RNA–Protein interactions for RNA: ENST00000443711.2

USP40-206, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 628 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-206ENST00000443711 PRAMEF2O60811 474 aa14.68□□□□□ -0.06
USP40-206ENST00000443711 COQ9O75208 318 aa14.68□□□□□ -0.06
USP40-206ENST00000443711 ERN1O75460 977 aaKnown RBP14.68□□□□□ -0.06
USP40-206ENST00000443711 KCNH1O95259 989 aa14.68□□□□□ -0.06
USP40-206ENST00000443711 CBX7O95931 251 aa14.68□□□□□ -0.06
USP40-206ENST00000443711 GSNP06396 782 aa14.68□□□□□ -0.06
USP40-206ENST00000443711 CDKN2CP42773 168 aa14.68□□□□□ -0.06
USP40-206ENST00000443711 SLC37A1P57057 533 aa14.68□□□□□ -0.06
USP40-206ENST00000443711 KRT72Q14CN4 511 aa14.68□□□□□ -0.06
USP40-206ENST00000443711 DEFB109BQ30KR1 87 aa14.68□□□□□ -0.06
USP40-206ENST00000443711 BHLHB9Q6PI77 547 aa14.68□□□□□ -0.06
USP40-206ENST00000443711 INO80CQ6PI98 192 aaPredicted RBP14.68□□□□□ -0.06
USP40-206ENST00000443711 RETREG3Q86VR2 466 aa14.68□□□□□ -0.06
USP40-206ENST00000443711 ZNF321PQ8N8H1 164 aa14.68□□□□□ -0.06
USP40-206ENST00000443711 ZNF615Q8N8J6 731 aa14.68□□□□□ -0.06
USP40-206ENST00000443711 PCYOX1LQ8NBM8 494 aa14.68□□□□□ -0.06
USP40-206ENST00000443711 CLEC1AQ8NC01 280 aa14.68□□□□□ -0.06
USP40-206ENST00000443711 NUP43Q8NFH3 380 aa14.68□□□□□ -0.06
USP40-206ENST00000443711 OR52R1Q8NGF1 315 aa14.68□□□□□ -0.06
USP40-206ENST00000443711 OR56A1Q8NGH5 318 aa14.68□□□□□ -0.06
USP40-206ENST00000443711 ELP5Q8TE02 316 aa14.68□□□□□ -0.06
USP40-206ENST00000443711 FAM120BQ96EK7 910 aaKnown RBP14.68□□□□□ -0.06
USP40-206ENST00000443711 PHF12Q96QT6 1004 aa14.68□□□□□ -0.06
USP40-206ENST00000443711 TRIM4Q9C037 500 aa14.68□□□□□ -0.06
USP40-206ENST00000443711 PAIP1Q9H074 479 aaKnown RBP14.68□□□□□ -0.06
USP40-206ENST00000443711 ANKRA2Q9H9E1 313 aa14.68□□□□□ -0.06
USP40-206ENST00000443711 CPNE5Q9HCH3 593 aa14.68□□□□□ -0.06
USP40-206ENST00000443711 ZCCHC3Q9NUD5 404 aaKnown RBP14.68□□□□□ -0.06
USP40-206ENST00000443711 PRODH2Q9UF12 536 aa14.68□□□□□ -0.06
USP40-206ENST00000443711 DOCK10Q96BY6 2186 aa14.68□□□□□ -0.06
USP40-206ENST00000443711 MED13Q9UHV7 2174 aa14.68□□□□□ -0.06
USP40-206ENST00000443711 TRBV11-1A0A0K0K1C0 115 aa14.67□□□□□ -0.06
USP40-206ENST00000443711 CLPSP04118 112 aa14.67□□□□□ -0.06
USP40-206ENST00000443711 PRKAG1P54619 331 aa14.67□□□□□ -0.06
USP40-206ENST00000443711 Q0VFX4 171 aa14.67□□□□□ -0.06
USP40-206ENST00000443711 NFYCQ13952 458 aa14.67□□□□□ -0.06
USP40-206ENST00000443711 LRIF1Q5T3J3 769 aa14.67□□□□□ -0.06
USP40-206ENST00000443711 REP15Q6BDI9 236 aa14.67□□□□□ -0.06
USP40-206ENST00000443711 JMJD6Q6NYC1 403 aaPredicted RBP14.67□□□□□ -0.06
USP40-206ENST00000443711 HSDL2Q6YN16 418 aa14.67□□□□□ -0.06
USP40-206ENST00000443711 SLC29A4Q7RTT9 530 aa14.67□□□□□ -0.06
USP40-206ENST00000443711 SZRD1Q7Z422 152 aa14.67□□□□□ -0.06
USP40-206ENST00000443711 OR8K3Q8NH51 312 aa14.67□□□□□ -0.06
USP40-206ENST00000443711 NPAS2Q99743 824 aa14.67□□□□□ -0.06
USP40-206ENST00000443711 SLC35A5Q9BS91 424 aa14.67□□□□□ -0.06
USP40-206ENST00000443711 DEFB126Q9BYW3 111 aa14.67□□□□□ -0.06
USP40-206ENST00000443711 EFCAB1Q9HAE3 211 aa14.67□□□□□ -0.06
USP40-206ENST00000443711 ARL8BQ9NVJ2 186 aa14.67□□□□□ -0.06
USP40-206ENST00000443711 GID8Q9NWU2 228 aa14.67□□□□□ -0.06
USP40-206ENST00000443711 MAP10Q9P2G4 905 aa14.67□□□□□ -0.06
USP40-206ENST00000443711 TAGLN3Q9UI15 199 aa14.67□□□□□ -0.06
USP40-206ENST00000443711 RNF103-CHMP3A0A140T963 221 aa14.66□□□□□ -0.06
USP40-206ENST00000443711 CCT8L1PA6NM43 557 aa14.66□□□□□ -0.06
USP40-206ENST00000443711 MASP2O00187 686 aa14.66□□□□□ -0.06
USP40-206ENST00000443711 ZFAND5O76080 213 aa14.66□□□□□ -0.06
USP40-206ENST00000443711 NPPAP01160 153 aa14.66□□□□□ -0.06
USP40-206ENST00000443711 PTPN6P29350 595 aa14.66□□□□□ -0.06
USP40-206ENST00000443711 CHI3L1P36222 383 aaPredicted RBP14.66□□□□□ -0.06
USP40-206ENST00000443711 EMDP50402 254 aa14.66□□□□□ -0.06
USP40-206ENST00000443711 SOX8P57073 446 aa14.66□□□□□ -0.06
USP40-206ENST00000443711 RNF4P78317 190 aa14.66□□□□□ -0.06
USP40-206ENST00000443711 TP53BP2Q13625 1128 aa14.66□□□□□ -0.06
USP40-206ENST00000443711 MYBPC3Q14896 1274 aa14.66□□□□□ -0.06
USP40-206ENST00000443711 IRAK1BP1Q5VVH5 260 aa14.66□□□□□ -0.06
USP40-206ENST00000443711 HLA-DQA1Q5Y7H0 255 aa14.66□□□□□ -0.06
USP40-206ENST00000443711 DNAJC14Q6Y2X3 702 aaPredicted RBP14.66□□□□□ -0.06
USP40-206ENST00000443711 C6orf120Q7Z4R8 191 aa14.66□□□□□ -0.06
USP40-206ENST00000443711 DHDDSQ86SQ9 333 aa14.66□□□□□ -0.06
USP40-206ENST00000443711 AMER2Q8N7J2 671 aa14.66□□□□□ -0.06
USP40-206ENST00000443711 SIMC1Q8NDZ2 872 aa14.66□□□□□ -0.06
USP40-206ENST00000443711 OR5L2Q8NGL0 311 aa14.66□□□□□ -0.06
USP40-206ENST00000443711 OR5AK3PQ8NH89 298 aa14.66□□□□□ -0.06
USP40-206ENST00000443711 C16orf52Q8NHV5 167 aa14.66□□□□□ -0.06
USP40-206ENST00000443711 RCN3Q96D15 328 aa14.66□□□□□ -0.06
USP40-206ENST00000443711 NSL1Q96IY1 281 aa14.66□□□□□ -0.06
USP40-206ENST00000443711 THOC3Q96J01 351 aaKnown RBP14.66□□□□□ -0.06
USP40-206ENST00000443711 MS4A4EQ96PG1 132 aa14.66□□□□□ -0.06
USP40-206ENST00000443711 ING2Q9H160 280 aa14.66□□□□□ -0.06
USP40-206ENST00000443711 SLC6A13Q9NSD5 602 aa14.66□□□□□ -0.06
USP40-206ENST00000443711 ZNF223Q9UK11 482 aaPredicted RBP14.66□□□□□ -0.06
USP40-206ENST00000443711 PCDHB14Q9Y5E9 798 aa14.66□□□□□ -0.06
USP40-206ENST00000443711 HEMK1Q9Y5R4 338 aaPredicted RBP14.66□□□□□ -0.06
USP40-206ENST00000443711 FRYQ5TBA9 3013 aa14.65□□□□□ -0.06
USP40-206ENST00000443711 TTC36A6NLP5 189 aa14.65□□□□□ -0.06
USP40-206ENST00000443711 AIM2O14862 343 aa14.65□□□□□ -0.06
USP40-206ENST00000443711 PSMG1O95456 288 aa14.65□□□□□ -0.06
USP40-206ENST00000443711 KRT75O95678 551 aa14.65□□□□□ -0.06
USP40-206ENST00000443711 CELA2AP08217 269 aa14.65□□□□□ -0.06
USP40-206ENST00000443711 ITGAMP11215 1152 aa14.65□□□□□ -0.06
USP40-206ENST00000443711 ESRRAP11474 423 aaPredicted RBP14.65□□□□□ -0.06
USP40-206ENST00000443711 ITGA3P26006 1051 aa14.65□□□□□ -0.06
USP40-206ENST00000443711 PRIM2P49643 509 aa14.65□□□□□ -0.06
USP40-206ENST00000443711 MNAT1P51948 309 aa14.65□□□□□ -0.06
USP40-206ENST00000443711 DCAF7P61962 342 aa14.65□□□□□ -0.06
USP40-206ENST00000443711 CHAF1BQ13112 559 aa14.65□□□□□ -0.06
USP40-206ENST00000443711 DUSP8Q13202 625 aa14.65□□□□□ -0.06
USP40-206ENST00000443711 GAB1Q13480 694 aa14.65□□□□□ -0.06
USP40-206ENST00000443711 ART3Q13508 389 aa14.65□□□□□ -0.06
USP40-206ENST00000443711 TRMT5Q32P41 509 aaKnown RBP14.65□□□□□ -0.06
USP40-206ENST00000443711 SAXO2Q658L1 398 aa14.65□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms