RNA–Protein interactions for RNA: ENST00000474059.1

CCDC88A-212, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5

Gene CCDC88A, Length 541 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-212ENST00000474059 LY6G6DO95868 133 aa2.31□□□□□ -2.04
CCDC88A-212ENST00000474059 FCER2P06734 321 aa2.31□□□□□ -2.04
CCDC88A-212ENST00000474059 APRTP07741 180 aa2.31□□□□□ -2.04
CCDC88A-212ENST00000474059 HIST1H2AGP0C0S8 130 aaPredicted RBP2.31□□□□□ -2.04
CCDC88A-212ENST00000474059 MBL2P11226 248 aaPredicted RBP2.31□□□□□ -2.04
CCDC88A-212ENST00000474059 ETS1P14921 441 aa2.31□□□□□ -2.04
CCDC88A-212ENST00000474059 PPP2R1AP30153 589 aa2.31□□□□□ -2.04
CCDC88A-212ENST00000474059 RABIFP47224 123 aa2.31□□□□□ -2.04
CCDC88A-212ENST00000474059 PRELPP51888 382 aa2.31□□□□□ -2.04
CCDC88A-212ENST00000474059 ATXN3P54252 364 aaPredicted RBP2.31□□□□□ -2.04
CCDC88A-212ENST00000474059 SRPXP78539 464 aa2.31□□□□□ -2.04
CCDC88A-212ENST00000474059 KLF5Q13887 457 aaPredicted RBP2.31□□□□□ -2.04
CCDC88A-212ENST00000474059 FASTKQ14296 549 aaKnown RBP2.31□□□□□ -2.04
CCDC88A-212ENST00000474059 GAMTQ14353 236 aa2.31□□□□□ -2.04
CCDC88A-212ENST00000474059 CARTPTQ16568 116 aa2.31□□□□□ -2.04
CCDC88A-212ENST00000474059 POM121L1PQ3SYA9 428 aa2.31□□□□□ -2.04
CCDC88A-212ENST00000474059 CCDC92Q53HC0 331 aaPredicted RBP2.31□□□□□ -2.04
CCDC88A-212ENST00000474059 AGAP7PQ5VUJ5 663 aa2.31□□□□□ -2.04
CCDC88A-212ENST00000474059 STEAP1BQ6NZ63 245 aa2.31□□□□□ -2.04
CCDC88A-212ENST00000474059 IGFL3Q6UXB1 125 aa2.31□□□□□ -2.04
CCDC88A-212ENST00000474059 ADGRD2Q7Z7M1 963 aa2.31□□□□□ -2.04
CCDC88A-212ENST00000474059 YRDCQ86U90 279 aaKnown RBP2.31□□□□□ -2.04
CCDC88A-212ENST00000474059 ZSCAN30Q86W11 494 aa2.31□□□□□ -2.04
CCDC88A-212ENST00000474059 HIST2H2ABQ8IUE6 130 aaPredicted RBP2.31□□□□□ -2.04
CCDC88A-212ENST00000474059 LINC00518Q8N0U6 118 aa2.31□□□□□ -2.04
CCDC88A-212ENST00000474059 MRPL43Q8N983 215 aaKnown RBP2.31□□□□□ -2.04
CCDC88A-212ENST00000474059 BANPQ8N9N5 519 aa2.31□□□□□ -2.04
CCDC88A-212ENST00000474059 OR1B1Q8NGR6 318 aa2.31□□□□□ -2.04
CCDC88A-212ENST00000474059 OR4F5Q8NH21 305 aa2.31□□□□□ -2.04
CCDC88A-212ENST00000474059 HIST1H2ACQ93077 130 aa2.31□□□□□ -2.04
CCDC88A-212ENST00000474059 C16orf58Q96GQ5 468 aa2.31□□□□□ -2.04
CCDC88A-212ENST00000474059 CAPNS2Q96L46 248 aa2.31□□□□□ -2.04
CCDC88A-212ENST00000474059 NSMCE2Q96MF7 247 aa2.31□□□□□ -2.04
CCDC88A-212ENST00000474059 OCR1Q9BZK8 76 aa2.31□□□□□ -2.04
CCDC88A-212ENST00000474059 SIRPDQ9H106 197 aa2.31□□□□□ -2.04
CCDC88A-212ENST00000474059 HSD3B7Q9H2F3 369 aa2.31□□□□□ -2.04
CCDC88A-212ENST00000474059 MOB1AQ9H8S9 216 aa2.31□□□□□ -2.04
CCDC88A-212ENST00000474059 HPS4Q9NQG7 708 aa2.31□□□□□ -2.04
CCDC88A-212ENST00000474059 HOMER3Q9NSC5 361 aa2.31□□□□□ -2.04
CCDC88A-212ENST00000474059 ODF2LQ9ULJ1 636 aa2.31□□□□□ -2.04
CCDC88A-212ENST00000474059 ENTPD4Q9Y227 616 aa2.31□□□□□ -2.04
CCDC88A-212ENST00000474059 KLHDC2Q9Y2U9 406 aa2.31□□□□□ -2.04
CCDC88A-212ENST00000474059 GON4LQ3T8J9 2241 aa2.3□□□□□ -2.04
CCDC88A-212ENST00000474059 PRPSAP2O60256 369 aa2.3□□□□□ -2.04
CCDC88A-212ENST00000474059 DUSP11O75319 330 aaKnown RBP2.3□□□□□ -2.04
CCDC88A-212ENST00000474059 FRAT2O75474 233 aaPredicted RBP2.3□□□□□ -2.04
CCDC88A-212ENST00000474059 MT-ATP6P00846 226 aa2.3□□□□□ -2.04
CCDC88A-212ENST00000474059 TGFAP01135 160 aa2.3□□□□□ -2.04
CCDC88A-212ENST00000474059 IGHG1P01857 330 aa2.3□□□□□ -2.04
CCDC88A-212ENST00000474059 ZCCHC18P0CG32 403 aa2.3□□□□□ -2.04
CCDC88A-212ENST00000474059 GNSP15586 552 aa2.3□□□□□ -2.04
CCDC88A-212ENST00000474059 MGMTP16455 207 aa2.3□□□□□ -2.04
CCDC88A-212ENST00000474059 MAPK3P27361 379 aaPredicted RBP2.3□□□□□ -2.04
CCDC88A-212ENST00000474059 PRDX6P30041 224 aa2.3□□□□□ -2.04
CCDC88A-212ENST00000474059 AKT2P31751 481 aa2.3□□□□□ -2.04
CCDC88A-212ENST00000474059 TRIM23P36406 574 aa2.3□□□□□ -2.04
CCDC88A-212ENST00000474059 SLC1A6P48664 564 aa2.3□□□□□ -2.04
CCDC88A-212ENST00000474059 ZNF131P52739 623 aa2.3□□□□□ -2.04
CCDC88A-212ENST00000474059 BPIFB3P59826 476 aa2.3□□□□□ -2.04
CCDC88A-212ENST00000474059 CDKL1Q00532 357 aa2.3□□□□□ -2.04
CCDC88A-212ENST00000474059 SIX1Q15475 284 aaPredicted RBP2.3□□□□□ -2.04
CCDC88A-212ENST00000474059 CLPPQ16740 277 aaPredicted RBP2.3□□□□□ -2.04
CCDC88A-212ENST00000474059 CCDC40Q4G0X9 1142 aa2.3□□□□□ -2.04
CCDC88A-212ENST00000474059 MUC21Q5SSG8 566 aa2.3□□□□□ -2.04
CCDC88A-212ENST00000474059 ATAD3CQ5T2N8 411 aa2.3□□□□□ -2.04
CCDC88A-212ENST00000474059 NUFIP2Q7Z417 695 aaKnown RBP2.3□□□□□ -2.04
CCDC88A-212ENST00000474059 GPR142Q7Z601 462 aa2.3□□□□□ -2.04
CCDC88A-212ENST00000474059 SERINC5Q86VE9 423 aa2.3□□□□□ -2.04
CCDC88A-212ENST00000474059 SLC22A16Q86VW1 577 aa2.3□□□□□ -2.04
CCDC88A-212ENST00000474059 HDDC3Q8N4P3 179 aa2.3□□□□□ -2.04
CCDC88A-212ENST00000474059 LRRC17Q8N6Y2 441 aa2.3□□□□□ -2.04
CCDC88A-212ENST00000474059 ZNF781Q8N8C0 355 aa2.3□□□□□ -2.04
CCDC88A-212ENST00000474059 C4orf32Q8N8J7 132 aa2.3□□□□□ -2.04
CCDC88A-212ENST00000474059 ICA1LQ8NDH6 482 aa2.3□□□□□ -2.04
CCDC88A-212ENST00000474059 OR1K1Q8NGR3 316 aa2.3□□□□□ -2.04
CCDC88A-212ENST00000474059 RDH11Q8TC12 318 aa2.3□□□□□ -2.04
CCDC88A-212ENST00000474059 ANKRD27Q96NW4 1050 aa2.3□□□□□ -2.04
CCDC88A-212ENST00000474059 DEFB118Q96PH6 123 aa2.3□□□□□ -2.04
CCDC88A-212ENST00000474059 ACCSQ96QU6 501 aa2.3□□□□□ -2.04
CCDC88A-212ENST00000474059 CBWD1Q9BRT8 395 aa2.3□□□□□ -2.04
CCDC88A-212ENST00000474059 FTHL17Q9BXU8 183 aa2.3□□□□□ -2.04
CCDC88A-212ENST00000474059 C1orf21Q9H246 121 aa2.3□□□□□ -2.04
CCDC88A-212ENST00000474059 DCTPP1Q9H773 170 aa2.3□□□□□ -2.04
CCDC88A-212ENST00000474059 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP2.3□□□□□ -2.04
CCDC88A-212ENST00000474059 CNOT2Q9NZN8 540 aaKnown RBP2.3□□□□□ -2.04
CCDC88A-212ENST00000474059 LHX3Q9UBR4 397 aa2.3□□□□□ -2.04
CCDC88A-212ENST00000474059 ZNF346Q9UL40 294 aaKnown RBP2.3□□□□□ -2.04
CCDC88A-212ENST00000474059 PIN4Q9Y237 131 aaKnown RBP2.3□□□□□ -2.04
CCDC88A-212ENST00000474059 SLC6A5Q9Y345 797 aa2.3□□□□□ -2.04
CCDC88A-212ENST00000474059 ZMYM6O95789 1325 aa2.3□□□□□ -2.04
CCDC88A-212ENST00000474059 UBE4BO95155 1302 aa2.29□□□□□ -2.04
CCDC88A-212ENST00000474059 FAM205AQ6ZU69 1335 aa2.29□□□□□ -2.04
CCDC88A-212ENST00000474059 BCLAF3A2AJT9 711 aaKnown RBP2.29□□□□□ -2.04
CCDC88A-212ENST00000474059 RPL37AP8A6NKH3 93 aa2.29□□□□□ -2.04
CCDC88A-212ENST00000474059 FAM220BPB1ANY3 271 aa2.29□□□□□ -2.04
CCDC88A-212ENST00000474059 ARPC1BO15143 372 aaKnown RBP2.29□□□□□ -2.04
CCDC88A-212ENST00000474059 ADAM12O43184 909 aa2.29□□□□□ -2.04
CCDC88A-212ENST00000474059 THY1P04216 161 aa2.29□□□□□ -2.04
CCDC88A-212ENST00000474059 PROS1P07225 676 aa2.29□□□□□ -2.04
CCDC88A-212ENST00000474059 CCDC159P0C7I6 412 aa2.29□□□□□ -2.04
Retrieved 100 of 20,778 RNA–protein pairs in 422.5 ms