RNA–Protein interactions for RNA: ENST00000394943.7

LIMA1-202, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,669 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-202ENST00000394943 METTL21AQ8WXB1 218 aa6.5□□□□□ -1.37
LIMA1-202ENST00000394943 FAM120BQ96EK7 910 aaKnown RBP6.5□□□□□ -1.37
LIMA1-202ENST00000394943 OR10A5Q9H207 317 aa6.5□□□□□ -1.37
LIMA1-202ENST00000394943 PIGUQ9H490 435 aa6.5□□□□□ -1.37
LIMA1-202ENST00000394943 SLC25A37Q9NYZ2 338 aa6.5□□□□□ -1.37
LIMA1-202ENST00000394943 HEMK1Q9Y5R4 338 aaPredicted RBP6.5□□□□□ -1.37
LIMA1-202ENST00000394943 OR6C70A6NIJ9 312 aa6.49□□□□□ -1.37
LIMA1-202ENST00000394943 KLK10O43240 276 aa6.49□□□□□ -1.37
LIMA1-202ENST00000394943 PRKNO60260 465 aaPredicted RBP6.49□□□□□ -1.37
LIMA1-202ENST00000394943 LDB3O75112 727 aa6.49□□□□□ -1.37
LIMA1-202ENST00000394943 ZFAND5O76080 213 aa6.49□□□□□ -1.37
LIMA1-202ENST00000394943 GLSO94925 669 aaPredicted RBP6.49□□□□□ -1.37
LIMA1-202ENST00000394943 IL33O95760 270 aa6.49□□□□□ -1.37
LIMA1-202ENST00000394943 HLCSP50747 726 aa6.49□□□□□ -1.37
LIMA1-202ENST00000394943 CLCN2P51788 898 aa6.49□□□□□ -1.37
LIMA1-202ENST00000394943 HBA1P69905 142 aa6.49□□□□□ -1.37
LIMA1-202ENST00000394943 FADDQ13158 208 aa6.49□□□□□ -1.37
LIMA1-202ENST00000394943 TMEM44Q2T9K0 475 aa6.49□□□□□ -1.37
LIMA1-202ENST00000394943 ARHGAP11BQ3KRB8 267 aa6.49□□□□□ -1.37
LIMA1-202ENST00000394943 FAM47EQ6ZV65 393 aa6.49□□□□□ -1.37
LIMA1-202ENST00000394943 CDRT4Q8N9R6 151 aa6.49□□□□□ -1.37
LIMA1-202ENST00000394943 TOR1AIP2Q8NFQ8 470 aa6.49□□□□□ -1.37
LIMA1-202ENST00000394943 NCLNQ969V3 563 aa6.49□□□□□ -1.37
LIMA1-202ENST00000394943 ITCHQ96J02 903 aa6.49□□□□□ -1.37
LIMA1-202ENST00000394943 UBL7Q96S82 380 aaPredicted RBP6.49□□□□□ -1.37
LIMA1-202ENST00000394943 SLC25A23Q9BV35 468 aa6.49□□□□□ -1.37
LIMA1-202ENST00000394943 FOLH1BQ9HBA9 442 aa6.49□□□□□ -1.37
LIMA1-202ENST00000394943 PLSCR2Q9NRY7 297 aa6.49□□□□□ -1.37
LIMA1-202ENST00000394943 MYOTQ9UBF9 498 aa6.49□□□□□ -1.37
LIMA1-202ENST00000394943 YARS2Q9Y2Z4 477 aaKnown RBP6.49□□□□□ -1.37
LIMA1-202ENST00000394943 SCN2AQ99250 2005 aa6.49□□□□□ -1.37
LIMA1-202ENST00000394943 CEP250Q9BV73 2442 aa6.49□□□□□ -1.37
LIMA1-202ENST00000394943 NSG1A0A0A6YYJ2 146 aa6.49□□□□□ -1.37
LIMA1-202ENST00000394943 ATP6AP2A0A1C7CYW4 349 aa6.49□□□□□ -1.37
LIMA1-202ENST00000394943 A0A1W2PRB8 838 aa6.49□□□□□ -1.37
LIMA1-202ENST00000394943 C7orf72A4D263 438 aa6.49□□□□□ -1.37
LIMA1-202ENST00000394943 C17orf105B2RV13 164 aa6.49□□□□□ -1.37
LIMA1-202ENST00000394943 ATP6AP2O75787 350 aa6.49□□□□□ -1.37
LIMA1-202ENST00000394943 DCTN3O75935 186 aa6.49□□□□□ -1.37
LIMA1-202ENST00000394943 CDK9P50750 372 aaKnown RBP6.49□□□□□ -1.37
LIMA1-202ENST00000394943 SEC24CP53992 1094 aa6.49□□□□□ -1.37
LIMA1-202ENST00000394943 PNLIPRP2P54317 469 aa6.49□□□□□ -1.37
LIMA1-202ENST00000394943 ACTN3Q08043 901 aaPredicted RBP6.49□□□□□ -1.37
LIMA1-202ENST00000394943 FUT5Q11128 374 aa6.49□□□□□ -1.37
LIMA1-202ENST00000394943 ERV3-1Q14264 604 aa6.49□□□□□ -1.37
LIMA1-202ENST00000394943 ZNF141Q15928 474 aa6.49□□□□□ -1.37
LIMA1-202ENST00000394943 MEP1AQ16819 746 aa6.49□□□□□ -1.37
LIMA1-202ENST00000394943 ZSWIM7Q19AV6 140 aa6.49□□□□□ -1.37
LIMA1-202ENST00000394943 SPANXN4Q5MJ08 99 aa6.49□□□□□ -1.37
LIMA1-202ENST00000394943 MLIPQ5VWP3 458 aa6.49□□□□□ -1.37
LIMA1-202ENST00000394943 FAM111BQ6SJ93 734 aa6.49□□□□□ -1.37
LIMA1-202ENST00000394943 SERPINA11Q86U17 422 aa6.49□□□□□ -1.37
LIMA1-202ENST00000394943 VASH2Q86V25 355 aa6.49□□□□□ -1.37
LIMA1-202ENST00000394943 RETREG3Q86VR2 466 aa6.49□□□□□ -1.37
LIMA1-202ENST00000394943 SLC30A8Q8IWU4 369 aa6.49□□□□□ -1.37
LIMA1-202ENST00000394943 FBXW8Q8N3Y1 598 aa6.49□□□□□ -1.37
LIMA1-202ENST00000394943 IL22RA1Q8N6P7 574 aa6.49□□□□□ -1.37
LIMA1-202ENST00000394943 EFCAB3Q8N7B9 438 aa6.49□□□□□ -1.37
LIMA1-202ENST00000394943 OR52N2Q8NGI0 321 aa6.49□□□□□ -1.37
LIMA1-202ENST00000394943 CIDECQ96AQ7 238 aaPredicted RBP6.49□□□□□ -1.37
LIMA1-202ENST00000394943 KLHL29Q96CT2 875 aa6.49□□□□□ -1.37
LIMA1-202ENST00000394943 CNTNAP3BQ96NU0 1288 aa6.49□□□□□ -1.37
LIMA1-202ENST00000394943 CNTNAP3Q9BZ76 1288 aa6.49□□□□□ -1.37
LIMA1-202ENST00000394943 SLC7A5P2Q9GIP4 190 aa6.49□□□□□ -1.37
LIMA1-202ENST00000394943 IL1RL2Q9HB29 575 aa6.49□□□□□ -1.37
LIMA1-202ENST00000394943 GIMAP4Q9NUV9 329 aa6.49□□□□□ -1.37
LIMA1-202ENST00000394943 BAIAP2L1Q9UHR4 511 aa6.49□□□□□ -1.37
LIMA1-202ENST00000394943 LEF1Q9UJU2 399 aaPredicted RBP6.49□□□□□ -1.37
LIMA1-202ENST00000394943 ENTPD4Q9Y227 616 aa6.49□□□□□ -1.37
LIMA1-202ENST00000394943 GNG14A0A1W2PPG7 69 aa6.49□□□□□ -1.37
LIMA1-202ENST00000394943 GBAP04062 536 aa6.49□□□□□ -1.37
LIMA1-202ENST00000394943 SERPIND1P05546 499 aa6.49□□□□□ -1.37
LIMA1-202ENST00000394943 COX7A2P14406 83 aa6.49□□□□□ -1.37
LIMA1-202ENST00000394943 PIGAP37287 484 aa6.49□□□□□ -1.37
LIMA1-202ENST00000394943 CD97P48960 835 aa6.49□□□□□ -1.37
LIMA1-202ENST00000394943 PRIM2P49643 509 aa6.49□□□□□ -1.37
LIMA1-202ENST00000394943 PCBP3P57721 371 aaKnown RBP6.49□□□□□ -1.37
LIMA1-202ENST00000394943 PAOXQ6QHF9 649 aa6.49□□□□□ -1.37
LIMA1-202ENST00000394943 GALNT16Q8N428 558 aa6.49□□□□□ -1.37
LIMA1-202ENST00000394943 METTL27Q8N6F8 245 aaPredicted RBP6.49□□□□□ -1.37
LIMA1-202ENST00000394943 C16orf52Q8NHV5 167 aa6.49□□□□□ -1.37
LIMA1-202ENST00000394943 SPPL2AQ8TCT8 520 aa6.49□□□□□ -1.37
LIMA1-202ENST00000394943 TMEM41AQ96HV5 264 aa6.49□□□□□ -1.37
LIMA1-202ENST00000394943 C1orf50Q9BV19 199 aa6.49□□□□□ -1.37
LIMA1-202ENST00000394943 BTBD2Q9BX70 525 aa6.49□□□□□ -1.37
LIMA1-202ENST00000394943 ACTRT3Q9BYD9 372 aa6.49□□□□□ -1.37
LIMA1-202ENST00000394943 ZNF350Q9GZX5 532 aa6.49□□□□□ -1.37
LIMA1-202ENST00000394943 RAD21L1Q9H4I0 556 aa6.49□□□□□ -1.37
LIMA1-202ENST00000394943 CORO2BQ9UQ03 480 aa6.49□□□□□ -1.37
LIMA1-202ENST00000394943 A0A0G2JN53 185 aa6.48□□□□□ -1.37
LIMA1-202ENST00000394943 A0A1B0GVC2 190 aa6.48□□□□□ -1.37
LIMA1-202ENST00000394943 CDC14CA4D256 554 aa6.48□□□□□ -1.37
LIMA1-202ENST00000394943 FADS1O60427 444 aa6.48□□□□□ -1.37
LIMA1-202ENST00000394943 TRIM3O75382 744 aaPredicted RBP6.48□□□□□ -1.37
LIMA1-202ENST00000394943 SNRPB2P08579 225 aaKnown RBP6.48□□□□□ -1.37
LIMA1-202ENST00000394943 ACP2P11117 423 aa6.48□□□□□ -1.37
LIMA1-202ENST00000394943 ITPKBP27987 946 aa6.48□□□□□ -1.37
LIMA1-202ENST00000394943 CPOXP36551 454 aa6.48□□□□□ -1.37
LIMA1-202ENST00000394943 SLC13A2Q13183 592 aa6.48□□□□□ -1.37
LIMA1-202ENST00000394943 GAB1Q13480 694 aa6.48□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 48.2 ms