RNA–Protein interactions for RNA: ENST00000389040.9

VPS53-202, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS53, Length 1,903 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-202ENST00000389040 ZNF304Q9HCX3 659 aa9.58□□□□□ -0.88
VPS53-202ENST00000389040 MYNNQ9NPC7 610 aa9.58□□□□□ -0.88
VPS53-202ENST00000389040 ATAD3AQ9NVI7 634 aa9.58□□□□□ -0.88
VPS53-202ENST00000389040 SH3BP4Q9P0V3 963 aa9.58□□□□□ -0.88
VPS53-202ENST00000389040 ZNF282Q9UDV7 671 aaPredicted RBP9.58□□□□□ -0.88
VPS53-202ENST00000389040 VPS4AQ9UN37 437 aa9.58□□□□□ -0.88
VPS53-202ENST00000389040 MAP4K5Q9Y4K4 846 aa9.58□□□□□ -0.88
VPS53-202ENST00000389040 MAGED1Q9Y5V3 778 aaPredicted RBP9.58□□□□□ -0.88
VPS53-202ENST00000389040 GMEB1Q9Y692 573 aa9.58□□□□□ -0.88
VPS53-202ENST00000389040 SPTBN2O15020 2390 aa9.58□□□□□ -0.88
VPS53-202ENST00000389040 IGLV3-12A0A075B6K2 115 aa9.58□□□□□ -0.88
VPS53-202ENST00000389040 C1QTNF9BB2RNN3 333 aa9.58□□□□□ -0.88
VPS53-202ENST00000389040 AGRPO00253 132 aa9.58□□□□□ -0.88
VPS53-202ENST00000389040 OR6B1O95007 311 aa9.58□□□□□ -0.88
VPS53-202ENST00000389040 ZNF682O95780 498 aa9.58□□□□□ -0.88
VPS53-202ENST00000389040 CLIC3O95833 236 aa9.58□□□□□ -0.88
VPS53-202ENST00000389040 GBAP04062 536 aa9.58□□□□□ -0.88
VPS53-202ENST00000389040 KLK1P06870 262 aa9.58□□□□□ -0.88
VPS53-202ENST00000389040 FURINP09958 794 aa9.58□□□□□ -0.88
VPS53-202ENST00000389040 C1QTNF9P0C862 333 aa9.58□□□□□ -0.88
VPS53-202ENST00000389040 THRBP10828 461 aa9.58□□□□□ -0.88
VPS53-202ENST00000389040 MAGEA2P43356 314 aa9.58□□□□□ -0.88
VPS53-202ENST00000389040 IST1P53990 364 aa9.58□□□□□ -0.88
VPS53-202ENST00000389040 TUBA4AP68366 448 aa9.58□□□□□ -0.88
VPS53-202ENST00000389040 HYAL2Q12891 473 aa9.58□□□□□ -0.88
VPS53-202ENST00000389040 CLN3Q13286 438 aa9.58□□□□□ -0.88
VPS53-202ENST00000389040 GAB1Q13480 694 aa9.58□□□□□ -0.88
VPS53-202ENST00000389040 PDE7AQ13946 482 aa9.58□□□□□ -0.88
VPS53-202ENST00000389040 MYBPC3Q14896 1274 aa9.58□□□□□ -0.88
VPS53-202ENST00000389040 KHDRBS2Q5VWX1 349 aaKnown RBP9.58□□□□□ -0.88
VPS53-202ENST00000389040 OFCC1Q8IZS5 231 aa9.58□□□□□ -0.88
VPS53-202ENST00000389040 ZFP90Q8TF47 636 aa9.58□□□□□ -0.88
VPS53-202ENST00000389040 C16orf78Q8WTQ4 265 aa9.58□□□□□ -0.88
VPS53-202ENST00000389040 ZCCHC14Q8WYQ9 949 aaKnown RBP9.58□□□□□ -0.88
VPS53-202ENST00000389040 MR1Q95460 341 aa9.58□□□□□ -0.88
VPS53-202ENST00000389040 MS4A6EQ96DS6 147 aa9.58□□□□□ -0.88
VPS53-202ENST00000389040 RDH12Q96NR8 316 aa9.58□□□□□ -0.88
VPS53-202ENST00000389040 MS4A8Q9BY19 250 aa9.58□□□□□ -0.88
VPS53-202ENST00000389040 CHST8Q9H2A9 424 aa9.58□□□□□ -0.88
VPS53-202ENST00000389040 SOX17Q9H6I2 414 aaPredicted RBP9.58□□□□□ -0.88
VPS53-202ENST00000389040 MKKSQ9NPJ1 570 aaPredicted RBP9.58□□□□□ -0.88
VPS53-202ENST00000389040 IFT80Q9P2H3 777 aaPredicted RBP9.58□□□□□ -0.88
VPS53-202ENST00000389040 GPN3Q9UHW5 284 aaPredicted RBP9.58□□□□□ -0.88
VPS53-202ENST00000389040 RPS6KA6Q9UK32 745 aa9.58□□□□□ -0.88
VPS53-202ENST00000389040 NCOR2Q9Y618 2525 aa9.58□□□□□ -0.88
VPS53-202ENST00000389040 BLACEA4D250 179 aa9.57□□□□□ -0.88
VPS53-202ENST00000389040 TERTO14746 1132 aaKnown RBP9.57□□□□□ -0.88
VPS53-202ENST00000389040 P2RX6O15547 441 aa9.57□□□□□ -0.88
VPS53-202ENST00000389040 FOXS1O43638 330 aa9.57□□□□□ -0.88
VPS53-202ENST00000389040 GALR3O60755 368 aaPredicted RBP9.57□□□□□ -0.88
VPS53-202ENST00000389040 SEC24DO94855 1032 aaPredicted RBP9.57□□□□□ -0.88
VPS53-202ENST00000389040 KLHL18O94889 574 aa9.57□□□□□ -0.88
VPS53-202ENST00000389040 FESP07332 822 aa9.57□□□□□ -0.88
VPS53-202ENST00000389040 ABCB1P08183 1280 aaPredicted RBP9.57□□□□□ -0.88
VPS53-202ENST00000389040 TCN2P20062 427 aa9.57□□□□□ -0.88
VPS53-202ENST00000389040 GSTT1P30711 240 aa9.57□□□□□ -0.88
VPS53-202ENST00000389040 KDELR2P33947 212 aa9.57□□□□□ -0.88
VPS53-202ENST00000389040 TAS2R50P59544 299 aa9.57□□□□□ -0.88
VPS53-202ENST00000389040 PPP2R2BQ00005 443 aa9.57□□□□□ -0.88
VPS53-202ENST00000389040 VEZF1Q14119 521 aa9.57□□□□□ -0.88
VPS53-202ENST00000389040 ZNF385BQ569K4 471 aa9.57□□□□□ -0.88
VPS53-202ENST00000389040 FAM71E1Q6IPT2 247 aa9.57□□□□□ -0.88
VPS53-202ENST00000389040 IKBIPQ70UQ0 350 aa9.57□□□□□ -0.88
VPS53-202ENST00000389040 TRIML2Q8N7C3 387 aa9.57□□□□□ -0.88
VPS53-202ENST00000389040 ZSCAN1Q8NBB4 408 aa9.57□□□□□ -0.88
VPS53-202ENST00000389040 KCT2Q8NC54 265 aa9.57□□□□□ -0.88
VPS53-202ENST00000389040 OR10Q1Q8NGQ4 319 aa9.57□□□□□ -0.88
VPS53-202ENST00000389040 GOT1L1Q8NHS2 421 aaPredicted RBP9.57□□□□□ -0.88
VPS53-202ENST00000389040 UTP15Q8TED0 518 aaKnown RBP9.57□□□□□ -0.88
VPS53-202ENST00000389040 RGMAQ96B86 450 aa9.57□□□□□ -0.88
VPS53-202ENST00000389040 PPCDCQ96CD2 204 aa9.57□□□□□ -0.88
VPS53-202ENST00000389040 DGCR14Q96DF8 476 aaKnown RBP9.57□□□□□ -0.88
VPS53-202ENST00000389040 QRFPRQ96P65 431 aa9.57□□□□□ -0.88
VPS53-202ENST00000389040 OR1F2PQ96R84 312 aa9.57□□□□□ -0.88
VPS53-202ENST00000389040 CCNL2Q96S94 520 aaPredicted RBP9.57□□□□□ -0.88
VPS53-202ENST00000389040 RBM4BQ9BQ04 359 aaKnown RBP9.57□□□□□ -0.88
VPS53-202ENST00000389040 RBM4Q9BWF3 364 aaKnown RBP9.57□□□□□ -0.88
VPS53-202ENST00000389040 OSBPL10Q9BXB5 764 aa9.57□□□□□ -0.88
VPS53-202ENST00000389040 STARD5Q9NSY2 213 aa9.57□□□□□ -0.88
VPS53-202ENST00000389040 C14orf105Q9NVL8 296 aa9.57□□□□□ -0.88
VPS53-202ENST00000389040 MS4A12Q9NXJ0 267 aa9.57□□□□□ -0.88
VPS53-202ENST00000389040 USE1Q9NZ43 259 aa9.57□□□□□ -0.88
VPS53-202ENST00000389040 DHCR7Q9UBM7 475 aaKnown RBP9.57□□□□□ -0.88
VPS53-202ENST00000389040 NDOR1Q9UHB4 597 aa9.57□□□□□ -0.88
VPS53-202ENST00000389040 ADAM29Q9UKF5 820 aa9.57□□□□□ -0.88
VPS53-202ENST00000389040 FARSAQ9Y285 508 aaKnown RBP9.57□□□□□ -0.88
VPS53-202ENST00000389040 TRIM64A6NGJ6 449 aa9.56□□□□□ -0.88
VPS53-202ENST00000389040 VSTM2BA6NLU5 285 aa9.56□□□□□ -0.88
VPS53-202ENST00000389040 TLX3O43711 291 aaPredicted RBP9.56□□□□□ -0.88
VPS53-202ENST00000389040 AHCYL1O43865 530 aa9.56□□□□□ -0.88
VPS53-202ENST00000389040 E2F6O75461 281 aa9.56□□□□□ -0.88
VPS53-202ENST00000389040 SERPIND1P05546 499 aa9.56□□□□□ -0.88
VPS53-202ENST00000389040 CTSBP07858 339 aa9.56□□□□□ -0.88
VPS53-202ENST00000389040 GSTM5P46439 218 aa9.56□□□□□ -0.88
VPS53-202ENST00000389040 OCA2Q04671 838 aa9.56□□□□□ -0.88
VPS53-202ENST00000389040 C2orf80Q0P641 193 aa9.56□□□□□ -0.88
VPS53-202ENST00000389040 EPS8Q12929 822 aa9.56□□□□□ -0.88
VPS53-202ENST00000389040 NCF4Q15080 339 aa9.56□□□□□ -0.88
VPS53-202ENST00000389040 RGNQ15493 299 aa9.56□□□□□ -0.88
VPS53-202ENST00000389040 ZIK1Q3SY52 487 aaPredicted RBP9.56□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms