RNA–Protein interactions for RNA: ENST00000389629.8

RTF1-201, Transcript of RTF1 homolog, Paf1/RNA polymerase II complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RTF1, Length 5,021 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1-201ENST00000389629 GRHL3Q8TE85 626 aa13.55□□□□□ -0.24
RTF1-201ENST00000389629 HMGB4Q8WW32 186 aa13.55□□□□□ -0.24
RTF1-201ENST00000389629 PPP1R16AQ96I34 528 aa13.55□□□□□ -0.24
RTF1-201ENST00000389629 ZIC5Q96T25 663 aa13.55□□□□□ -0.24
RTF1-201ENST00000389629 EXO5Q9H790 373 aa13.55□□□□□ -0.24
RTF1-201ENST00000389629 QPCTLQ9NXS2 382 aa13.55□□□□□ -0.24
RTF1-201ENST00000389629 FBXL3Q9UKT7 428 aa13.55□□□□□ -0.24
RTF1-201ENST00000389629 A0A1W2PRQ8 180 aa13.55□□□□□ -0.24
RTF1-201ENST00000389629 ZNF780AO75290 641 aaPredicted RBP13.55□□□□□ -0.24
RTF1-201ENST00000389629 RASGRP1O95267 797 aa13.55□□□□□ -0.24
RTF1-201ENST00000389629 IGLV3-25P01717 112 aa13.55□□□□□ -0.24
RTF1-201ENST00000389629 HRGP04196 525 aa13.55□□□□□ -0.24
RTF1-201ENST00000389629 OR12D2P58182 307 aa13.55□□□□□ -0.24
RTF1-201ENST00000389629 SGCGQ13326 291 aa13.55□□□□□ -0.24
RTF1-201ENST00000389629 SCGB2B2Q4G0G5 96 aa13.55□□□□□ -0.24
RTF1-201ENST00000389629 KRT77Q7Z794 578 aa13.55□□□□□ -0.24
RTF1-201ENST00000389629 RANBP3LQ86VV4 465 aaPredicted RBP13.55□□□□□ -0.24
RTF1-201ENST00000389629 SAP130Q9H0E3 1048 aa13.55□□□□□ -0.24
RTF1-201ENST00000389629 GPR4P46093 362 aa13.55□□□□□ -0.24
RTF1-201ENST00000389629 PITPNBP48739 271 aa13.55□□□□□ -0.24
RTF1-201ENST00000389629 RPS25P62851 125 aaKnown RBP13.55□□□□□ -0.24
RTF1-201ENST00000389629 TAF13Q15543 124 aa13.55□□□□□ -0.24
RTF1-201ENST00000389629 PRAMEF17Q5VTA0 474 aa13.55□□□□□ -0.24
RTF1-201ENST00000389629 C6orf120Q7Z4R8 191 aa13.55□□□□□ -0.24
RTF1-201ENST00000389629 GLCCI1Q86VQ1 547 aa13.55□□□□□ -0.24
RTF1-201ENST00000389629 PROKR2Q8NFJ6 384 aa13.55□□□□□ -0.24
RTF1-201ENST00000389629 TRMT10AQ8TBZ6 339 aaKnown RBP13.55□□□□□ -0.24
RTF1-201ENST00000389629 SMG9Q9H0W8 520 aaKnown RBP13.55□□□□□ -0.24
RTF1-201ENST00000389629 NEUROD4Q9HD90 331 aa13.55□□□□□ -0.24
RTF1-201ENST00000389629 ADAP2Q9NPF8 381 aa13.55□□□□□ -0.24
RTF1-201ENST00000389629 NDRG2Q9UN36 371 aaKnown RBP13.55□□□□□ -0.24
RTF1-201ENST00000389629 CDH10Q9Y6N8 788 aa13.55□□□□□ -0.24
RTF1-201ENST00000389629 TBC1D3BA6NDS4 549 aa13.55□□□□□ -0.24
RTF1-201ENST00000389629 SLC16A5O15375 505 aa13.55□□□□□ -0.24
RTF1-201ENST00000389629 CCL16O15467 120 aa13.55□□□□□ -0.24
RTF1-201ENST00000389629 SPDEFO95238 335 aa13.55□□□□□ -0.24
RTF1-201ENST00000389629 PROS1P07225 676 aa13.55□□□□□ -0.24
RTF1-201ENST00000389629 TBPL1P62380 186 aa13.55□□□□□ -0.24
RTF1-201ENST00000389629 ADAM8P78325 824 aa13.55□□□□□ -0.24
RTF1-201ENST00000389629 SLX4IPQ5VYV7 408 aa13.55□□□□□ -0.24
RTF1-201ENST00000389629 PAQR7Q86WK9 346 aa13.55□□□□□ -0.24
RTF1-201ENST00000389629 OOSP2Q86WS3 158 aa13.55□□□□□ -0.24
RTF1-201ENST00000389629 LINC00471Q8N535 108 aa13.55□□□□□ -0.24
RTF1-201ENST00000389629 ANKK1Q8NFD2 765 aa13.55□□□□□ -0.24
RTF1-201ENST00000389629 OR6F1Q8NGZ6 308 aa13.55□□□□□ -0.24
RTF1-201ENST00000389629 HMX1Q9NP08 348 aaPredicted RBP13.55□□□□□ -0.24
RTF1-201ENST00000389629 PCDHB16Q9NRJ7 776 aa13.55□□□□□ -0.24
RTF1-201ENST00000389629 THSD1Q9NS62 852 aa13.55□□□□□ -0.24
RTF1-201ENST00000389629 TEX10Q9NXF1 929 aaPredicted RBP13.55□□□□□ -0.24
RTF1-201ENST00000389629 CNIH4Q9P003 139 aa13.55□□□□□ -0.24
RTF1-201ENST00000389629 GNG8Q9UK08 70 aa13.55□□□□□ -0.24
RTF1-201ENST00000389629 ZNFX1Q9P2E3 1918 aaKnown RBP13.55□□□□□ -0.24
RTF1-201ENST00000389629 ZNF432O94892 652 aa13.54□□□□□ -0.24
RTF1-201ENST00000389629 EPHX1P07099 455 aa13.54□□□□□ -0.24
RTF1-201ENST00000389629 VIPR1P32241 457 aa13.54□□□□□ -0.24
RTF1-201ENST00000389629 TMEM115Q12893 351 aaPredicted RBP13.54□□□□□ -0.24
RTF1-201ENST00000389629 GET4Q7L5D6 327 aaPredicted RBP13.54□□□□□ -0.24
RTF1-201ENST00000389629 OSTF1Q92882 214 aa13.54□□□□□ -0.24
RTF1-201ENST00000389629 TMEM185BQ9H7F4 350 aa13.54□□□□□ -0.24
RTF1-201ENST00000389629 NIPAL2Q9H841 368 aa13.54□□□□□ -0.24
RTF1-201ENST00000389629 TRPV4Q9HBA0 871 aa13.54□□□□□ -0.24
RTF1-201ENST00000389629 BTNL2Q9UIR0 455 aa13.54□□□□□ -0.24
RTF1-201ENST00000389629 OR10H1Q9Y4A9 318 aa13.54□□□□□ -0.24
RTF1-201ENST00000389629 C5orf51A6NDU8 294 aa13.54□□□□□ -0.24
RTF1-201ENST00000389629 SCG5P05408 212 aa13.54□□□□□ -0.24
RTF1-201ENST00000389629 C1GALT1C1LP0DN25 315 aa13.54□□□□□ -0.24
RTF1-201ENST00000389629 ACVR2AP27037 513 aa13.54□□□□□ -0.24
RTF1-201ENST00000389629 GCGRP47871 477 aa13.54□□□□□ -0.24
RTF1-201ENST00000389629 MLLT11Q13015 90 aaPredicted RBP13.54□□□□□ -0.24
RTF1-201ENST00000389629 NDUFAF5Q5TEU4 345 aa13.54□□□□□ -0.24
RTF1-201ENST00000389629 FAM46CQ5VWP2 391 aa13.54□□□□□ -0.24
RTF1-201ENST00000389629 ACBD7Q8N6N7 88 aa13.54□□□□□ -0.24
RTF1-201ENST00000389629 OR8K3Q8NH51 312 aa13.54□□□□□ -0.24
RTF1-201ENST00000389629 WDR48Q8TAF3 677 aa13.54□□□□□ -0.24
RTF1-201ENST00000389629 ADAMTS19Q8TE59 1207 aa13.54□□□□□ -0.24
RTF1-201ENST00000389629 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP13.54□□□□□ -0.24
RTF1-201ENST00000389629 SLAMF7Q9NQ25 335 aa13.54□□□□□ -0.24
RTF1-201ENST00000389629 COPZ2Q9P299 210 aa13.54□□□□□ -0.24
RTF1-201ENST00000389629 PPT2Q9UMR5 302 aa13.54□□□□□ -0.24
RTF1-201ENST00000389629 ZNF670-ZNF695F2Z2N8 137 aa13.54□□□□□ -0.24
RTF1-201ENST00000389629 POLR1CO15160 346 aaPredicted RBP13.54□□□□□ -0.24
RTF1-201ENST00000389629 PRKYO43930 277 aa13.54□□□□□ -0.24
RTF1-201ENST00000389629 OR10H2O60403 315 aa13.54□□□□□ -0.24
RTF1-201ENST00000389629 GATBO75879 557 aaKnown RBP13.54□□□□□ -0.24
RTF1-201ENST00000389629 CD9P21926 228 aa13.54□□□□□ -0.24
RTF1-201ENST00000389629 SOX2P48431 317 aa13.54□□□□□ -0.24
RTF1-201ENST00000389629 CEBPGP53567 150 aa13.54□□□□□ -0.24
RTF1-201ENST00000389629 TRAM2Q15035 370 aa13.54□□□□□ -0.24
RTF1-201ENST00000389629 POMZP3Q6PJE2 187 aa13.54□□□□□ -0.24
RTF1-201ENST00000389629 MOSPD2Q8NHP6 518 aa13.54□□□□□ -0.24
RTF1-201ENST00000389629 OTUB2Q96DC9 234 aa13.54□□□□□ -0.24
RTF1-201ENST00000389629 PRKAG2Q9UGJ0 569 aa13.54□□□□□ -0.24
RTF1-201ENST00000389629 ZNF821O75541 412 aaPredicted RBP13.54□□□□□ -0.24
RTF1-201ENST00000389629 POP7O75817 140 aaKnown RBP13.54□□□□□ -0.24
RTF1-201ENST00000389629 MSL3P1P0C860 447 aa13.54□□□□□ -0.24
RTF1-201ENST00000389629 TAGLNQ01995 201 aaKnown RBP13.54□□□□□ -0.24
RTF1-201ENST00000389629 SMCO1Q147U7 214 aa13.54□□□□□ -0.24
RTF1-201ENST00000389629 CYHR1Q6ZMK1 362 aa13.54□□□□□ -0.24
RTF1-201ENST00000389629 ZNF783Q6ZMS7 281 aa13.54□□□□□ -0.24
RTF1-201ENST00000389629 INO80EQ8NBZ0 244 aaPredicted RBP13.54□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms