RNA–Protein interactions for RNA: ENST00000468872.5

LSM5-209, Transcript of LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated, human

TSL 2

Gene LSM5, Length 636 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LSM5-209	ENST00000468872	PBRM1	Q86U86	1689 aa		4.15	□□□□□ -1.75
LSM5-209	ENST00000468872	TNRC18	O15417	2968 aa	Predicted RBP	4.14	□□□□□ -1.75
LSM5-209	ENST00000468872	ASB14	A6NK59	587 aa		4.14	□□□□□ -1.75
LSM5-209	ENST00000468872	TXNL1	O43396	289 aa		4.14	□□□□□ -1.75
LSM5-209	ENST00000468872	FRAT2	O75474	233 aa	Predicted RBP	4.14	□□□□□ -1.75
LSM5-209	ENST00000468872	FOSL2	P15408	326 aa		4.14	□□□□□ -1.75
LSM5-209	ENST00000468872	CYP11B1	P15538	503 aa		4.14	□□□□□ -1.75
LSM5-209	ENST00000468872	ASMT	P46597	345 aa		4.14	□□□□□ -1.75
LSM5-209	ENST00000468872	SLC1A6	P48664	564 aa		4.14	□□□□□ -1.75
LSM5-209	ENST00000468872	ATP4B	P51164	291 aa		4.14	□□□□□ -1.75
LSM5-209	ENST00000468872	MYBPC1	Q00872	1141 aa		4.14	□□□□□ -1.75
LSM5-209	ENST00000468872	FUT7	Q11130	342 aa		4.14	□□□□□ -1.75
LSM5-209	ENST00000468872	SPP2	Q13103	211 aa		4.14	□□□□□ -1.75
LSM5-209	ENST00000468872	FASTK	Q14296	549 aa	Known RBP	4.14	□□□□□ -1.75
LSM5-209	ENST00000468872	SIX1	Q15475	284 aa	Predicted RBP	4.14	□□□□□ -1.75
LSM5-209	ENST00000468872	ZKSCAN8	Q15776	578 aa	Predicted RBP	4.14	□□□□□ -1.75
LSM5-209	ENST00000468872	HKDC1	Q2TB90	917 aa		4.14	□□□□□ -1.75
LSM5-209	ENST00000468872	UNC50	Q53HI1	259 aa		4.14	□□□□□ -1.75
LSM5-209	ENST00000468872	MUC21	Q5SSG8	566 aa		4.14	□□□□□ -1.75
LSM5-209	ENST00000468872	LDLRAP1	Q5SW96	308 aa		4.14	□□□□□ -1.75
LSM5-209	ENST00000468872	C12orf60	Q5U649	245 aa		4.14	□□□□□ -1.75
LSM5-209	ENST00000468872	IL23R	Q5VWK5	629 aa		4.14	□□□□□ -1.75
LSM5-209	ENST00000468872	RHBDD2	Q6NTF9	364 aa		4.14	□□□□□ -1.75
LSM5-209	ENST00000468872	DOK6	Q6PKX4	331 aa		4.14	□□□□□ -1.75
LSM5-209	ENST00000468872	OLFM4	Q6UX06	510 aa		4.14	□□□□□ -1.75
LSM5-209	ENST00000468872	NUFIP2	Q7Z417	695 aa	Known RBP	4.14	□□□□□ -1.75
LSM5-209	ENST00000468872	LMNTD2	Q8IXW0	634 aa		4.14	□□□□□ -1.75
LSM5-209	ENST00000468872	ANKRD20A12P	Q8NF67	263 aa		4.14	□□□□□ -1.75
LSM5-209	ENST00000468872	OR1B1	Q8NGR6	318 aa		4.14	□□□□□ -1.75
LSM5-209	ENST00000468872	FBXO25	Q8TCJ0	367 aa		4.14	□□□□□ -1.75
LSM5-209	ENST00000468872	U2AF1L4	Q8WU68	220 aa	Known RBP	4.14	□□□□□ -1.75
LSM5-209	ENST00000468872	CCDC28B	Q9BUN5	200 aa		4.14	□□□□□ -1.75
LSM5-209	ENST00000468872	LRRC61	Q9BV99	259 aa		4.14	□□□□□ -1.75
LSM5-209	ENST00000468872	STRADB	Q9C0K7	418 aa		4.14	□□□□□ -1.75
LSM5-209	ENST00000468872	RAB17	Q9H0T7	212 aa		4.14	□□□□□ -1.75
LSM5-209	ENST00000468872	DCTPP1	Q9H773	170 aa		4.14	□□□□□ -1.75
LSM5-209	ENST00000468872	ZNF346	Q9UL40	294 aa	Known RBP	4.14	□□□□□ -1.75
LSM5-209	ENST00000468872	FAM205A	Q6ZU69	1335 aa		4.14	□□□□□ -1.75
LSM5-209	ENST00000468872	SALL1	Q9NSC2	1324 aa		4.14	□□□□□ -1.75
LSM5-209	ENST00000468872	TRAPPC8	Q9Y2L5	1435 aa		4.13	□□□□□ -1.75
LSM5-209	ENST00000468872	COL2A1	P02458	1487 aa	Predicted RBP	4.13	□□□□□ -1.75
LSM5-209	ENST00000468872	WDR7	Q9Y4E6	1490 aa		4.13	□□□□□ -1.75
LSM5-209	ENST00000468872	IGHV3OR16-10	A0A075B7F0	116 aa		4.13	□□□□□ -1.75
LSM5-209	ENST00000468872	RGSL1	A5PLK6	1076 aa		4.13	□□□□□ -1.75
LSM5-209	ENST00000468872		A8MXK9	166 aa		4.13	□□□□□ -1.75
LSM5-209	ENST00000468872	HPR	P00739	348 aa		4.13	□□□□□ -1.75
LSM5-209	ENST00000468872	CCDC159	P0C7I6	412 aa		4.13	□□□□□ -1.75
LSM5-209	ENST00000468872	OR9G9	P0C7N8	305 aa		4.13	□□□□□ -1.75
LSM5-209	ENST00000468872	ARF4	P18085	180 aa	Predicted RBP	4.13	□□□□□ -1.75
LSM5-209	ENST00000468872	DNAJB1	P25685	340 aa		4.13	□□□□□ -1.75
LSM5-209	ENST00000468872	TMOD1	P28289	359 aa		4.13	□□□□□ -1.75
LSM5-209	ENST00000468872	PRDX2	P32119	198 aa		4.13	□□□□□ -1.75
LSM5-209	ENST00000468872	NUMB	P49757	651 aa		4.13	□□□□□ -1.75
LSM5-209	ENST00000468872	GPC3	P51654	580 aa		4.13	□□□□□ -1.75
LSM5-209	ENST00000468872	HTD2	P86397	168 aa		4.13	□□□□□ -1.75
LSM5-209	ENST00000468872	GABPB1	Q06547	395 aa	Predicted RBP	4.13	□□□□□ -1.75
LSM5-209	ENST00000468872	PDIA5	Q14554	519 aa		4.13	□□□□□ -1.75
LSM5-209	ENST00000468872	HAGH	Q16775	308 aa		4.13	□□□□□ -1.75
LSM5-209	ENST00000468872	ZSWIM7	Q19AV6	140 aa		4.13	□□□□□ -1.75
LSM5-209	ENST00000468872	POM121L1P	Q3SYA9	428 aa		4.13	□□□□□ -1.75
LSM5-209	ENST00000468872	TCHHL1	Q5QJ38	904 aa	Predicted RBP	4.13	□□□□□ -1.75
LSM5-209	ENST00000468872	RAET1G	Q6H3X3	334 aa		4.13	□□□□□ -1.75
LSM5-209	ENST00000468872	IRGC	Q6NXR0	463 aa		4.13	□□□□□ -1.75
LSM5-209	ENST00000468872	CWC27	Q6UX04	472 aa	Known RBP	4.13	□□□□□ -1.75
LSM5-209	ENST00000468872	UNC5D	Q6UXZ4	953 aa		4.13	□□□□□ -1.75
LSM5-209	ENST00000468872	SYVN1	Q86TM6	617 aa		4.13	□□□□□ -1.75
LSM5-209	ENST00000468872	RPAIN	Q86UA6	219 aa		4.13	□□□□□ -1.75
LSM5-209	ENST00000468872	CCDC71	Q8IV32	467 aa	Predicted RBP	4.13	□□□□□ -1.75
LSM5-209	ENST00000468872	SPEM1	Q8N4L4	309 aa		4.13	□□□□□ -1.75
LSM5-209	ENST00000468872	ZNF781	Q8N8C0	355 aa		4.13	□□□□□ -1.75
LSM5-209	ENST00000468872	MAPK1IP1L	Q8NDC0	245 aa		4.13	□□□□□ -1.75
LSM5-209	ENST00000468872	FAM71C	Q8NEG0	241 aa		4.13	□□□□□ -1.75
LSM5-209	ENST00000468872	ZNF397	Q8NF99	534 aa	Predicted RBP	4.13	□□□□□ -1.75
LSM5-209	ENST00000468872	TBC1D31	Q96DN5	1066 aa		4.13	□□□□□ -1.75
LSM5-209	ENST00000468872	OCR1	Q9BZK8	76 aa		4.13	□□□□□ -1.75
LSM5-209	ENST00000468872	NMNAT2	Q9BZQ4	307 aa		4.13	□□□□□ -1.75
LSM5-209	ENST00000468872	FAM124B	Q9H5Z6	455 aa	Predicted RBP	4.13	□□□□□ -1.75
LSM5-209	ENST00000468872		Q9HAA7	133 aa		4.13	□□□□□ -1.75
LSM5-209	ENST00000468872	STARD5	Q9NSY2	213 aa		4.13	□□□□□ -1.75
LSM5-209	ENST00000468872	HPF1	Q9NWY4	346 aa		4.13	□□□□□ -1.75
LSM5-209	ENST00000468872	TAS2R3	Q9NYW6	316 aa		4.13	□□□□□ -1.75
LSM5-209	ENST00000468872	CTSZ	Q9UBR2	303 aa		4.13	□□□□□ -1.75
LSM5-209	ENST00000468872	TUBGCP4	Q9UGJ1	667 aa		4.13	□□□□□ -1.75
LSM5-209	ENST00000468872	MUTYH	Q9UIF7	546 aa		4.13	□□□□□ -1.75
LSM5-209	ENST00000468872	PTPRG	P23470	1445 aa		4.12	□□□□□ -1.75
LSM5-209	ENST00000468872	PLA2R1	Q13018	1463 aa		4.12	□□□□□ -1.75
LSM5-209	ENST00000468872	ZCCHC6	Q5VYS8	1495 aa	Known RBP	4.12	□□□□□ -1.75
LSM5-209	ENST00000468872	RAPGEF2	Q9Y4G8	1499 aa		4.12	□□□□□ -1.75
LSM5-209	ENST00000468872	PDHX	O00330	501 aa		4.12	□□□□□ -1.75
LSM5-209	ENST00000468872	SORBS2	O94875	1100 aa	Known RBP	4.12	□□□□□ -1.75
LSM5-209	ENST00000468872	TRIM16	O95361	564 aa		4.12	□□□□□ -1.75
LSM5-209	ENST00000468872	POP4	O95707	220 aa	Known RBP	4.12	□□□□□ -1.75
LSM5-209	ENST00000468872	RALA	P11233	206 aa		4.12	□□□□□ -1.75
LSM5-209	ENST00000468872	OXTR	P30559	389 aa		4.12	□□□□□ -1.75
LSM5-209	ENST00000468872	CAPG	P40121	348 aa		4.12	□□□□□ -1.75
LSM5-209	ENST00000468872	ETV5	P41161	510 aa		4.12	□□□□□ -1.75
LSM5-209	ENST00000468872	MAGEA4	P43358	317 aa		4.12	□□□□□ -1.75
LSM5-209	ENST00000468872	CD300C	Q08708	224 aa		4.12	□□□□□ -1.75
LSM5-209	ENST00000468872	ELAVL2	Q12926	359 aa	Known RBP	4.12	□□□□□ -1.75
LSM5-209	ENST00000468872	NME3	Q13232	169 aa		4.12	□□□□□ -1.75

Retrieved 100 of 20,778 RNA–protein pairs in 46.4 ms