RNA–Protein interactions for RNA: ENST00000409915.8

SF3B1-202, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2 BASIC

Gene SF3B1, Length 600 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-202ENST00000409915 TFDP3Q5H9I0 405 aa4.32□□□□□ -1.72
SF3B1-202ENST00000409915 AARS2Q5JTZ9 985 aaKnown RBP4.32□□□□□ -1.72
SF3B1-202ENST00000409915 PHF19Q5T6S3 580 aa4.32□□□□□ -1.72
SF3B1-202ENST00000409915 VWA5B1Q5TIE3 1220 aa4.32□□□□□ -1.72
SF3B1-202ENST00000409915 MARC1Q5VT66 337 aa4.32□□□□□ -1.72
SF3B1-202ENST00000409915 RAET1GQ6H3X3 334 aa4.32□□□□□ -1.72
SF3B1-202ENST00000409915 NAPEPLDQ6IQ20 393 aa4.32□□□□□ -1.72
SF3B1-202ENST00000409915 CLEC2AQ6UVW9 174 aa4.32□□□□□ -1.72
SF3B1-202ENST00000409915 GDPD4Q6W3E5 623 aa4.32□□□□□ -1.72
SF3B1-202ENST00000409915 MACC1Q6ZN28 852 aa4.32□□□□□ -1.72
SF3B1-202ENST00000409915 CFAP77Q6ZQR2 320 aa4.32□□□□□ -1.72
SF3B1-202ENST00000409915 RHOUQ7L0Q8 258 aa4.32□□□□□ -1.72
SF3B1-202ENST00000409915 GSTA5Q7RTV2 222 aa4.32□□□□□ -1.72
SF3B1-202ENST00000409915 SYVN1Q86TM6 617 aa4.32□□□□□ -1.72
SF3B1-202ENST00000409915 AKAP14Q86UN6 197 aa4.32□□□□□ -1.72
SF3B1-202ENST00000409915 VASH2Q86V25 355 aa4.32□□□□□ -1.72
SF3B1-202ENST00000409915 GPR180Q86V85 440 aa4.32□□□□□ -1.72
SF3B1-202ENST00000409915 AMZ2Q86W34 360 aa4.32□□□□□ -1.72
SF3B1-202ENST00000409915 CCDC25Q86WR0 208 aa4.32□□□□□ -1.72
SF3B1-202ENST00000409915 HPS6Q86YV9 775 aa4.32□□□□□ -1.72
SF3B1-202ENST00000409915 SERPINA12Q8IW75 414 aa4.32□□□□□ -1.72
SF3B1-202ENST00000409915 RCOR2Q8IZ40 523 aa4.32□□□□□ -1.72
SF3B1-202ENST00000409915 SYCE1Q8N0S2 351 aa4.32□□□□□ -1.72
SF3B1-202ENST00000409915 FAM109AQ8N4B1 249 aa4.32□□□□□ -1.72
SF3B1-202ENST00000409915 ARL14Q8N4G2 192 aa4.32□□□□□ -1.72
SF3B1-202ENST00000409915 UBL4BQ8N7F7 174 aa4.32□□□□□ -1.72
SF3B1-202ENST00000409915 OR2T34Q8NGX1 318 aa4.32□□□□□ -1.72
SF3B1-202ENST00000409915 ACTL9Q8TC94 416 aa4.32□□□□□ -1.72
SF3B1-202ENST00000409915 ACTRT1Q8TDG2 376 aa4.32□□□□□ -1.72
SF3B1-202ENST00000409915 PDCD6IPQ8WUM4 868 aaKnown RBP4.32□□□□□ -1.72
SF3B1-202ENST00000409915 C10orf82Q8WW14 230 aa4.32□□□□□ -1.72
SF3B1-202ENST00000409915 ATG4AQ8WYN0 398 aa4.32□□□□□ -1.72
SF3B1-202ENST00000409915 KCNJ9Q92806 393 aa4.32□□□□□ -1.72
SF3B1-202ENST00000409915 STMN2Q93045 179 aa4.32□□□□□ -1.72
SF3B1-202ENST00000409915 TAMM41Q96BW9 452 aa4.32□□□□□ -1.72
SF3B1-202ENST00000409915 MTBPQ96DY7 904 aa4.32□□□□□ -1.72
SF3B1-202ENST00000409915 RMND5BQ96G75 393 aaPredicted RBP4.32□□□□□ -1.72
SF3B1-202ENST00000409915 PPP1R16AQ96I34 528 aa4.32□□□□□ -1.72
SF3B1-202ENST00000409915 LOXL4Q96JB6 756 aa4.32□□□□□ -1.72
SF3B1-202ENST00000409915 HS6ST2Q96MM7 605 aa4.32□□□□□ -1.72
SF3B1-202ENST00000409915 ZNF599Q96NL3 588 aa4.32□□□□□ -1.72
SF3B1-202ENST00000409915 OR2A14Q96R47 310 aa4.32□□□□□ -1.72
SF3B1-202ENST00000409915 SLC29A1Q99808 456 aa4.32□□□□□ -1.72
SF3B1-202ENST00000409915 EGFL8Q99944 293 aa4.32□□□□□ -1.72
SF3B1-202ENST00000409915 GAL3ST1Q99999 423 aa4.32□□□□□ -1.72
SF3B1-202ENST00000409915 DPYSL5Q9BPU6 564 aa4.32□□□□□ -1.72
SF3B1-202ENST00000409915 WACQ9BTA9 647 aa4.32□□□□□ -1.72
SF3B1-202ENST00000409915 G6PC3Q9BUM1 346 aa4.32□□□□□ -1.72
SF3B1-202ENST00000409915 C9orf16Q9BUW7 83 aa4.32□□□□□ -1.72
SF3B1-202ENST00000409915 MRI1Q9BV20 369 aa4.32□□□□□ -1.72
SF3B1-202ENST00000409915 TPPP3Q9BW30 176 aa4.32□□□□□ -1.72
SF3B1-202ENST00000409915 GTPBP2Q9BX10 602 aaKnown RBP4.32□□□□□ -1.72
SF3B1-202ENST00000409915 KRTAP9-2Q9BYQ4 174 aa4.32□□□□□ -1.72
SF3B1-202ENST00000409915 RTN4RQ9BZR6 473 aa4.32□□□□□ -1.72
SF3B1-202ENST00000409915 TMEM168Q9H0V1 697 aa4.32□□□□□ -1.72
SF3B1-202ENST00000409915 P2RY12Q9H244 342 aa4.32□□□□□ -1.72
SF3B1-202ENST00000409915 Q9H521 79 aa4.32□□□□□ -1.72
SF3B1-202ENST00000409915 TFB2MQ9H5Q4 396 aaKnown RBP4.32□□□□□ -1.72
SF3B1-202ENST00000409915 SLA2Q9H6Q3 261 aa4.32□□□□□ -1.72
SF3B1-202ENST00000409915 AKIRIN1Q9H9L7 192 aaPredicted RBP4.32□□□□□ -1.72
SF3B1-202ENST00000409915 SGK2Q9HBY8 427 aa4.32□□□□□ -1.72
SF3B1-202ENST00000409915 FAM212BQ9NTI7 297 aaPredicted RBP4.32□□□□□ -1.72
SF3B1-202ENST00000409915 FGFR1OP2Q9NVK5 253 aa4.32□□□□□ -1.72
SF3B1-202ENST00000409915 RBM22Q9NW64 420 aaKnown RBP eCLIP4.32□□□□□ -1.729e-21■■■■□ 19.5
SF3B1-202ENST00000409915 FAM118AQ9NWS6 357 aa4.32□□□□□ -1.72
SF3B1-202ENST00000409915 NDE1Q9NXR1 346 aa4.32□□□□□ -1.72
SF3B1-202ENST00000409915 NPAP1Q9NZP6 1156 aa4.32□□□□□ -1.72
SF3B1-202ENST00000409915 HEY2Q9UBP5 337 aa4.32□□□□□ -1.72
SF3B1-202ENST00000409915 TRMT6Q9UJA5 497 aaKnown RBP4.32□□□□□ -1.72
SF3B1-202ENST00000409915 HAO1Q9UJM8 370 aa4.32□□□□□ -1.72
SF3B1-202ENST00000409915 PILRBQ9UKJ0 227 aa4.32□□□□□ -1.72
SF3B1-202ENST00000409915 SCML1Q9UN30 329 aa4.32□□□□□ -1.72
SF3B1-202ENST00000409915 DIMT1Q9UNQ2 313 aaKnown RBP4.32□□□□□ -1.72
SF3B1-202ENST00000409915 ZFR2Q9UPR6 939 aaKnown RBP4.32□□□□□ -1.72
SF3B1-202ENST00000409915 EIF3LQ9Y262 564 aaKnown RBP4.32□□□□□ -1.72
SF3B1-202ENST00000409915 UBE2J1Q9Y385 318 aaPredicted RBP4.32□□□□□ -1.72
SF3B1-202ENST00000409915 SBDSQ9Y3A5 250 aaKnown RBP eCLIP4.32□□□□□ -1.72
SF3B1-202ENST00000409915 ZNF175Q9Y473 711 aa4.32□□□□□ -1.72
SF3B1-202ENST00000409915 U3KQV3 271 aa4.32□□□□□ -1.72
SF3B1-202ENST00000409915 SPACA6W5XKT8 324 aa4.32□□□□□ -1.72
SF3B1-202ENST00000409915 SHROOM3Q8TF72 1996 aa4.32□□□□□ -1.72
SF3B1-202ENST00000409915 TNRC6BQ9UPQ9 1833 aaKnown RBP4.32□□□□□ -1.72
SF3B1-202ENST00000409915 DCHS1Q96JQ0 3298 aa4.32□□□□□ -1.72
SF3B1-202ENST00000409915 CEP250Q9BV73 2442 aa4.32□□□□□ -1.72
SF3B1-202ENST00000409915 PLXNA2O75051 1894 aa4.31□□□□□ -1.72
SF3B1-202ENST00000409915 MN1Q10571 1320 aaPredicted RBP4.31□□□□□ -1.72
SF3B1-202ENST00000409915 KRTAP9-6A0A140TA67 174 aa4.31□□□□□ -1.72
SF3B1-202ENST00000409915 CXorf51AA0A1B0GTR3 108 aa4.31□□□□□ -1.72
SF3B1-202ENST00000409915 A0A1B0GTW7 788 aa4.31□□□□□ -1.72
SF3B1-202ENST00000409915 LOC105378220A0A1B0GUY1 285 aaPredicted RBP4.31□□□□□ -1.72
SF3B1-202ENST00000409915 TSPAN11A1L157 253 aa4.31□□□□□ -1.72
SF3B1-202ENST00000409915 WDR91A4D1P6 747 aa4.31□□□□□ -1.72
SF3B1-202ENST00000409915 IGLON5A6NGN9 336 aa4.31□□□□□ -1.72
SF3B1-202ENST00000409915 TRPC5OSA6NMA1 111 aa4.31□□□□□ -1.72
SF3B1-202ENST00000409915 TCP11X1B4DZS4 312 aa4.31□□□□□ -1.72
SF3B1-202ENST00000409915 C10orf142B7Z368 130 aa4.31□□□□□ -1.72
SF3B1-202ENST00000409915 H3BSA7 217 aa4.31□□□□□ -1.72
SF3B1-202ENST00000409915 APOC4-APOC2K7ER74 178 aa4.31□□□□□ -1.72
SF3B1-202ENST00000409915 MATN3O15232 486 aa4.31□□□□□ -1.72
SF3B1-202ENST00000409915 SLC22A2O15244 555 aa4.31□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms