RNA–Protein interactions for RNA: ENST00000437607.1

PTPRF-208, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 788 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-208ENST00000437607 CA13Q8N1Q1 262 aa11.34□□□□□ -0.59
PTPRF-208ENST00000437607 AMER3Q8N944 861 aa11.34□□□□□ -0.59
PTPRF-208ENST00000437607 PCYOX1LQ8NBM8 494 aa11.34□□□□□ -0.59
PTPRF-208ENST00000437607 OR7A2PQ8NGA2 310 aa11.34□□□□□ -0.59
PTPRF-208ENST00000437607 BRIX1Q8TDN6 353 aaKnown RBP11.34□□□□□ -0.59
PTPRF-208ENST00000437607 TM4SF18Q96CE8 201 aa11.34□□□□□ -0.59
PTPRF-208ENST00000437607 KLHL29Q96CT2 875 aa11.34□□□□□ -0.59
PTPRF-208ENST00000437607 RCN3Q96D15 328 aa11.34□□□□□ -0.59
PTPRF-208ENST00000437607 ZNF764Q96H86 408 aaPredicted RBP11.34□□□□□ -0.59
PTPRF-208ENST00000437607 MAPKAP1Q9BPZ7 522 aa11.34□□□□□ -0.59
PTPRF-208ENST00000437607 CLK4Q9HAZ1 481 aaKnown RBP11.34□□□□□ -0.59
PTPRF-208ENST00000437607 FAM120CQ9NX05 1096 aaKnown RBP11.34□□□□□ -0.59
PTPRF-208ENST00000437607 EHD3Q9NZN3 535 aa11.34□□□□□ -0.59
PTPRF-208ENST00000437607 SH3BP4Q9P0V3 963 aa11.34□□□□□ -0.59
PTPRF-208ENST00000437607 ATP6V1HQ9UI12 483 aa11.34□□□□□ -0.59
PTPRF-208ENST00000437607 C3orf18Q9UK00 162 aa11.34□□□□□ -0.59
PTPRF-208ENST00000437607 DAPP1Q9UN19 280 aa11.34□□□□□ -0.59
PTPRF-208ENST00000437607 NDUFAF1Q9Y375 327 aa11.34□□□□□ -0.59
PTPRF-208ENST00000437607 ATG4BQ9Y4P1 393 aa11.34□□□□□ -0.59
PTPRF-208ENST00000437607 HCFC1P51610 2035 aa11.33□□□□□ -0.6
PTPRF-208ENST00000437607 CCDC168Q8NDH2 2452 aa11.33□□□□□ -0.6
PTPRF-208ENST00000437607 A0A1B0GUH1 482 aa11.33□□□□□ -0.6
PTPRF-208ENST00000437607 A0A1W2PP18 115 aa11.33□□□□□ -0.6
PTPRF-208ENST00000437607 A0A1W2PQ72 361 aa11.33□□□□□ -0.6
PTPRF-208ENST00000437607 RASSF2P50749 326 aa11.33□□□□□ -0.6
PTPRF-208ENST00000437607 DGKQP52824 942 aa11.33□□□□□ -0.6
PTPRF-208ENST00000437607 SNRPNP63162 240 aaKnown RBP11.33□□□□□ -0.6
PTPRF-208ENST00000437607 ACTN3Q08043 901 aaPredicted RBP11.33□□□□□ -0.6
PTPRF-208ENST00000437607 BNIP1Q12981 228 aa11.33□□□□□ -0.6
PTPRF-208ENST00000437607 RUNX2Q13950 521 aa11.33□□□□□ -0.6
PTPRF-208ENST00000437607 DSG2Q14126 1118 aa11.33□□□□□ -0.6
PTPRF-208ENST00000437607 VPS26BQ4G0F5 336 aa11.33□□□□□ -0.6
PTPRF-208ENST00000437607 COQ5Q5HYK3 327 aa11.33□□□□□ -0.6
PTPRF-208ENST00000437607 C6orf10Q5SRN2 563 aa11.33□□□□□ -0.6
PTPRF-208ENST00000437607 ANXA8L1Q5VT79 327 aa11.33□□□□□ -0.6
PTPRF-208ENST00000437607 ANKRD26P1Q6NSI1 321 aa11.33□□□□□ -0.6
PTPRF-208ENST00000437607 DNAJC14Q6Y2X3 702 aaPredicted RBP11.33□□□□□ -0.6
PTPRF-208ENST00000437607 YTHDF3Q7Z739 585 aaKnown RBP11.33□□□□□ -0.6
PTPRF-208ENST00000437607 KBTBD2Q8IY47 623 aa11.33□□□□□ -0.6
PTPRF-208ENST00000437607 MMP21Q8N119 569 aa11.33□□□□□ -0.6
PTPRF-208ENST00000437607 VPS37AQ8NEZ2 397 aa11.33□□□□□ -0.6
PTPRF-208ENST00000437607 OR5T3Q8NGG3 340 aa11.33□□□□□ -0.6
PTPRF-208ENST00000437607 ZFP28Q8NHY6 868 aa11.33□□□□□ -0.6
PTPRF-208ENST00000437607 PUM2Q8TB72 1066 aaKnown RBP eCLIP11.33□□□□□ -0.6
PTPRF-208ENST00000437607 ITLN2Q8WWU7 325 aaPredicted RBP11.33□□□□□ -0.6
PTPRF-208ENST00000437607 NR4A3Q92570 626 aa11.33□□□□□ -0.6
PTPRF-208ENST00000437607 HAS2Q92819 552 aa11.33□□□□□ -0.6
PTPRF-208ENST00000437607 VPS33AQ96AX1 596 aa11.33□□□□□ -0.6
PTPRF-208ENST00000437607 EXOSC8Q96B26 276 aaKnown RBP11.33□□□□□ -0.6
PTPRF-208ENST00000437607 MIEF2Q96C03 454 aa11.33□□□□□ -0.6
PTPRF-208ENST00000437607 OR52E6Q96RD3 313 aa11.33□□□□□ -0.6
PTPRF-208ENST00000437607 CSF3RQ99062 836 aa11.33□□□□□ -0.6
PTPRF-208ENST00000437607 DUSP26Q9BV47 211 aa11.33□□□□□ -0.6
PTPRF-208ENST00000437607 RBCK1Q9BYM8 510 aa11.33□□□□□ -0.6
PTPRF-208ENST00000437607 BHLHE41Q9C0J9 482 aaPredicted RBP11.33□□□□□ -0.6
PTPRF-208ENST00000437607 PRDM9Q9NQV7 894 aa11.33□□□□□ -0.6
PTPRF-208ENST00000437607 NDE1Q9NXR1 346 aa11.33□□□□□ -0.6
PTPRF-208ENST00000437607 PTGFRNQ9P2B2 879 aa11.33□□□□□ -0.6
PTPRF-208ENST00000437607 ZNF282Q9UDV7 671 aaPredicted RBP11.33□□□□□ -0.6
PTPRF-208ENST00000437607 UTS2RQ9UKP6 389 aa11.33□□□□□ -0.6
PTPRF-208ENST00000437607 ASB4Q9Y574 426 aa11.33□□□□□ -0.6
PTPRF-208ENST00000437607 PCDHA9Q9Y5H5 950 aa11.33□□□□□ -0.6
PTPRF-208ENST00000437607 IGHV1-45A0A0A0MS14 117 aa11.32□□□□□ -0.6
PTPRF-208ENST00000437607 NSG1A0A0A6YYJ2 146 aa11.32□□□□□ -0.6
PTPRF-208ENST00000437607 A0A1W2PR48 441 aa11.32□□□□□ -0.6
PTPRF-208ENST00000437607 AIM2O14862 343 aa11.32□□□□□ -0.6
PTPRF-208ENST00000437607 CHST10O43529 356 aa11.32□□□□□ -0.6
PTPRF-208ENST00000437607 TBX19O60806 448 aa11.32□□□□□ -0.6
PTPRF-208ENST00000437607 PRKRAO75569 313 aaKnown RBP11.32□□□□□ -0.6
PTPRF-208ENST00000437607 WISP2O76076 250 aa11.32□□□□□ -0.6
PTPRF-208ENST00000437607 F10P00742 488 aa11.32□□□□□ -0.6
PTPRF-208ENST00000437607 MST1P26927 711 aa11.32□□□□□ -0.6
PTPRF-208ENST00000437607 PPP2R1BP30154 601 aa11.32□□□□□ -0.6
PTPRF-208ENST00000437607 ZFP36L2P47974 494 aaKnown RBP11.32□□□□□ -0.6
PTPRF-208ENST00000437607 ARG2P78540 354 aa11.32□□□□□ -0.6
PTPRF-208ENST00000437607 MAT1AQ00266 395 aaKnown RBP11.32□□□□□ -0.6
PTPRF-208ENST00000437607 OCA2Q04671 838 aa11.32□□□□□ -0.6
PTPRF-208ENST00000437607 EEF1A2Q05639 463 aaKnown RBP11.32□□□□□ -0.6
PTPRF-208ENST00000437607 LRRC74AQ0VAA2 488 aa11.32□□□□□ -0.6
PTPRF-208ENST00000437607 ART3Q13508 389 aa11.32□□□□□ -0.6
PTPRF-208ENST00000437607 NFYCQ13952 458 aa11.32□□□□□ -0.6
PTPRF-208ENST00000437607 MAPKAPK3Q16644 382 aa11.32□□□□□ -0.6
PTPRF-208ENST00000437607 TRMT5Q32P41 509 aaKnown RBP11.32□□□□□ -0.6
PTPRF-208ENST00000437607 ZNF385BQ569K4 471 aa11.32□□□□□ -0.6
PTPRF-208ENST00000437607 C18orf63Q68DL7 685 aa11.32□□□□□ -0.6
PTPRF-208ENST00000437607 OR4F3Q6IEY1 312 aa11.32□□□□□ -0.6
PTPRF-208ENST00000437607 SLC48A1Q6P1K1 146 aa11.32□□□□□ -0.6
PTPRF-208ENST00000437607 C16orf89Q6UX73 402 aa11.32□□□□□ -0.6
PTPRF-208ENST00000437607 NDUFAF7Q7L592 441 aa11.32□□□□□ -0.6
PTPRF-208ENST00000437607 DHDDSQ86SQ9 333 aa11.32□□□□□ -0.6
PTPRF-208ENST00000437607 SAMD14Q8IZD0 417 aaPredicted RBP11.32□□□□□ -0.6
PTPRF-208ENST00000437607 NATD1Q8N6N6 113 aa11.32□□□□□ -0.6
PTPRF-208ENST00000437607 SIRT6Q8N6T7 355 aa11.32□□□□□ -0.6
PTPRF-208ENST00000437607 OR8J2Q8NGG1 315 aa11.32□□□□□ -0.6
PTPRF-208ENST00000437607 PEX11GQ96HA9 241 aa11.32□□□□□ -0.6
PTPRF-208ENST00000437607 ITCHQ96J02 903 aa11.32□□□□□ -0.6
PTPRF-208ENST00000437607 VPS50Q96JG6 964 aa11.32□□□□□ -0.6
PTPRF-208ENST00000437607 NPAS2Q99743 824 aa11.32□□□□□ -0.6
PTPRF-208ENST00000437607 YIPF2Q9BWQ6 316 aa11.32□□□□□ -0.6
PTPRF-208ENST00000437607 RPF2Q9H7B2 306 aaKnown RBP11.32□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms