□□□ 0.13
VIM-205ENST00000485947 NFYCQ13952 458 aa15.86■□□□□ 0.13
VIM-205ENST00000485947 TRMT5Q32P41 509 aaKnown RBP15.86■□□□□ 0.13
VIM-205ENST00000485947 ACER2Q5QJU3 275 aa15.86■□□□□ 0.13
VIM-205ENST00000485947 NDUFAF5Q5TEU4 345 aa15.86■□□□□ 0.13
VIM-205ENST00000485947 OR4F3Q6IEY1 312 aa15.86■□□□□ 0.13
VIM-205ENST00000485947 GRHL3Q8TE85 626 aa15.86■□□□□ 0.13
VIM-205ENST00000485947 SSC4DQ8WTU2 575 aa15.86■□□□□ 0.13
VIM-205ENST00000485947 ITCHQ96J02 903 aa15.86■□□□□ 0.13
VIM-205ENST00000485947 PTCHD1Q96NR3 888 aa15.86■□□□□ 0.13
VIM-205ENST00000485947 HOPXQ9BPY8 73 aaPredicted RBP15.86■□□□□ 0.13
VIM-205ENST00000485947 MMADHCQ9H3L0 296 aaPredicted RBP15.86■□□□□ 0.13
VIM-205ENST00000485947 WDR41Q9HAD4 459 aa15.86■□□□□ 0.13
VIM-205ENST00000485947 TEX10Q9NXF1 929 aaPredicted RBP15.86■□□□□ 0.13
VIM-205ENST00000485947 TAS2R7Q9NYW3 318 aa15.86■□□□□ 0.13
VIM-205ENST00000485947 SH3BP4Q9P0V3 963 aa15.86■□□□□ 0.13
VIM-205ENST00000485947 BTNL2Q9UIR0 455 aa15.86■□□□□ 0.13
VIM-205ENST00000485947 FBXW2Q9UKT8 454 aa15.86■□□□□ 0.13
VIM-205ENST00000485947 DAPP1Q9UN19 280 aa15.86■□□□□ 0.13
VIM-205ENST00000485947 MRPS33Q9Y291 106 aaKnown RBP15.86■□□□□ 0.13
VIM-205ENST00000485947 IGKV3D-11A0A0A0MRZ8 115 aa15.85■□□□□ 0.13
VIM-205ENST00000485947 TCRBV16S1A1N1A0A5B0 115 aa15.85■□□□□ 0.13
VIM-205ENST00000485947 BLACEA4D250 179 aa15.85■□□□□ 0.13
VIM-205ENST00000485947 RNASET2O00584 256 aaKnown RBP15.85■□□□□ 0.13
VIM-205ENST00000485947 PROM1O43490 865 aa15.85■□□□□ 0.13
VIM-205ENST00000485947 KCNH1O95259 989 aa15.85■□□□□ 0.13
VIM-205ENST00000485947 WDPCPO95876 746 aa15.85■□□□□ 0.13
VIM-205ENST00000485947 B3GALT4O96024 378 aa15.85■□□□□ 0.13
VIM-205ENST00000485947 CRYABP02511 175 aaKnown RBP15.85■□□□□ 0.13
VIM-205ENST00000485947 NR2F6P10588 404 aa15.85■□□□□ 0.13
VIM-205ENST00000485947 TLX1P31314 330 aaPredicted RBP15.85■□□□□ 0.13
VIM-205ENST00000485947 LIM2P55344 173 aa15.85■□□□□ 0.13
VIM-205ENST00000485947 SLC26A5P58743 744 aa15.85■□□□□ 0.13
VIM-205ENST00000485947 SLC25A3Q00325 362 aa15.85■□□□□ 0.13
VIM-205ENST00000485947 TNFRSF17Q02223 184 aa15.85■□□□□ 0.13
VIM-205ENST00000485947 RUNX2Q13950 521 aa15.85■□□□□ 0.13
VIM-205ENST00000485947 PAGE3Q5JUK9 113 aa15.85■□□□□ 0.13
VIM-205ENST00000485947 SLC2A7Q6PXP3 512 aa15.85■□□□□ 0.13
VIM-205ENST00000485947 DHDDSQ86SQ9 333 aa15.85■□□□□ 0.13
VIM-205ENST00000485947 TICAM1Q8IUC6 712 aa15.85■□□□□ 0.13
VIM-205ENST00000485947 CA13Q8N1Q1 262 aa15.85■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms