RNA–Protein interactions for RNA: ENST00000393824.7

CUX1-204, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,331 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-204ENST00000393824 BTG1P62324 171 aa10.55□□□□□ -0.72
CUX1-204ENST00000393824 MXD1Q05195 221 aa10.55□□□□□ -0.72
CUX1-204ENST00000393824 SRSF11Q05519 484 aaKnown RBP10.55□□□□□ -0.72
CUX1-204ENST00000393824 HNRNPA0Q13151 305 aaKnown RBP10.55□□□□□ -0.72
CUX1-204ENST00000393824 TDGQ13569 410 aa10.55□□□□□ -0.72
CUX1-204ENST00000393824 ENPP2Q13822 863 aa10.55□□□□□ -0.72
CUX1-204ENST00000393824 SF3A2Q15428 464 aaKnown RBP10.55□□□□□ -0.72
CUX1-204ENST00000393824 ZNF648Q5T619 568 aaPredicted RBP10.55□□□□□ -0.72
CUX1-204ENST00000393824 LYPLAL1Q5VWZ2 237 aa10.55□□□□□ -0.72
CUX1-204ENST00000393824 PTRHD1Q6GMV3 140 aaKnown RBP10.55□□□□□ -0.72
CUX1-204ENST00000393824 TYW3Q6IPR3 259 aaKnown RBP10.55□□□□□ -0.72
CUX1-204ENST00000393824 KLHL17Q6TDP4 642 aa10.55□□□□□ -0.72
CUX1-204ENST00000393824 CRTC1Q6UUV9 634 aa10.55□□□□□ -0.72
CUX1-204ENST00000393824 ARSKQ6UWY0 536 aa10.55□□□□□ -0.72
CUX1-204ENST00000393824 KIAA1324Q6UXG2 1013 aaKnown RBP10.55□□□□□ -0.72
CUX1-204ENST00000393824 TPRG1Q6ZUI0 275 aa10.55□□□□□ -0.72
CUX1-204ENST00000393824 COMMD7Q86VX2 200 aa10.55□□□□□ -0.72
CUX1-204ENST00000393824 PHC2Q8IXK0 858 aa10.55□□□□□ -0.72
CUX1-204ENST00000393824 Q8N402 240 aa10.55□□□□□ -0.72
CUX1-204ENST00000393824 SLC37A3Q8NCC5 494 aa10.55□□□□□ -0.72
CUX1-204ENST00000393824 KLHL6Q8WZ60 621 aa10.55□□□□□ -0.72
CUX1-204ENST00000393824 CREB3L1Q96BA8 519 aa10.55□□□□□ -0.72
CUX1-204ENST00000393824 PANX1Q96RD7 426 aa10.55□□□□□ -0.72
CUX1-204ENST00000393824 EGFL8Q99944 293 aa10.55□□□□□ -0.72
CUX1-204ENST00000393824 ACPTQ9BZG2 426 aa10.55□□□□□ -0.72
CUX1-204ENST00000393824 FOLH1BQ9HBA9 442 aa10.55□□□□□ -0.72
CUX1-204ENST00000393824 GALNT9Q9HCQ5 603 aa10.55□□□□□ -0.72
CUX1-204ENST00000393824 TXNL4BQ9NX01 149 aaKnown RBP10.55□□□□□ -0.72
CUX1-204ENST00000393824 IL17CQ9P0M4 197 aa10.55□□□□□ -0.72
CUX1-204ENST00000393824 B4GALT6Q9UBX8 382 aa10.55□□□□□ -0.72
CUX1-204ENST00000393824 TMCC3Q9ULS5 477 aa10.55□□□□□ -0.72
CUX1-204ENST00000393824 CSNK1G3Q9Y6M4 447 aa10.55□□□□□ -0.72
CUX1-204ENST00000393824 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP10.54□□□□□ -0.72
CUX1-204ENST00000393824 A0A1W2PQF6 199 aa10.54□□□□□ -0.72
CUX1-204ENST00000393824 ZAR1LA6NP61 321 aa10.54□□□□□ -0.72
CUX1-204ENST00000393824 MAGEB17A8MXT2 336 aa10.54□□□□□ -0.72
CUX1-204ENST00000393824 INMT-MINDY4F8WBC2 141 aa10.54□□□□□ -0.72
CUX1-204ENST00000393824 H0YC42 278 aa10.54□□□□□ -0.72
CUX1-204ENST00000393824 M0R129 80 aa10.54□□□□□ -0.72
CUX1-204ENST00000393824 GAPDHSO14556 408 aaPredicted RBP10.54□□□□□ -0.72
CUX1-204ENST00000393824 FPGTO14772 594 aa10.54□□□□□ -0.72
CUX1-204ENST00000393824 PLOD3O60568 738 aa10.54□□□□□ -0.72
CUX1-204ENST00000393824 SCN2BO60939 215 aa10.54□□□□□ -0.72
CUX1-204ENST00000393824 IFNA16P05015 189 aa10.54□□□□□ -0.72
CUX1-204ENST00000393824 HBQ1P09105 142 aa10.54□□□□□ -0.72
CUX1-204ENST00000393824 TIMP2P16035 220 aa10.54□□□□□ -0.72
CUX1-204ENST00000393824 HK1P19367 917 aa10.54□□□□□ -0.72
CUX1-204ENST00000393824 SSTR4P31391 388 aa10.54□□□□□ -0.72
CUX1-204ENST00000393824 RECQLP46063 649 aaPredicted RBP10.54□□□□□ -0.72
CUX1-204ENST00000393824 VASPP50552 380 aaPredicted RBP10.54□□□□□ -0.72
CUX1-204ENST00000393824 SELENOWP63302 87 aa10.54□□□□□ -0.72
CUX1-204ENST00000393824 PTSQ03393 145 aa10.54□□□□□ -0.72
CUX1-204ENST00000393824 CCINQ13939 588 aa10.54□□□□□ -0.72
CUX1-204ENST00000393824 BOP1Q14137 746 aaKnown RBP10.54□□□□□ -0.72
CUX1-204ENST00000393824 KLHL12Q53G59 568 aa10.54□□□□□ -0.72
CUX1-204ENST00000393824 SGO1Q5FBB7 561 aa10.54□□□□□ -0.72
CUX1-204ENST00000393824 ZNF600Q6ZNG1 722 aa10.54□□□□□ -0.72
CUX1-204ENST00000393824 PTCHD4Q6ZW05 846 aa10.54□□□□□ -0.72
CUX1-204ENST00000393824 BMP8AQ7Z5Y6 402 aa10.54□□□□□ -0.72
CUX1-204ENST00000393824 RBFAQ8N0V3 343 aa10.54□□□□□ -0.72
CUX1-204ENST00000393824 SLC34A3Q8N130 599 aa10.54□□□□□ -0.72
CUX1-204ENST00000393824 LGI4Q8N135 537 aa10.54□□□□□ -0.72
CUX1-204ENST00000393824 NANOGP1Q8N7R0 232 aa10.54□□□□□ -0.72
CUX1-204ENST00000393824 PROKR2Q8NFJ6 384 aa10.54□□□□□ -0.72
CUX1-204ENST00000393824 OR9Q1Q8NGQ5 310 aa10.54□□□□□ -0.72
CUX1-204ENST00000393824 ZNF431Q8TF32 576 aaPredicted RBP10.54□□□□□ -0.72
CUX1-204ENST00000393824 AP3S1Q92572 193 aa10.54□□□□□ -0.72
CUX1-204ENST00000393824 TSSK3Q96PN8 268 aa10.54□□□□□ -0.72
CUX1-204ENST00000393824 DPH2Q9BQC3 489 aaPredicted RBP10.54□□□□□ -0.72
CUX1-204ENST00000393824 TMEM43Q9BTV4 400 aa10.54□□□□□ -0.72
CUX1-204ENST00000393824 MND1Q9BWT6 205 aa10.54□□□□□ -0.72
CUX1-204ENST00000393824 NT5DC2Q9H857 520 aa10.54□□□□□ -0.72
CUX1-204ENST00000393824 ERVMER34-1Q9H9K5 563 aa10.54□□□□□ -0.72
CUX1-204ENST00000393824 ZNF224Q9NZL3 707 aa10.54□□□□□ -0.72
CUX1-204ENST00000393824 KLHL42Q9P2K6 505 aa10.54□□□□□ -0.72
CUX1-204ENST00000393824 CA14Q9ULX7 337 aa10.54□□□□□ -0.72
CUX1-204ENST00000393824 FKBP7Q9Y680 259 aa10.54□□□□□ -0.72
CUX1-204ENST00000393824 GON4LQ3T8J9 2241 aa10.54□□□□□ -0.72
CUX1-204ENST00000393824 EDDM13A0A1B0GTR0 161 aa10.53□□□□□ -0.72
CUX1-204ENST00000393824 IQCF5A8MTL0 148 aa10.53□□□□□ -0.72
CUX1-204ENST00000393824 SGK494L7N484 410 aa10.53□□□□□ -0.72
CUX1-204ENST00000393824 QSOX1O00391 747 aa10.53□□□□□ -0.72
CUX1-204ENST00000393824 TSPAN4O14817 238 aa10.53□□□□□ -0.72
CUX1-204ENST00000393824 CHP2O43745 196 aa10.53□□□□□ -0.72
CUX1-204ENST00000393824 STK16O75716 305 aa10.53□□□□□ -0.72
CUX1-204ENST00000393824 PAHP00439 452 aa10.53□□□□□ -0.72
CUX1-204ENST00000393824 SRFP11831 508 aa10.53□□□□□ -0.72
CUX1-204ENST00000393824 PRPS1L1P21108 318 aa10.53□□□□□ -0.72
CUX1-204ENST00000393824 TACR1P25103 407 aa10.53□□□□□ -0.72
CUX1-204ENST00000393824 HAAOP46952 286 aa10.53□□□□□ -0.72
CUX1-204ENST00000393824 PPP3R1P63098 170 aa10.53□□□□□ -0.72
CUX1-204ENST00000393824 ELAVL3Q14576 367 aaKnown RBP10.53□□□□□ -0.72
CUX1-204ENST00000393824 BICRALQ6AI39 1079 aa10.53□□□□□ -0.72
CUX1-204ENST00000393824 TMEM107Q6UX40 140 aa10.53□□□□□ -0.72
CUX1-204ENST00000393824 LAS2Q8IYD9 372 aa10.53□□□□□ -0.72
CUX1-204ENST00000393824 TMEM145Q8NBT3 493 aa10.53□□□□□ -0.72
CUX1-204ENST00000393824 SCRN2Q96FV2 425 aa10.53□□□□□ -0.72
CUX1-204ENST00000393824 FCRL1Q96LA6 429 aa10.53□□□□□ -0.72
CUX1-204ENST00000393824 POLR2J2Q9GZM3 115 aaKnown RBP10.53□□□□□ -0.72
CUX1-204ENST00000393824 ABCG8Q9H221 673 aa10.53□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms