RNA–Protein interactions for RNA: ENST00000384622.1

RNU6-540P-201, Transcript of RNA, U6 small nuclear 540, pseudogene, humanhuman

BASIC

Gene RNU6-540P, Length 101 nt, Biotype snRNA, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU6-540P-201ENST00000384622 TIMM10P62072 90 aa-1.32□□□□□ -2.62
RNU6-540P-201ENST00000384622 MYL7Q01449 175 aa-1.32□□□□□ -2.62
RNU6-540P-201ENST00000384622 CD47Q08722 323 aa-1.32□□□□□ -2.62
RNU6-540P-201ENST00000384622 KIAA0087Q14695 138 aa-1.32□□□□□ -2.62
RNU6-540P-201ENST00000384622 DPYSL2Q16555 572 aa-1.32□□□□□ -2.62
RNU6-540P-201ENST00000384622 QRICH1Q2TAL8 776 aa-1.32□□□□□ -2.62
RNU6-540P-201ENST00000384622 ARL13BQ3SXY8 428 aa-1.32□□□□□ -2.62
RNU6-540P-201ENST00000384622 MDH1BQ5I0G3 518 aa-1.32□□□□□ -2.62
RNU6-540P-201ENST00000384622 TEX35Q5T0J7 233 aa-1.32□□□□□ -2.62
RNU6-540P-201ENST00000384622 GCNT6Q5T4J0 391 aa-1.32□□□□□ -2.62
RNU6-540P-201ENST00000384622 ZNF684Q5T5D7 378 aa-1.32□□□□□ -2.62
RNU6-540P-201ENST00000384622 N4BP2L1Q5TBK1 243 aaPredicted RBP-1.32□□□□□ -2.62
RNU6-540P-201ENST00000384622 LRRC38Q5VT99 294 aa-1.32□□□□□ -2.62
RNU6-540P-201ENST00000384622 SUSD4Q5VX71 490 aa-1.32□□□□□ -2.62
RNU6-540P-201ENST00000384622 LIPJQ5W064 366 aa-1.32□□□□□ -2.62
RNU6-540P-201ENST00000384622 KCTD11Q693B1 232 aa-1.32□□□□□ -2.62
RNU6-540P-201ENST00000384622 TXNRD3NBQ6F5E7 133 aa-1.32□□□□□ -2.62
RNU6-540P-201ENST00000384622 UFSP1Q6NVU6 142 aa-1.32□□□□□ -2.62
RNU6-540P-201ENST00000384622 SLC27A4Q6P1M0 643 aa-1.32□□□□□ -2.62
RNU6-540P-201ENST00000384622 TATDN1Q6P1N9 297 aa-1.32□□□□□ -2.62
RNU6-540P-201ENST00000384622 SPAG11AQ6PDA7 123 aa-1.32□□□□□ -2.62
RNU6-540P-201ENST00000384622 KRTAP26-1Q6PEX3 210 aa-1.32□□□□□ -2.62
RNU6-540P-201ENST00000384622 C16orf87Q6PH81 154 aa-1.32□□□□□ -2.62
RNU6-540P-201ENST00000384622 PATE2Q6UY27 113 aa-1.32□□□□□ -2.62
RNU6-540P-201ENST00000384622 SOSTDC1Q6X4U4 206 aa-1.32□□□□□ -2.62
RNU6-540P-201ENST00000384622 RAB11FIP2Q7L804 512 aa-1.32□□□□□ -2.62
RNU6-540P-201ENST00000384622 CHST3Q7LGC8 479 aa-1.32□□□□□ -2.62
RNU6-540P-201ENST00000384622 VMO1Q7Z5L0 202 aa-1.32□□□□□ -2.62
RNU6-540P-201ENST00000384622 ARL17AQ8IVW1 177 aa-1.32□□□□□ -2.62
RNU6-540P-201ENST00000384622 CLDN19Q8N6F1 224 aa-1.32□□□□□ -2.62
RNU6-540P-201ENST00000384622 IRGQQ8WZA9 623 aa-1.32□□□□□ -2.62
RNU6-540P-201ENST00000384622 ESR2Q92731 530 aa-1.32□□□□□ -2.62
RNU6-540P-201ENST00000384622 C3orf49Q96BT1 292 aa-1.32□□□□□ -2.62
RNU6-540P-201ENST00000384622 SLC41A3Q96GZ6 507 aa-1.32□□□□□ -2.62
RNU6-540P-201ENST00000384622 RAB3IPQ96QF0 476 aaPredicted RBP-1.32□□□□□ -2.62
RNU6-540P-201ENST00000384622 ZBTB18Q99592 522 aa-1.32□□□□□ -2.62
RNU6-540P-201ENST00000384622 ASPSCR1Q9BZE9 553 aa-1.32□□□□□ -2.62
RNU6-540P-201ENST00000384622 TPK1Q9H3S4 243 aa-1.32□□□□□ -2.62
RNU6-540P-201ENST00000384622 ECT2Q9H8V3 914 aa-1.32□□□□□ -2.62
RNU6-540P-201ENST00000384622 SLC28A3Q9HAS3 691 aa-1.32□□□□□ -2.62
RNU6-540P-201ENST00000384622 PRSS16Q9NQE7 514 aa-1.32□□□□□ -2.62
RNU6-540P-201ENST00000384622 PARP11Q9NR21 331 aa-1.32□□□□□ -2.62
RNU6-540P-201ENST00000384622 PCDHB16Q9NRJ7 776 aa-1.32□□□□□ -2.62
RNU6-540P-201ENST00000384622 ZNF701Q9NV72 531 aaPredicted RBP-1.32□□□□□ -2.62
RNU6-540P-201ENST00000384622 SETD4Q9NVD3 440 aa-1.32□□□□□ -2.62
RNU6-540P-201ENST00000384622 IL1RAPL1Q9NZN1 696 aa-1.32□□□□□ -2.62
RNU6-540P-201ENST00000384622 SENP1Q9P0U3 644 aa-1.32□□□□□ -2.62
RNU6-540P-201ENST00000384622 COPG2Q9UBF2 871 aa-1.32□□□□□ -2.62
RNU6-540P-201ENST00000384622 IP6K2Q9UHH9 426 aa-1.32□□□□□ -2.62
RNU6-540P-201ENST00000384622 CNOT7Q9UIV1 285 aaKnown RBP-1.32□□□□□ -2.62
RNU6-540P-201ENST00000384622 ANGPTL2Q9UKU9 493 aa-1.32□□□□□ -2.62
RNU6-540P-201ENST00000384622 C19orf53Q9UNZ5 99 aaPredicted RBP-1.32□□□□□ -2.62
RNU6-540P-201ENST00000384622 CORO2BQ9UQ03 480 aa-1.32□□□□□ -2.62
RNU6-540P-201ENST00000384622 MRPL42Q9Y6G3 142 aaKnown RBP-1.32□□□□□ -2.62
RNU6-540P-201ENST00000384622 S4R3F8 94 aa-1.32□□□□□ -2.62
RNU6-540P-201ENST00000384622 SCAF11Q99590 1463 aaKnown RBP-1.32□□□□□ -2.62
RNU6-540P-201ENST00000384622 ZNF638Q14966 1978 aaKnown RBP-1.32□□□□□ -2.62
RNU6-540P-201ENST00000384622 CRB1P82279 1406 aa-1.32□□□□□ -2.62
RNU6-540P-201ENST00000384622 PPIP5K1Q6PFW1 1433 aa-1.32□□□□□ -2.62
RNU6-540P-201ENST00000384622 ADAMTSL3P82987 1691 aa-1.32□□□□□ -2.62
RNU6-540P-201ENST00000384622 UTYO14607 1347 aa-1.33□□□□□ -2.62
RNU6-540P-201ENST00000384622 STRCP1A6NGW2 1772 aa-1.33□□□□□ -2.62
RNU6-540P-201ENST00000384622 LOC110117498A0A087WWA1 95 aa-1.33□□□□□ -2.62
RNU6-540P-201ENST00000384622 A0A1W2PPM0 123 aa-1.33□□□□□ -2.62
RNU6-540P-201ENST00000384622 TLDC2A0PJX2 215 aa-1.33□□□□□ -2.62
RNU6-540P-201ENST00000384622 C2orf81A6NN90 581 aa-1.33□□□□□ -2.62
RNU6-540P-201ENST00000384622 LOC110117498-PIK3R3F6TDL0 507 aa-1.33□□□□□ -2.62
RNU6-540P-201ENST00000384622 K7EM74 188 aa-1.33□□□□□ -2.62
RNU6-540P-201ENST00000384622 APOL1O14791 398 aa-1.33□□□□□ -2.62
RNU6-540P-201ENST00000384622 B4GALT5O43286 388 aa-1.33□□□□□ -2.62
RNU6-540P-201ENST00000384622 TNFSF14O43557 240 aa-1.33□□□□□ -2.62
RNU6-540P-201ENST00000384622 PLPP2O43688 288 aa-1.33□□□□□ -2.62
RNU6-540P-201ENST00000384622 TRAF3IP2O43734 574 aaPredicted RBP-1.33□□□□□ -2.62
RNU6-540P-201ENST00000384622 OR10H2O60403 315 aa-1.33□□□□□ -2.62
RNU6-540P-201ENST00000384622 EIF4E2O60573 245 aaKnown RBP-1.33□□□□□ -2.62
RNU6-540P-201ENST00000384622 NOL3O60936 208 aaKnown RBP-1.33□□□□□ -2.62
RNU6-540P-201ENST00000384622 PGM3O95394 542 aa-1.33□□□□□ -2.62
RNU6-540P-201ENST00000384622 CTDNEP1O95476 244 aa-1.33□□□□□ -2.62
RNU6-540P-201ENST00000384622 SLC25A27O95847 323 aa-1.33□□□□□ -2.62
RNU6-540P-201ENST00000384622 SFTPBP07988 381 aa-1.33□□□□□ -2.62
RNU6-540P-201ENST00000384622 SERPINF2P08697 491 aa-1.33□□□□□ -2.62
RNU6-540P-201ENST00000384622 MMP10P09238 476 aa-1.33□□□□□ -2.62
RNU6-540P-201ENST00000384622 CT47B1P0C2W7 299 aaPredicted RBP-1.33□□□□□ -2.62
RNU6-540P-201ENST00000384622 SKILP12757 684 aa-1.33□□□□□ -2.62
RNU6-540P-201ENST00000384622 RARGP13631 454 aa-1.33□□□□□ -2.62
RNU6-540P-201ENST00000384622 PAX3P23760 479 aa-1.33□□□□□ -2.62
RNU6-540P-201ENST00000384622 CSNK1DP48730 415 aa-1.33□□□□□ -2.62
RNU6-540P-201ENST00000384622 SLC11A1P49279 550 aa-1.33□□□□□ -2.62
RNU6-540P-201ENST00000384622 PRIM2P49643 509 aa-1.33□□□□□ -2.62
RNU6-540P-201ENST00000384622 DNA2P51530 1060 aa-1.33□□□□□ -2.62
RNU6-540P-201ENST00000384622 AKR1C2P52895 323 aa-1.33□□□□□ -2.62
RNU6-540P-201ENST00000384622 CTBP2P56545 445 aa-1.33□□□□□ -2.62
RNU6-540P-201ENST00000384622 AKR1C1Q04828 323 aa-1.33□□□□□ -2.62
RNU6-540P-201ENST00000384622 RAB40BQ12829 278 aa-1.33□□□□□ -2.62
RNU6-540P-201ENST00000384622 C1orf61Q13536 156 aa-1.33□□□□□ -2.62
RNU6-540P-201ENST00000384622 BTG3Q14201 252 aaPredicted RBP-1.33□□□□□ -2.62
RNU6-540P-201ENST00000384622 HLTFQ14527 1009 aaKnown RBP eCLIP-1.33□□□□□ -2.62
RNU6-540P-201ENST00000384622 ZNF273Q14593 569 aa-1.33□□□□□ -2.62
RNU6-540P-201ENST00000384622 PPP1R3AQ16821 1122 aa-1.33□□□□□ -2.62
RNU6-540P-201ENST00000384622 ECSCRQ19T08 205 aa-1.33□□□□□ -2.62
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms