RNA–Protein interactions for RNA: ENST00000448971.5

USP39-206, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 610 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-206ENST00000448971 FGF4P08620 206 aa13.47□□□□□ -0.25
USP39-206ENST00000448971 DHRS4L1P0CG22 281 aa13.47□□□□□ -0.25
USP39-206ENST00000448971 NTSP30990 170 aa13.47□□□□□ -0.25
USP39-206ENST00000448971 TDGF1P3P51864 188 aa13.47□□□□□ -0.25
USP39-206ENST00000448971 ABCE1P61221 599 aaKnown RBP13.47□□□□□ -0.25
USP39-206ENST00000448971 DUSP2Q05923 314 aa13.47□□□□□ -0.25
USP39-206ENST00000448971 ART3Q13508 389 aa13.47□□□□□ -0.25
USP39-206ENST00000448971 LTB4RQ15722 352 aa13.47□□□□□ -0.25
USP39-206ENST00000448971 OPN5Q6U736 354 aa13.47□□□□□ -0.25
USP39-206ENST00000448971 IL20RBQ6UXL0 311 aa13.47□□□□□ -0.25
USP39-206ENST00000448971 Q6ZSR9 355 aa13.47□□□□□ -0.25
USP39-206ENST00000448971 IKBIPQ70UQ0 350 aa13.47□□□□□ -0.25
USP39-206ENST00000448971 FAM9CQ8IZT9 166 aa13.47□□□□□ -0.25
USP39-206ENST00000448971 ADCY4Q8NFM4 1077 aa13.47□□□□□ -0.25
USP39-206ENST00000448971 NR4A3Q92570 626 aa13.47□□□□□ -0.25
USP39-206ENST00000448971 METTL2AQ96IZ6 378 aaKnown RBP13.47□□□□□ -0.25
USP39-206ENST00000448971 PPP3R2Q96LZ3 170 aa13.47□□□□□ -0.25
USP39-206ENST00000448971 CCT7Q99832 543 aa13.47□□□□□ -0.25
USP39-206ENST00000448971 OR10A5Q9H207 317 aa13.47□□□□□ -0.25
USP39-206ENST00000448971 TRIM45Q9H8W5 580 aaPredicted RBP13.47□□□□□ -0.25
USP39-206ENST00000448971 MAT2BQ9NZL9 334 aa13.47□□□□□ -0.25
USP39-206ENST00000448971 EHD3Q9NZN3 535 aa13.47□□□□□ -0.25
USP39-206ENST00000448971 BCAP29Q9UHQ4 241 aa13.47□□□□□ -0.25
USP39-206ENST00000448971 ZDHHC2Q9UIJ5 367 aa13.47□□□□□ -0.25
USP39-206ENST00000448971 C2orf92A0A1B0GVN3 265 aa13.46□□□□□ -0.25
USP39-206ENST00000448971 NPIPB8E9PQR5 432 aa13.46□□□□□ -0.25
USP39-206ENST00000448971 ITM2AO43736 263 aa13.46□□□□□ -0.25
USP39-206ENST00000448971 CLPSP04118 112 aa13.46□□□□□ -0.25
USP39-206ENST00000448971 SDC1P18827 310 aa13.46□□□□□ -0.25
USP39-206ENST00000448971 GRK2P25098 689 aa13.46□□□□□ -0.25
USP39-206ENST00000448971 MAPK1P28482 360 aa13.46□□□□□ -0.25
USP39-206ENST00000448971 RIPPLY3P57055 190 aa13.46□□□□□ -0.25
USP39-206ENST00000448971 GPR85P60893 370 aa13.46□□□□□ -0.25
USP39-206ENST00000448971 MRPS35P82673 323 aaKnown RBP13.46□□□□□ -0.25
USP39-206ENST00000448971 SRSF11Q05519 484 aaKnown RBP13.46□□□□□ -0.25
USP39-206ENST00000448971 FUT7Q11130 342 aa13.46□□□□□ -0.25
USP39-206ENST00000448971 MPP2Q14168 576 aa13.46□□□□□ -0.25
USP39-206ENST00000448971 PDCD2Q16342 344 aaPredicted RBP13.46□□□□□ -0.25
USP39-206ENST00000448971 MPEG1Q2M385 716 aa13.46□□□□□ -0.25
USP39-206ENST00000448971 PRICKLE4Q2TBC4 344 aa13.46□□□□□ -0.25
USP39-206ENST00000448971 ATP6AP1LQ52LC2 224 aa13.46□□□□□ -0.25
USP39-206ENST00000448971 XKR7Q5GH72 579 aa13.46□□□□□ -0.25
USP39-206ENST00000448971 FAM71E1Q6IPT2 247 aa13.46□□□□□ -0.25
USP39-206ENST00000448971 FAM111BQ6SJ93 734 aa13.46□□□□□ -0.25
USP39-206ENST00000448971 CCDC116Q8IYX3 515 aa13.46□□□□□ -0.25
USP39-206ENST00000448971 GOLGA6L1Q8N7Z2 621 aa13.46□□□□□ -0.25
USP39-206ENST00000448971 ZNF781Q8N8C0 355 aa13.46□□□□□ -0.25
USP39-206ENST00000448971 PSD4Q8NDX1 1056 aa13.46□□□□□ -0.25
USP39-206ENST00000448971 OR7G1Q8NGA0 311 aa13.46□□□□□ -0.25
USP39-206ENST00000448971 OR9A2Q8NGT5 310 aa13.46□□□□□ -0.25
USP39-206ENST00000448971 OR6Y1Q8NGX8 325 aa13.46□□□□□ -0.25
USP39-206ENST00000448971 CLHC1Q8NHS4 586 aa13.46□□□□□ -0.25
USP39-206ENST00000448971 ITLN2Q8WWU7 325 aaPredicted RBP13.46□□□□□ -0.25
USP39-206ENST00000448971 GFM2Q969S9 779 aaKnown RBP13.46□□□□□ -0.25
USP39-206ENST00000448971 FRMD6Q96NE9 622 aa13.46□□□□□ -0.25
USP39-206ENST00000448971 TSSK3Q96PN8 268 aa13.46□□□□□ -0.25
USP39-206ENST00000448971 BBS4Q96RK4 519 aa13.46□□□□□ -0.25
USP39-206ENST00000448971 SLC35C2Q9NQQ7 365 aa13.46□□□□□ -0.25
USP39-206ENST00000448971 GIMAP2Q9UG22 337 aa13.46□□□□□ -0.25
USP39-206ENST00000448971 CFL2Q9Y281 166 aa13.46□□□□□ -0.25
USP39-206ENST00000448971 TMED5Q9Y3A6 229 aa13.46□□□□□ -0.25
USP39-206ENST00000448971 KLF2Q9Y5W3 355 aaPredicted RBP13.46□□□□□ -0.25
USP39-206ENST00000448971 ATP6AP2A0A1C7CYW4 349 aa13.45□□□□□ -0.26
USP39-206ENST00000448971 PEX11AO75192 247 aa13.45□□□□□ -0.26
USP39-206ENST00000448971 ATP6AP2O75787 350 aa13.45□□□□□ -0.26
USP39-206ENST00000448971 ZNF24P17028 368 aa13.45□□□□□ -0.26
USP39-206ENST00000448971 TACR1P25103 407 aa13.45□□□□□ -0.26
USP39-206ENST00000448971 SLC1A6P48664 564 aa13.45□□□□□ -0.26
USP39-206ENST00000448971 MEOX1P50221 254 aa13.45□□□□□ -0.26
USP39-206ENST00000448971 NR0B1P51843 470 aaKnown RBP13.45□□□□□ -0.26
USP39-206ENST00000448971 NCBP2P52298 156 aaKnown RBP eCLIP13.45□□□□□ -0.263e-6■■□□□ 12.2
USP39-206ENST00000448971 KCNK10P57789 538 aa13.45□□□□□ -0.26
USP39-206ENST00000448971 ALDH6A1Q02252 535 aaKnown RBP13.45□□□□□ -0.26
USP39-206ENST00000448971 STX3Q13277 289 aa13.45□□□□□ -0.26
USP39-206ENST00000448971 EXOSC7Q15024 291 aaKnown RBP13.45□□□□□ -0.26
USP39-206ENST00000448971 KIAA0040Q15053 153 aa13.45□□□□□ -0.26
USP39-206ENST00000448971 NNATQ16517 81 aa13.45□□□□□ -0.26
USP39-206ENST00000448971 UGT3A2Q3SY77 523 aa13.45□□□□□ -0.26
USP39-206ENST00000448971 RFTN2Q52LD8 501 aaPredicted RBP13.45□□□□□ -0.26
USP39-206ENST00000448971 CES4AQ5XG92 561 aa13.45□□□□□ -0.26
USP39-206ENST00000448971 RTL4Q6ZR62 310 aa13.45□□□□□ -0.26
USP39-206ENST00000448971 MDGA2Q7Z553 956 aa13.45□□□□□ -0.26
USP39-206ENST00000448971 PNPLA5Q7Z6Z6 429 aaPredicted RBP13.45□□□□□ -0.26
USP39-206ENST00000448971 ZNF227Q86WZ6 799 aa13.45□□□□□ -0.26
USP39-206ENST00000448971 KIRREL3Q8IZU9 778 aa13.45□□□□□ -0.26
USP39-206ENST00000448971 TAGAPQ8N103 731 aa13.45□□□□□ -0.26
USP39-206ENST00000448971 CPSF7Q8N684 471 aaKnown RBP13.45□□□□□ -0.26
USP39-206ENST00000448971 FNDC5Q8NAU1 212 aa13.45□□□□□ -0.26
USP39-206ENST00000448971 OR52R1Q8NGF1 315 aa13.45□□□□□ -0.26
USP39-206ENST00000448971 DNAJB8Q8NHS0 232 aa13.45□□□□□ -0.26
USP39-206ENST00000448971 TLCD1Q96CP7 247 aa13.45□□□□□ -0.26
USP39-206ENST00000448971 TUBGCP3Q96CW5 907 aa13.45□□□□□ -0.26
USP39-206ENST00000448971 ZNF681Q96N22 645 aa13.45□□□□□ -0.26
USP39-206ENST00000448971 C1orf50Q9BV19 199 aa13.45□□□□□ -0.26
USP39-206ENST00000448971 ITPAQ9BY32 194 aa13.45□□□□□ -0.26
USP39-206ENST00000448971 RUBCNLQ9H714 662 aa13.45□□□□□ -0.26
USP39-206ENST00000448971 WBP11Q9Y2W2 641 aaKnown RBP13.45□□□□□ -0.26
USP39-206ENST00000448971 RAP2CQ9Y3L5 183 aa13.45□□□□□ -0.26
USP39-206ENST00000448971 ITPR3Q14573 2671 aa13.44□□□□□ -0.26
USP39-206ENST00000448971 ASPDHA6ND91 283 aa13.44□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 59.5 ms