RNA–Protein interactions for RNA: ENST00000448428.1

PRPF40A-203, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 5

Gene PRPF40A, Length 490 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-203ENST00000448428 GLSO94925 669 aaPredicted RBP11.73□□□□□ -0.53
PRPF40A-203ENST00000448428 BPGMP07738 259 aa11.73□□□□□ -0.53
PRPF40A-203ENST00000448428 FREM3P0C091 2139 aa11.73□□□□□ -0.53
PRPF40A-203ENST00000448428 LINC00032P0C843 101 aa11.73□□□□□ -0.53
PRPF40A-203ENST00000448428 ABOP16442 354 aa11.73□□□□□ -0.53
PRPF40A-203ENST00000448428 DDCP20711 480 aa11.73□□□□□ -0.53
PRPF40A-203ENST00000448428 GPX3P22352 226 aa11.73□□□□□ -0.53
PRPF40A-203ENST00000448428 ARRB2P32121 409 aa11.73□□□□□ -0.53
PRPF40A-203ENST00000448428 ETV4P43268 484 aa11.73□□□□□ -0.53
PRPF40A-203ENST00000448428 CASP6P55212 293 aa11.73□□□□□ -0.53
PRPF40A-203ENST00000448428 MRPS35P82673 323 aaKnown RBP11.73□□□□□ -0.53
PRPF40A-203ENST00000448428 PTPN13Q12923 2485 aa11.73□□□□□ -0.53
PRPF40A-203ENST00000448428 CEBPEQ15744 281 aa11.73□□□□□ -0.53
PRPF40A-203ENST00000448428 NTRK2Q16620 822 aa11.73□□□□□ -0.53
PRPF40A-203ENST00000448428 ZNF628Q5EBL2 1059 aa11.73□□□□□ -0.53
PRPF40A-203ENST00000448428 CEP85LQ5SZL2 805 aa11.73□□□□□ -0.53
PRPF40A-203ENST00000448428 RGS9BPQ6ZS82 235 aa11.73□□□□□ -0.53
PRPF40A-203ENST00000448428 GK5Q6ZS86 529 aa11.73□□□□□ -0.53
PRPF40A-203ENST00000448428 RNF165Q6ZSG1 346 aa11.73□□□□□ -0.53
PRPF40A-203ENST00000448428 EXOC3L1Q86VI1 746 aa11.73□□□□□ -0.53
PRPF40A-203ENST00000448428 SAMD14Q8IZD0 417 aaPredicted RBP11.73□□□□□ -0.53
PRPF40A-203ENST00000448428 CLYBLQ8N0X4 340 aa11.73□□□□□ -0.53
PRPF40A-203ENST00000448428 C17orf47Q8NEP4 570 aa11.73□□□□□ -0.53
PRPF40A-203ENST00000448428 OR9A2Q8NGT5 310 aa11.73□□□□□ -0.53
PRPF40A-203ENST00000448428 OR6Y1Q8NGX8 325 aa11.73□□□□□ -0.53
PRPF40A-203ENST00000448428 CDC26Q8NHZ8 85 aa11.73□□□□□ -0.53
PRPF40A-203ENST00000448428 ZNF675Q8TD23 568 aa11.73□□□□□ -0.53
PRPF40A-203ENST00000448428 KAT2AQ92830 837 aa11.73□□□□□ -0.53
PRPF40A-203ENST00000448428 METTL2AQ96IZ6 378 aaKnown RBP11.73□□□□□ -0.53
PRPF40A-203ENST00000448428 EGLN2Q96KS0 407 aa11.73□□□□□ -0.53
PRPF40A-203ENST00000448428 ZIM3Q96PE6 472 aa11.73□□□□□ -0.53
PRPF40A-203ENST00000448428 ZNF407Q9C0G0 2248 aa11.73□□□□□ -0.53
PRPF40A-203ENST00000448428 NXF5Q9H1B4 397 aaKnown RBP11.73□□□□□ -0.53
PRPF40A-203ENST00000448428 ANKRA2Q9H9E1 313 aa11.73□□□□□ -0.53
PRPF40A-203ENST00000448428 IL1RL2Q9HB29 575 aa11.73□□□□□ -0.53
PRPF40A-203ENST00000448428 LRTM1Q9HBL6 345 aa11.73□□□□□ -0.53
PRPF40A-203ENST00000448428 EML4Q9HC35 981 aaKnown RBP11.73□□□□□ -0.53
PRPF40A-203ENST00000448428 MYNNQ9NPC7 610 aa11.73□□□□□ -0.53
PRPF40A-203ENST00000448428 PLSCR2Q9NRY7 297 aa11.73□□□□□ -0.53
PRPF40A-203ENST00000448428 C1orf109Q9NX04 203 aa11.73□□□□□ -0.53
PRPF40A-203ENST00000448428 TAS2R7Q9NYW3 318 aa11.73□□□□□ -0.53
PRPF40A-203ENST00000448428 EHD3Q9NZN3 535 aa11.73□□□□□ -0.53
PRPF40A-203ENST00000448428 CNIH4Q9P003 139 aa11.73□□□□□ -0.53
PRPF40A-203ENST00000448428 CNOT11Q9UKZ1 510 aaKnown RBP11.73□□□□□ -0.53
PRPF40A-203ENST00000448428 WBP11Q9Y2W2 641 aaKnown RBP11.73□□□□□ -0.53
PRPF40A-203ENST00000448428 CAPN14A8MX76 684 aa11.72□□□□□ -0.53
PRPF40A-203ENST00000448428 MYO1GB0I1T2 1018 aa11.72□□□□□ -0.53
PRPF40A-203ENST00000448428 CTIFO43310 598 aaKnown RBP11.72□□□□□ -0.53
PRPF40A-203ENST00000448428 CDC40O60508 579 aaKnown RBP eCLIP11.72□□□□□ -0.53
PRPF40A-203ENST00000448428 NME6O75414 186 aaPredicted RBP11.72□□□□□ -0.53
PRPF40A-203ENST00000448428 LRATO95237 230 aa11.72□□□□□ -0.53
PRPF40A-203ENST00000448428 CHEK2O96017 543 aa11.72□□□□□ -0.53
PRPF40A-203ENST00000448428 TACR1P25103 407 aa11.72□□□□□ -0.53
PRPF40A-203ENST00000448428 MPIP34949 423 aa11.72□□□□□ -0.53
PRPF40A-203ENST00000448428 EMDP50402 254 aa11.72□□□□□ -0.53
PRPF40A-203ENST00000448428 FBXW4P57775 412 aa11.72□□□□□ -0.53
PRPF40A-203ENST00000448428 HYAL4Q2M3T9 481 aa11.72□□□□□ -0.53
PRPF40A-203ENST00000448428 TNFAIP8L3Q5GJ75 292 aa11.72□□□□□ -0.53
PRPF40A-203ENST00000448428 PRAMEF20Q5VT98 475 aa11.72□□□□□ -0.53
PRPF40A-203ENST00000448428 MAMDC2Q7Z304 686 aaPredicted RBP11.72□□□□□ -0.53
PRPF40A-203ENST00000448428 SLC22A16Q86VW1 577 aa11.72□□□□□ -0.53
PRPF40A-203ENST00000448428 DOLPP1Q86YN1 238 aa11.72□□□□□ -0.53
PRPF40A-203ENST00000448428 TICAM1Q8IUC6 712 aa11.72□□□□□ -0.53
PRPF40A-203ENST00000448428 PRR22Q8IZ63 422 aa11.72□□□□□ -0.53
PRPF40A-203ENST00000448428 FBXW8Q8N3Y1 598 aa11.72□□□□□ -0.53
PRPF40A-203ENST00000448428 TMEM251Q8N6I4 163 aa11.72□□□□□ -0.53
PRPF40A-203ENST00000448428 OR52R1Q8NGF1 315 aa11.72□□□□□ -0.53
PRPF40A-203ENST00000448428 CCDC120Q96HB5 630 aa11.72□□□□□ -0.53
PRPF40A-203ENST00000448428 PHF12Q96QT6 1004 aa11.72□□□□□ -0.53
PRPF40A-203ENST00000448428 BBS4Q96RK4 519 aa11.72□□□□□ -0.53
PRPF40A-203ENST00000448428 CENPHQ9H3R5 247 aa11.72□□□□□ -0.53
PRPF40A-203ENST00000448428 ZDHHC11Q9H8X9 412 aa11.72□□□□□ -0.53
PRPF40A-203ENST00000448428 GIMAP4Q9NUV9 329 aa11.72□□□□□ -0.53
PRPF40A-203ENST00000448428 ENTPD4Q9Y227 616 aa11.72□□□□□ -0.53
PRPF40A-203ENST00000448428 CFL2Q9Y281 166 aa11.72□□□□□ -0.53
PRPF40A-203ENST00000448428 SEC23IPQ9Y6Y8 1000 aaKnown RBP11.72□□□□□ -0.53
PRPF40A-203ENST00000448428 DNAJC13O75165 2243 aa11.72□□□□□ -0.53
PRPF40A-203ENST00000448428 HECTD1Q9ULT8 2610 aa11.72□□□□□ -0.53
PRPF40A-203ENST00000448428 LRRK2Q5S007 2527 aa11.71□□□□□ -0.53
PRPF40A-203ENST00000448428 SETXQ7Z333 2677 aaKnown RBP11.71□□□□□ -0.53
PRPF40A-203ENST00000448428 USP9YO00507 2555 aaPredicted RBP11.71□□□□□ -0.53
PRPF40A-203ENST00000448428 ACOT7O00154 380 aa11.71□□□□□ -0.53
PRPF40A-203ENST00000448428 TP53I11O14683 189 aa11.71□□□□□ -0.53
PRPF40A-203ENST00000448428 LSM1O15116 133 aaKnown RBP11.71□□□□□ -0.53
PRPF40A-203ENST00000448428 ABCB1P08183 1280 aaPredicted RBP11.71□□□□□ -0.53
PRPF40A-203ENST00000448428 DRD5P21918 477 aa11.71□□□□□ -0.53
PRPF40A-203ENST00000448428 COL8A1P27658 744 aa11.71□□□□□ -0.53
PRPF40A-203ENST00000448428 ABCD3P28288 659 aa11.71□□□□□ -0.53
PRPF40A-203ENST00000448428 PTGS2P35354 604 aa11.71□□□□□ -0.53
PRPF40A-203ENST00000448428 MAGEA5P43359 124 aa11.71□□□□□ -0.53
PRPF40A-203ENST00000448428 PPICP45877 212 aa11.71□□□□□ -0.53
PRPF40A-203ENST00000448428 NRG3P56975 720 aa11.71□□□□□ -0.53
PRPF40A-203ENST00000448428 KCNJ2P63252 427 aa11.71□□□□□ -0.53
PRPF40A-203ENST00000448428 MPP2Q14168 576 aa11.71□□□□□ -0.53
PRPF40A-203ENST00000448428 NNATQ16517 81 aa11.71□□□□□ -0.53
PRPF40A-203ENST00000448428 RFTN2Q52LD8 501 aaPredicted RBP11.71□□□□□ -0.53
PRPF40A-203ENST00000448428 SH2D4BQ5SQS7 431 aa11.71□□□□□ -0.53
PRPF40A-203ENST00000448428 CES4AQ5XG92 561 aa11.71□□□□□ -0.53
PRPF40A-203ENST00000448428 NUDCD3Q8IVD9 361 aa11.71□□□□□ -0.53
PRPF40A-203ENST00000448428 DDIASQ8IXT1 998 aa11.71□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms