RNA–Protein interactions for RNA: ENST00000478531.5

BRCA1-215, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 1,972 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-215ENST00000478531 PMP22Q01453 160 aa6.38□□□□□ -1.39
BRCA1-215ENST00000478531 SRSF11Q05519 484 aaKnown RBP6.38□□□□□ -1.39
BRCA1-215ENST00000478531 MGAT2Q10469 447 aa6.38□□□□□ -1.39
BRCA1-215ENST00000478531 FUT7Q11130 342 aa6.38□□□□□ -1.39
BRCA1-215ENST00000478531 ZNF155Q12901 538 aaPredicted RBP6.38□□□□□ -1.39
BRCA1-215ENST00000478531 DUSP8Q13202 625 aa6.38□□□□□ -1.39
BRCA1-215ENST00000478531 MAPKAPK3Q16644 382 aa6.38□□□□□ -1.39
BRCA1-215ENST00000478531 ZNF628Q5EBL2 1059 aa6.38□□□□□ -1.39
BRCA1-215ENST00000478531 ZNF551Q7Z340 670 aaPredicted RBP6.38□□□□□ -1.39
BRCA1-215ENST00000478531 R3HCC1LQ7Z5L2 792 aaKnown RBP6.38□□□□□ -1.39
BRCA1-215ENST00000478531 HORMAD2Q8N7B1 307 aa6.38□□□□□ -1.39
BRCA1-215ENST00000478531 OR7G1Q8NGA0 311 aa6.38□□□□□ -1.39
BRCA1-215ENST00000478531 OR5M3Q8NGP4 307 aa6.38□□□□□ -1.39
BRCA1-215ENST00000478531 OR8K3Q8NH51 312 aa6.38□□□□□ -1.39
BRCA1-215ENST00000478531 NUBPLQ8TB37 319 aa6.38□□□□□ -1.39
BRCA1-215ENST00000478531 PIWIL2Q8TC59 973 aaKnown RBP6.38□□□□□ -1.39
BRCA1-215ENST00000478531 SLC22A8Q8TCC7 542 aa6.38□□□□□ -1.39
BRCA1-215ENST00000478531 TMEM125Q96AQ2 219 aa6.38□□□□□ -1.39
BRCA1-215ENST00000478531 MARK4Q96L34 752 aa6.38□□□□□ -1.39
BRCA1-215ENST00000478531 AMDHD1Q96NU7 426 aa6.38□□□□□ -1.39
BRCA1-215ENST00000478531 GLIPR2Q9H4G4 154 aa6.38□□□□□ -1.39
BRCA1-215ENST00000478531 WDR55Q9H6Y2 383 aaPredicted RBP6.38□□□□□ -1.39
BRCA1-215ENST00000478531 ESPL1Q14674 2120 aa6.38□□□□□ -1.39
BRCA1-215ENST00000478531 SPTAN1Q13813 2472 aaKnown RBP6.38□□□□□ -1.39
BRCA1-215ENST00000478531 MYO1GB0I1T2 1018 aa6.38□□□□□ -1.39
BRCA1-215ENST00000478531 SLCO1B7G3V0H7 640 aa6.38□□□□□ -1.39
BRCA1-215ENST00000478531 G3V3Y1 287 aa6.38□□□□□ -1.39
BRCA1-215ENST00000478531 ZNF354AO60765 605 aaPredicted RBP6.38□□□□□ -1.39
BRCA1-215ENST00000478531 VPS4BO75351 444 aa6.38□□□□□ -1.39
BRCA1-215ENST00000478531 PLA2G2AP14555 144 aa6.38□□□□□ -1.39
BRCA1-215ENST00000478531 CD46P15529 392 aa6.38□□□□□ -1.39
BRCA1-215ENST00000478531 LBPP18428 481 aa6.38□□□□□ -1.39
BRCA1-215ENST00000478531 S1PR1P21453 382 aa6.38□□□□□ -1.39
BRCA1-215ENST00000478531 GPX3P22352 226 aa6.38□□□□□ -1.39
BRCA1-215ENST00000478531 HLCSP50747 726 aa6.38□□□□□ -1.39
BRCA1-215ENST00000478531 MANFP55145 182 aaKnown RBP6.38□□□□□ -1.39
BRCA1-215ENST00000478531 FOXK1P85037 733 aa6.38□□□□□ -1.39
BRCA1-215ENST00000478531 EMX2Q04743 252 aa6.38□□□□□ -1.39
BRCA1-215ENST00000478531 MAP4K2Q12851 820 aa6.38□□□□□ -1.39
BRCA1-215ENST00000478531 PDE7AQ13946 482 aa6.38□□□□□ -1.39
BRCA1-215ENST00000478531 INPP5JQ15735 1006 aaPredicted RBP6.38□□□□□ -1.39
BRCA1-215ENST00000478531 IGFBP7Q16270 282 aa6.38□□□□□ -1.39
BRCA1-215ENST00000478531 PGS1Q32NB8 556 aa6.38□□□□□ -1.39
BRCA1-215ENST00000478531 SLC9B1Q4ZJI4 515 aa6.38□□□□□ -1.39
BRCA1-215ENST00000478531 CPTPQ5TA50 214 aa6.38□□□□□ -1.39
BRCA1-215ENST00000478531 FAM180AQ6UWF9 173 aa6.38□□□□□ -1.39
BRCA1-215ENST00000478531 TMEM64Q6YI46 380 aa6.38□□□□□ -1.39
BRCA1-215ENST00000478531 MAVSQ7Z434 540 aa6.38□□□□□ -1.39
BRCA1-215ENST00000478531 GALNTL5Q7Z4T8 443 aa6.38□□□□□ -1.39
BRCA1-215ENST00000478531 MDGA2Q7Z553 956 aa6.38□□□□□ -1.39
BRCA1-215ENST00000478531 PRR22Q8IZ63 422 aa6.38□□□□□ -1.39
BRCA1-215ENST00000478531 ARMC10Q8N2F6 343 aa6.38□□□□□ -1.39
BRCA1-215ENST00000478531 ZNF615Q8N8J6 731 aa6.38□□□□□ -1.39
BRCA1-215ENST00000478531 MDS2Q8NDY4 140 aa6.38□□□□□ -1.39
BRCA1-215ENST00000478531 FAM13CQ8NE31 585 aa6.38□□□□□ -1.39
BRCA1-215ENST00000478531 OR7G2Q8NG99 324 aa6.38□□□□□ -1.39
BRCA1-215ENST00000478531 ZFP28Q8NHY6 868 aa6.38□□□□□ -1.39
BRCA1-215ENST00000478531 ZNF675Q8TD23 568 aa6.38□□□□□ -1.39
BRCA1-215ENST00000478531 SNRNP40Q96DI7 357 aaKnown RBP6.38□□□□□ -1.39
BRCA1-215ENST00000478531 ZBED6CLQ96FA7 236 aaPredicted RBP6.38□□□□□ -1.39
BRCA1-215ENST00000478531 THOC1Q96FV9 657 aaKnown RBP6.38□□□□□ -1.39
BRCA1-215ENST00000478531 C7orf26Q96N11 449 aa6.38□□□□□ -1.39
BRCA1-215ENST00000478531 ITPAQ9BY32 194 aa6.38□□□□□ -1.39
BRCA1-215ENST00000478531 EQTNQ9NQ60 294 aa6.38□□□□□ -1.39
BRCA1-215ENST00000478531 DDX18Q9NVP1 670 aaKnown RBP6.38□□□□□ -1.39
BRCA1-215ENST00000478531 ASF1BQ9NVP2 202 aa6.38□□□□□ -1.39
BRCA1-215ENST00000478531 USH1CQ9Y6N9 552 aa6.38□□□□□ -1.39
BRCA1-215ENST00000478531 ZNF407Q9C0G0 2248 aa6.38□□□□□ -1.39
BRCA1-215ENST00000478531 FREM3P0C091 2139 aa6.38□□□□□ -1.39
BRCA1-215ENST00000478531 DNAJC13O75165 2243 aa6.37□□□□□ -1.39
BRCA1-215ENST00000478531 C9JVG2 144 aa6.37□□□□□ -1.39
BRCA1-215ENST00000478531 SP1P08047 785 aa6.37□□□□□ -1.39
BRCA1-215ENST00000478531 ABCB1P08183 1280 aaPredicted RBP6.37□□□□□ -1.39
BRCA1-215ENST00000478531 ALDOCP09972 364 aaKnown RBP6.37□□□□□ -1.39
BRCA1-215ENST00000478531 LAMP1P11279 417 aa6.37□□□□□ -1.39
BRCA1-215ENST00000478531 TRHRP34981 398 aaPredicted RBP6.37□□□□□ -1.39
BRCA1-215ENST00000478531 SOX18P35713 384 aa6.37□□□□□ -1.39
BRCA1-215ENST00000478531 RPL3P39023 403 aaKnown RBP6.37□□□□□ -1.39
BRCA1-215ENST00000478531 RFC3P40938 356 aa6.37□□□□□ -1.39
BRCA1-215ENST00000478531 EMDP50402 254 aa6.37□□□□□ -1.39
BRCA1-215ENST00000478531 NRG3P56975 720 aa6.37□□□□□ -1.39
BRCA1-215ENST00000478531 GPR85P60893 370 aa6.37□□□□□ -1.39
BRCA1-215ENST00000478531 CEBPEQ15744 281 aa6.37□□□□□ -1.39
BRCA1-215ENST00000478531 MPEG1Q2M385 716 aa6.37□□□□□ -1.39
BRCA1-215ENST00000478531 SMU1Q2TAY7 513 aa6.37□□□□□ -1.39
BRCA1-215ENST00000478531 OPN5Q6U736 354 aa6.37□□□□□ -1.39
BRCA1-215ENST00000478531 LARP4Q71RC2 724 aaKnown RBP eCLIP6.37□□□□□ -1.39
BRCA1-215ENST00000478531 WDR53Q7Z5U6 358 aaPredicted RBP6.37□□□□□ -1.39
BRCA1-215ENST00000478531 TAGAPQ8N103 731 aa6.37□□□□□ -1.39
BRCA1-215ENST00000478531 TMEM178AQ8NBL3 297 aa6.37□□□□□ -1.39
BRCA1-215ENST00000478531 GRHL3Q8TE85 626 aa6.37□□□□□ -1.39
BRCA1-215ENST00000478531 CKAP2Q8WWK9 683 aa6.37□□□□□ -1.39
BRCA1-215ENST00000478531 CTHRC1Q96CG8 243 aa6.37□□□□□ -1.39
BRCA1-215ENST00000478531 MAGEB18Q96M61 343 aa6.37□□□□□ -1.39
BRCA1-215ENST00000478531 PRPF18Q99633 342 aaKnown RBP6.37□□□□□ -1.39
BRCA1-215ENST00000478531 DPY30Q9C005 99 aa6.37□□□□□ -1.39
BRCA1-215ENST00000478531 NXF5Q9H1B4 397 aaKnown RBP6.37□□□□□ -1.39
BRCA1-215ENST00000478531 MED4Q9NPJ6 270 aa6.37□□□□□ -1.39
BRCA1-215ENST00000478531 ATAD3AQ9NVI7 634 aa6.37□□□□□ -1.39
BRCA1-215ENST00000478531 ASIC5Q9NY37 505 aa6.37□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms