RNA–Protein interactions for RNA: ENST00000409435.5

SCN9A-202, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN9A, Length 5,967 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-202ENST00000409435 MALSU1Q96EH3 234 aa6.95□□□□□ -1.3
SCN9A-202ENST00000409435 GAL3ST1Q99999 423 aa6.95□□□□□ -1.3
SCN9A-202ENST00000409435 TRMOQ9BU70 441 aa6.95□□□□□ -1.3
SCN9A-202ENST00000409435 DUSP15Q9H1R2 295 aaPredicted RBP6.95□□□□□ -1.3
SCN9A-202ENST00000409435 SLA2Q9H6Q3 261 aa6.95□□□□□ -1.3
SCN9A-202ENST00000409435 LRTM1Q9HBL6 345 aa6.95□□□□□ -1.3
SCN9A-202ENST00000409435 PLEKHM1Q9Y4G2 1056 aa6.95□□□□□ -1.3
SCN9A-202ENST00000409435 TJP1Q07157 1748 aa6.95□□□□□ -1.3
SCN9A-202ENST00000409435 TNS1Q9HBL0 1735 aaKnown RBP6.95□□□□□ -1.3
SCN9A-202ENST00000409435 UBR3Q6ZT12 1888 aa6.95□□□□□ -1.3
SCN9A-202ENST00000409435 EFCAB9A8MZ26 197 aa6.95□□□□□ -1.3
SCN9A-202ENST00000409435 BPNT1O95861 308 aa6.95□□□□□ -1.3
SCN9A-202ENST00000409435 CHRNB1P11230 501 aa6.95□□□□□ -1.3
SCN9A-202ENST00000409435 CHMP24386 653 aa6.95□□□□□ -1.3
SCN9A-202ENST00000409435 CTSKP43235 329 aa6.95□□□□□ -1.3
SCN9A-202ENST00000409435 GPR3P46089 330 aa6.95□□□□□ -1.3
SCN9A-202ENST00000409435 SPIBQ01892 262 aa6.95□□□□□ -1.3
SCN9A-202ENST00000409435 PTPRCAPQ14761 206 aa6.95□□□□□ -1.3
SCN9A-202ENST00000409435 ZNF674Q2M3X9 581 aa6.95□□□□□ -1.3
SCN9A-202ENST00000409435 MTX3Q5HYI7 312 aa6.95□□□□□ -1.3
SCN9A-202ENST00000409435 C6orf52Q5T4I8 152 aa6.95□□□□□ -1.3
SCN9A-202ENST00000409435 PMS2CLQ68D20 193 aa6.95□□□□□ -1.3
SCN9A-202ENST00000409435 KCTD11Q693B1 232 aa6.95□□□□□ -1.3
SCN9A-202ENST00000409435 TOMM5Q8N4H5 51 aa6.95□□□□□ -1.3
SCN9A-202ENST00000409435 PIWIL2Q8TC59 973 aaKnown RBP6.95□□□□□ -1.3
SCN9A-202ENST00000409435 BCL7CQ8WUZ0 217 aaPredicted RBP6.95□□□□□ -1.3
SCN9A-202ENST00000409435 SH3YL1Q96HL8 342 aaPredicted RBP6.95□□□□□ -1.3
SCN9A-202ENST00000409435 OR14A2Q96R54 314 aa6.95□□□□□ -1.3
SCN9A-202ENST00000409435 MUC13Q9H3R2 512 aa6.95□□□□□ -1.3
SCN9A-202ENST00000409435 C1GALT1Q9NS00 363 aa6.95□□□□□ -1.3
SCN9A-202ENST00000409435 SEC14L3Q9UDX4 400 aa6.95□□□□□ -1.3
SCN9A-202ENST00000409435 SALL4Q9UJQ4 1053 aa6.95□□□□□ -1.3
SCN9A-202ENST00000409435 BORCS7-ASMTA0A0B4J1R7 106 aa6.94□□□□□ -1.3
SCN9A-202ENST00000409435 PET100P0DJ07 73 aa6.94□□□□□ -1.3
SCN9A-202ENST00000409435 CHRNA4P43681 627 aa6.94□□□□□ -1.3
SCN9A-202ENST00000409435 UNQ6494/PRO21346Q6UXR6 183 aa6.94□□□□□ -1.3
SCN9A-202ENST00000409435 ZNF433Q8N7K0 673 aaPredicted RBP6.94□□□□□ -1.3
SCN9A-202ENST00000409435 CHST4Q8NCG5 386 aa6.94□□□□□ -1.3
SCN9A-202ENST00000409435 SLC41A3Q96GZ6 507 aa6.94□□□□□ -1.3
SCN9A-202ENST00000409435 WDR77Q9BQA1 342 aaPredicted RBP6.94□□□□□ -1.3
SCN9A-202ENST00000409435 MOB1AQ9H8S9 216 aa6.94□□□□□ -1.3
SCN9A-202ENST00000409435 FSCN3Q9NQT6 498 aa6.94□□□□□ -1.3
SCN9A-202ENST00000409435 COQ4Q9Y3A0 265 aa6.94□□□□□ -1.3
SCN9A-202ENST00000409435 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP6.94□□□□□ -1.3
SCN9A-202ENST00000409435 K7ESM1 405 aa6.94□□□□□ -1.3
SCN9A-202ENST00000409435 MASP2O00187 686 aa6.94□□□□□ -1.3
SCN9A-202ENST00000409435 BHLHE40O14503 412 aa6.94□□□□□ -1.3
SCN9A-202ENST00000409435 HCRTR2O43614 444 aa6.94□□□□□ -1.3
SCN9A-202ENST00000409435 OR10H3O60404 316 aa6.94□□□□□ -1.3
SCN9A-202ENST00000409435 PEX11AO75192 247 aa6.94□□□□□ -1.3
SCN9A-202ENST00000409435 RAB36O95755 333 aa6.94□□□□□ -1.3
SCN9A-202ENST00000409435 GTF2F2P13984 249 aa6.94□□□□□ -1.3
SCN9A-202ENST00000409435 IL1RNP18510 177 aa6.94□□□□□ -1.3
SCN9A-202ENST00000409435 TPSB2P20231 275 aa6.94□□□□□ -1.3
SCN9A-202ENST00000409435 XCR1P46094 333 aa6.94□□□□□ -1.3
SCN9A-202ENST00000409435 LIMK2P53671 638 aa6.94□□□□□ -1.3
SCN9A-202ENST00000409435 PSMA6P60900 246 aaKnown RBP6.94□□□□□ -1.3
SCN9A-202ENST00000409435 SEMA5AQ13591 1074 aa6.94□□□□□ -1.3
SCN9A-202ENST00000409435 TPSAB1Q15661 275 aa6.94□□□□□ -1.3
SCN9A-202ENST00000409435 ZNF528Q3MIS6 628 aa6.94□□□□□ -1.3
SCN9A-202ENST00000409435 TIGD3Q6B0B8 471 aa6.94□□□□□ -1.3
SCN9A-202ENST00000409435 OGFOD2Q6N063 350 aa6.94□□□□□ -1.3
SCN9A-202ENST00000409435 ZC3HAV1Q7Z2W4 902 aaKnown RBP6.94□□□□□ -1.3
SCN9A-202ENST00000409435 PIGWQ7Z7B1 504 aa6.94□□□□□ -1.3
SCN9A-202ENST00000409435 SCD5Q86SK9 330 aa6.94□□□□□ -1.3
SCN9A-202ENST00000409435 PHTF2Q8N3S3 785 aa6.94□□□□□ -1.3
SCN9A-202ENST00000409435 GALNT11Q8NCW6 608 aa6.94□□□□□ -1.3
SCN9A-202ENST00000409435 THRSPQ92748 146 aa6.94□□□□□ -1.3
SCN9A-202ENST00000409435 TIMD4Q96H15 378 aa6.94□□□□□ -1.3
SCN9A-202ENST00000409435 ZNF559Q9BR84 538 aa6.94□□□□□ -1.3
SCN9A-202ENST00000409435 RHOJQ9H4E5 214 aa6.94□□□□□ -1.3
SCN9A-202ENST00000409435 ARHGAP20Q9P2F6 1191 aa6.94□□□□□ -1.3
SCN9A-202ENST00000409435 NME7Q9Y5B8 376 aa6.94□□□□□ -1.3
SCN9A-202ENST00000409435 FKBP7Q9Y680 259 aa6.94□□□□□ -1.3
SCN9A-202ENST00000409435 C2orf92A0A1B0GVN3 265 aa6.94□□□□□ -1.3
SCN9A-202ENST00000409435 PLSCR5A0PG75 271 aa6.94□□□□□ -1.3
SCN9A-202ENST00000409435 HTR3EA5X5Y0 456 aa6.94□□□□□ -1.3
SCN9A-202ENST00000409435 VSTM2BA6NLU5 285 aa6.94□□□□□ -1.3
SCN9A-202ENST00000409435 PATE3B3GLJ2 98 aa6.94□□□□□ -1.3
SCN9A-202ENST00000409435 RFXANKO14593 260 aa6.94□□□□□ -1.3
SCN9A-202ENST00000409435 BCAS1O75363 584 aaPredicted RBP6.94□□□□□ -1.3
SCN9A-202ENST00000409435 DNAJB1P25685 340 aa6.94□□□□□ -1.3
SCN9A-202ENST00000409435 ACRV1P26436 265 aa6.94□□□□□ -1.3
SCN9A-202ENST00000409435 SLC6A9P48067 706 aa6.94□□□□□ -1.3
SCN9A-202ENST00000409435 IDH3GP51553 393 aaPredicted RBP6.94□□□□□ -1.3
SCN9A-202ENST00000409435 CLRN1P58418 232 aa6.94□□□□□ -1.3
SCN9A-202ENST00000409435 YOD1Q5VVQ6 348 aaPredicted RBP6.94□□□□□ -1.3
SCN9A-202ENST00000409435 ATG9BQ674R7 924 aa6.94□□□□□ -1.3
SCN9A-202ENST00000409435 CXorf57Q6NSI4 855 aaKnown RBP6.94□□□□□ -1.3
SCN9A-202ENST00000409435 DNM1P34Q6PK57 102 aa6.94□□□□□ -1.3
SCN9A-202ENST00000409435 BOLLQ8N9W6 283 aaKnown RBP6.94□□□□□ -1.3
SCN9A-202ENST00000409435 TRMT61AQ96FX7 289 aaKnown RBP6.94□□□□□ -1.3
SCN9A-202ENST00000409435 DHRS4Q9BTZ2 278 aa6.94□□□□□ -1.3
SCN9A-202ENST00000409435 SEC61A2Q9H9S3 476 aa6.94□□□□□ -1.3
SCN9A-202ENST00000409435 FAIMQ9NVQ4 179 aa6.94□□□□□ -1.3
SCN9A-202ENST00000409435 MOCS1Q9NZB8 636 aa6.94□□□□□ -1.3
SCN9A-202ENST00000409435 ZNF230Q9UIE0 474 aaPredicted RBP6.94□□□□□ -1.3
SCN9A-202ENST00000409435 TMPRSS11EQ9UL52 423 aa6.94□□□□□ -1.3
SCN9A-202ENST00000409435 PDE10AQ9Y233 779 aa6.94□□□□□ -1.3
SCN9A-202ENST00000409435 KDM3BQ7LBC6 1761 aa6.94□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms