RNA–Protein interactions for RNA: ENST00000429035.1

SDC1-204, Transcript of syndecan 1, humanhuman

TSL 3

Gene SDC1, Length 646 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-204ENST00000429035 DNASE1P24855 282 aa13.27□□□□□ -0.29
SDC1-204ENST00000429035 ABCD3P28288 659 aa13.27□□□□□ -0.29
SDC1-204ENST00000429035 GCKP35557 465 aa13.27□□□□□ -0.29
SDC1-204ENST00000429035 FEN1P39748 380 aaKnown RBP13.27□□□□□ -0.29
SDC1-204ENST00000429035 PEX19P40855 299 aa13.27□□□□□ -0.29
SDC1-204ENST00000429035 CASP3P42574 277 aa13.27□□□□□ -0.29
SDC1-204ENST00000429035 ZNF136P52737 540 aa13.27□□□□□ -0.29
SDC1-204ENST00000429035 DGKQP52824 942 aa13.27□□□□□ -0.29
SDC1-204ENST00000429035 CKAP4Q07065 602 aaKnown RBP13.27□□□□□ -0.29
SDC1-204ENST00000429035 TRAF3Q13114 568 aa13.27□□□□□ -0.29
SDC1-204ENST00000429035 EXOSC7Q15024 291 aaKnown RBP13.27□□□□□ -0.29
SDC1-204ENST00000429035 FAM219BQ5XKK7 198 aa13.27□□□□□ -0.29
SDC1-204ENST00000429035 FAM111BQ6SJ93 734 aa13.27□□□□□ -0.29
SDC1-204ENST00000429035 TAOK1Q7L7X3 1001 aa13.27□□□□□ -0.29
SDC1-204ENST00000429035 COMMD6Q7Z4G1 85 aa13.27□□□□□ -0.29
SDC1-204ENST00000429035 YRDCQ86U90 279 aaKnown RBP13.27□□□□□ -0.29
SDC1-204ENST00000429035 MMP21Q8N119 569 aa13.27□□□□□ -0.29
SDC1-204ENST00000429035 ZNF615Q8N8J6 731 aa13.27□□□□□ -0.29
SDC1-204ENST00000429035 OR1J4Q8NGS1 313 aa13.27□□□□□ -0.29
SDC1-204ENST00000429035 RDH11Q8TC12 318 aa13.27□□□□□ -0.29
SDC1-204ENST00000429035 ADIPOR1Q96A54 375 aa13.27□□□□□ -0.29
SDC1-204ENST00000429035 KLHL29Q96CT2 875 aa13.27□□□□□ -0.29
SDC1-204ENST00000429035 GPR78Q96P69 363 aa13.27□□□□□ -0.29
SDC1-204ENST00000429035 TIMP4Q99727 224 aa13.27□□□□□ -0.29
SDC1-204ENST00000429035 UGT2B28Q9BY64 529 aa13.27□□□□□ -0.29
SDC1-204ENST00000429035 ANGPTL4Q9BY76 406 aa13.27□□□□□ -0.29
SDC1-204ENST00000429035 EPB41L4BQ9H329 900 aa13.27□□□□□ -0.29
SDC1-204ENST00000429035 RASSF1Q9NS23 344 aa13.27□□□□□ -0.29
SDC1-204ENST00000429035 RYDENQ9NUL5 291 aaKnown RBP13.27□□□□□ -0.29
SDC1-204ENST00000429035 PCTPQ9UKL6 214 aa13.27□□□□□ -0.29
SDC1-204ENST00000429035 CBLCQ9ULV8 474 aa13.27□□□□□ -0.29
SDC1-204ENST00000429035 MAPRE3Q9UPY8 281 aa13.27□□□□□ -0.29
SDC1-204ENST00000429035 IKBKGQ9Y6K9 419 aa13.27□□□□□ -0.29
SDC1-204ENST00000429035 ZFHX3Q15911 3703 aa13.27□□□□□ -0.29
SDC1-204ENST00000429035 ANKRD33BA6NCL7 494 aa13.26□□□□□ -0.29
SDC1-204ENST00000429035 C2orf72A6NCS6 295 aa13.26□□□□□ -0.29
SDC1-204ENST00000429035 PPM1BO75688 479 aa13.26□□□□□ -0.29
SDC1-204ENST00000429035 ESRRBO95718 433 aa13.26□□□□□ -0.29
SDC1-204ENST00000429035 HPNP05981 417 aa13.26□□□□□ -0.29
SDC1-204ENST00000429035 RBP1P09455 135 aa13.26□□□□□ -0.29
SDC1-204ENST00000429035 PORP16435 677 aaPredicted RBP13.26□□□□□ -0.29
SDC1-204ENST00000429035 BMP7P18075 431 aa13.26□□□□□ -0.29
SDC1-204ENST00000429035 TCEA1P23193 301 aaKnown RBP13.26□□□□□ -0.29
SDC1-204ENST00000429035 CNTFP26441 200 aa13.26□□□□□ -0.29
SDC1-204ENST00000429035 GUCY2DQ02846 1103 aa13.26□□□□□ -0.29
SDC1-204ENST00000429035 FUT7Q11130 342 aa13.26□□□□□ -0.29
SDC1-204ENST00000429035 RCAN2Q14206 197 aa13.26□□□□□ -0.29
SDC1-204ENST00000429035 SF3B4Q15427 424 aaKnown RBP eCLIP13.26□□□□□ -0.29
SDC1-204ENST00000429035 DESI1Q6ICB0 168 aa13.26□□□□□ -0.29
SDC1-204ENST00000429035 FAM180BQ6P0A1 224 aa13.26□□□□□ -0.29
SDC1-204ENST00000429035 MILR1Q7Z6M3 343 aa13.26□□□□□ -0.29
SDC1-204ENST00000429035 CDC20BQ86Y33 519 aa13.26□□□□□ -0.29
SDC1-204ENST00000429035 FAM83FQ8NEG4 500 aaPredicted RBP13.26□□□□□ -0.29
SDC1-204ENST00000429035 ADCY4Q8NFM4 1077 aa13.26□□□□□ -0.29
SDC1-204ENST00000429035 OR7G1Q8NGA0 311 aa13.26□□□□□ -0.29
SDC1-204ENST00000429035 OR4F6Q8NGB9 312 aa13.26□□□□□ -0.29
SDC1-204ENST00000429035 SELENOMQ8WWX9 145 aa13.26□□□□□ -0.29
SDC1-204ENST00000429035 ABTB1Q969K4 478 aaPredicted RBP13.26□□□□□ -0.29
SDC1-204ENST00000429035 OMA1Q96E52 524 aa13.26□□□□□ -0.29
SDC1-204ENST00000429035 TMEM41AQ96HV5 264 aa13.26□□□□□ -0.29
SDC1-204ENST00000429035 SECISBP2Q96T21 854 aaKnown RBP13.26□□□□□ -0.29
SDC1-204ENST00000429035 HBEGFQ99075 208 aa13.26□□□□□ -0.29
SDC1-204ENST00000429035 FOXC2Q99958 501 aa13.26□□□□□ -0.29
SDC1-204ENST00000429035 PRDM14Q9GZV8 571 aa13.26□□□□□ -0.29
SDC1-204ENST00000429035 UBQLN3Q9H347 655 aa13.26□□□□□ -0.29
SDC1-204ENST00000429035 ACSS3Q9H6R3 686 aa13.26□□□□□ -0.29
SDC1-204ENST00000429035 GALNT9Q9HCQ5 603 aa13.26□□□□□ -0.29
SDC1-204ENST00000429035 FARSBQ9NSD9 589 aaKnown RBP13.26□□□□□ -0.29
SDC1-204ENST00000429035 CFL2Q9Y281 166 aa13.26□□□□□ -0.29
SDC1-204ENST00000429035 SETD2Q9BYW2 2564 aaPredicted RBP13.26□□□□□ -0.29
SDC1-204ENST00000429035 ITPR3Q14573 2671 aa13.25□□□□□ -0.29
SDC1-204ENST00000429035 TUBAL3A6NHL2 446 aa13.25□□□□□ -0.29
SDC1-204ENST00000429035 H0Y3Z8 333 aa13.25□□□□□ -0.29
SDC1-204ENST00000429035 STX16-NPEPL1H3BU86 382 aa13.25□□□□□ -0.29
SDC1-204ENST00000429035 STX16O14662 325 aa13.25□□□□□ -0.29
SDC1-204ENST00000429035 GUCY1B2O75343 617 aa13.25□□□□□ -0.29
SDC1-204ENST00000429035 PTPN6P29350 595 aa13.25□□□□□ -0.29
SDC1-204ENST00000429035 CEACAM8P31997 349 aaPredicted RBP13.25□□□□□ -0.29
SDC1-204ENST00000429035 TIMP3P35625 211 aa13.25□□□□□ -0.29
SDC1-204ENST00000429035 CPA2P48052 419 aa13.25□□□□□ -0.29
SDC1-204ENST00000429035 SRYQ05066 204 aa13.25□□□□□ -0.29
SDC1-204ENST00000429035 POU4F3Q15319 338 aa13.25□□□□□ -0.29
SDC1-204ENST00000429035 LTB4RQ15722 352 aa13.25□□□□□ -0.29
SDC1-204ENST00000429035 TSNAXIP1Q2TAA8 658 aa13.25□□□□□ -0.29
SDC1-204ENST00000429035 FNDC7Q5VTL7 733 aa13.25□□□□□ -0.29
SDC1-204ENST00000429035 NSUN5P2Q63ZY6 315 aa13.25□□□□□ -0.29
SDC1-204ENST00000429035 METTL2BQ6P1Q9 378 aaKnown RBP13.25□□□□□ -0.29
SDC1-204ENST00000429035 TGIF2LYQ8IUE0 185 aa13.25□□□□□ -0.29
SDC1-204ENST00000429035 METTL4Q8N3J2 472 aa13.25□□□□□ -0.29
SDC1-204ENST00000429035 OR52R1Q8NGF1 315 aa13.25□□□□□ -0.29
SDC1-204ENST00000429035 OR14L1PQ8NHC6 308 aa13.25□□□□□ -0.29
SDC1-204ENST00000429035 UHMK1Q8TAS1 419 aaKnown RBP13.25□□□□□ -0.29
SDC1-204ENST00000429035 FAM222BQ8WU58 562 aa13.25□□□□□ -0.29
SDC1-204ENST00000429035 NODALQ96S42 347 aa13.25□□□□□ -0.29
SDC1-204ENST00000429035 PAFAH2Q99487 392 aa13.25□□□□□ -0.29
SDC1-204ENST00000429035 NTMT1Q9BV86 223 aa13.25□□□□□ -0.29
SDC1-204ENST00000429035 CDC42EP4Q9H3Q1 356 aaKnown RBP13.25□□□□□ -0.29
SDC1-204ENST00000429035 ZBTB26Q9HCK0 441 aa13.25□□□□□ -0.29
SDC1-204ENST00000429035 SERHLQ9NQF3 203 aa13.25□□□□□ -0.29
SDC1-204ENST00000429035 PSD3Q9NYI0 1048 aa13.25□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 61.8 ms