RNA–Protein interactions for RNA: ENST00000360718.5

SQSTM1-201, Transcript of sequestosome 1, humanhuman

TSL 1 (best) BASIC

Gene SQSTM1, Length 2,253 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-201ENST00000360718 CCDC81Q6ZN84 652 aa12.41□□□□□ -0.42
SQSTM1-201ENST00000360718 ZNF551Q7Z340 670 aaPredicted RBP12.41□□□□□ -0.42
SQSTM1-201ENST00000360718 MMP21Q8N119 569 aa12.41□□□□□ -0.42
SQSTM1-201ENST00000360718 TM4SF19Q96DZ7 209 aa12.41□□□□□ -0.42
SQSTM1-201ENST00000360718 ZDHHC12Q96GR4 267 aa12.41□□□□□ -0.42
SQSTM1-201ENST00000360718 HSH2DQ96JZ2 352 aa12.41□□□□□ -0.42
SQSTM1-201ENST00000360718 BARD1Q99728 777 aaKnown RBP12.41□□□□□ -0.42
SQSTM1-201ENST00000360718 ROGDIQ9GZN7 287 aa12.41□□□□□ -0.42
SQSTM1-201ENST00000360718 GAREM1Q9H706 876 aa12.41□□□□□ -0.42
SQSTM1-201ENST00000360718 FAM60AQ9NP50 221 aa12.41□□□□□ -0.42
SQSTM1-201ENST00000360718 FBXO8Q9NRD0 319 aa12.41□□□□□ -0.42
SQSTM1-201ENST00000360718 ITGB1BP2Q9UKP3 347 aa12.41□□□□□ -0.42
SQSTM1-201ENST00000360718 SPTBP11277 2137 aa12.41□□□□□ -0.42
SQSTM1-201ENST00000360718 LOC105369274A0A096LPK9 316 aa12.41□□□□□ -0.42
SQSTM1-201ENST00000360718 LOC102723532A0A0G2JNH3 316 aa12.41□□□□□ -0.42
SQSTM1-201ENST00000360718 P2RX6O15547 441 aa12.41□□□□□ -0.42
SQSTM1-201ENST00000360718 ZNF10P21506 573 aaPredicted RBP12.41□□□□□ -0.42
SQSTM1-201ENST00000360718 HIST1H1TP22492 207 aaPredicted RBP12.41□□□□□ -0.42
SQSTM1-201ENST00000360718 MAP2K4P45985 399 aa12.41□□□□□ -0.42
SQSTM1-201ENST00000360718 GPR3P46089 330 aa12.41□□□□□ -0.42
SQSTM1-201ENST00000360718 GFERP55789 205 aa12.41□□□□□ -0.42
SQSTM1-201ENST00000360718 MC1RQ01726 317 aa12.41□□□□□ -0.42
SQSTM1-201ENST00000360718 SLC14A1Q13336 389 aa12.41□□□□□ -0.42
SQSTM1-201ENST00000360718 OXA1LQ15070 435 aa12.41□□□□□ -0.42
SQSTM1-201ENST00000360718 TRIM61Q5EBN2 209 aa12.41□□□□□ -0.42
SQSTM1-201ENST00000360718 MANEAQ5SRI9 462 aa12.41□□□□□ -0.42
SQSTM1-201ENST00000360718 RNF44Q7L0R7 432 aa12.41□□□□□ -0.42
SQSTM1-201ENST00000360718 OR4N4Q8N0Y3 316 aa12.41□□□□□ -0.42
SQSTM1-201ENST00000360718 C19orf47Q8N9M1 422 aaKnown RBP12.41□□□□□ -0.42
SQSTM1-201ENST00000360718 PHF10Q8WUB8 498 aaKnown RBP12.41□□□□□ -0.42
SQSTM1-201ENST00000360718 FCGR1BQ92637 280 aa12.41□□□□□ -0.42
SQSTM1-201ENST00000360718 TM4SF18Q96CE8 201 aa12.41□□□□□ -0.42
SQSTM1-201ENST00000360718 TEFMQ96QE5 360 aaKnown RBP12.41□□□□□ -0.42
SQSTM1-201ENST00000360718 ALPK1Q96QP1 1244 aa12.41□□□□□ -0.42
SQSTM1-201ENST00000360718 EPYCQ99645 322 aa12.41□□□□□ -0.42
SQSTM1-201ENST00000360718 FAIM2Q9BWQ8 316 aa12.41□□□□□ -0.42
SQSTM1-201ENST00000360718 ACOT13Q9NPJ3 140 aa12.41□□□□□ -0.42
SQSTM1-201ENST00000360718 THUMPD1Q9NXG2 353 aaKnown RBP12.41□□□□□ -0.42
SQSTM1-201ENST00000360718 SLC6A14Q9UN76 642 aa12.41□□□□□ -0.42
SQSTM1-201ENST00000360718 PCDHGB3Q9Y5G1 929 aa12.41□□□□□ -0.42
SQSTM1-201ENST00000360718 R4GN57 208 aa12.41□□□□□ -0.42
SQSTM1-201ENST00000360718 A0A0A6YYD5 115 aa12.4□□□□□ -0.42
SQSTM1-201ENST00000360718 LY6G6EA0A0G2JKS1 128 aa12.4□□□□□ -0.42
SQSTM1-201ENST00000360718 H0YGG7 62 aa12.4□□□□□ -0.42
SQSTM1-201ENST00000360718 SCN2BO60939 215 aa12.4□□□□□ -0.42
SQSTM1-201ENST00000360718 CER1O95813 267 aa12.4□□□□□ -0.42
SQSTM1-201ENST00000360718 MT-ND2P03891 347 aa12.4□□□□□ -0.42
SQSTM1-201ENST00000360718 EIF2S1P05198 315 aaKnown RBP12.4□□□□□ -0.42
SQSTM1-201ENST00000360718 CTSBP07858 339 aa12.4□□□□□ -0.42
SQSTM1-201ENST00000360718 SYPP08247 313 aa12.4□□□□□ -0.42
SQSTM1-201ENST00000360718 EFNA1P20827 205 aaPredicted RBP12.4□□□□□ -0.42
SQSTM1-201ENST00000360718 ALDH9A1P49189 494 aa12.4□□□□□ -0.42
SQSTM1-201ENST00000360718 WNT3P56703 355 aa12.4□□□□□ -0.42
SQSTM1-201ENST00000360718 OR1D5P58170 312 aa12.4□□□□□ -0.42
SQSTM1-201ENST00000360718 RAB8AP61006 207 aa12.4□□□□□ -0.42
SQSTM1-201ENST00000360718 ARF3P61204 181 aaPredicted RBP12.4□□□□□ -0.42
SQSTM1-201ENST00000360718 VLDLRP98155 873 aa12.4□□□□□ -0.42
SQSTM1-201ENST00000360718 NPRL3Q12980 569 aa12.4□□□□□ -0.42
SQSTM1-201ENST00000360718 FADDQ13158 208 aa12.4□□□□□ -0.42
SQSTM1-201ENST00000360718 PDE7AQ13946 482 aa12.4□□□□□ -0.42
SQSTM1-201ENST00000360718 LAPTM4AQ15012 233 aa12.4□□□□□ -0.42
SQSTM1-201ENST00000360718 SUZ12Q15022 739 aaKnown RBP12.4□□□□□ -0.42
SQSTM1-201ENST00000360718 TCEAL6Q6IPX3 200 aa12.4□□□□□ -0.42
SQSTM1-201ENST00000360718 FAHD1Q6P587 224 aa12.4□□□□□ -0.42
SQSTM1-201ENST00000360718 ZNF793Q6ZN11 406 aa12.4□□□□□ -0.42
SQSTM1-201ENST00000360718 FAM92BQ6ZTR7 304 aa12.4□□□□□ -0.42
SQSTM1-201ENST00000360718 ABHD13Q7L211 337 aa12.4□□□□□ -0.42
SQSTM1-201ENST00000360718 PTOV1Q86YD1 416 aa12.4□□□□□ -0.42
SQSTM1-201ENST00000360718 NATD1Q8N6N6 113 aa12.4□□□□□ -0.42
SQSTM1-201ENST00000360718 ACOT4Q8N9L9 421 aa12.4□□□□□ -0.42
SQSTM1-201ENST00000360718 KCT2Q8NC54 265 aa12.4□□□□□ -0.42
SQSTM1-201ENST00000360718 TCEAL3Q969E4 200 aa12.4□□□□□ -0.42
SQSTM1-201ENST00000360718 TCTN2Q96GX1 697 aa12.4□□□□□ -0.42
SQSTM1-201ENST00000360718 CD180Q99467 661 aa12.4□□□□□ -0.42
SQSTM1-201ENST00000360718 PITX2Q99697 317 aa12.4□□□□□ -0.42
SQSTM1-201ENST00000360718 MAP3K3Q99759 626 aa12.4□□□□□ -0.42
SQSTM1-201ENST00000360718 RAB33BQ9H082 229 aa12.4□□□□□ -0.42
SQSTM1-201ENST00000360718 TPT1P8Q9HAU6 139 aa12.4□□□□□ -0.42
SQSTM1-201ENST00000360718 PRDM7Q9NQW5 492 aa12.4□□□□□ -0.42
SQSTM1-201ENST00000360718 BTNL2Q9UIR0 455 aa12.4□□□□□ -0.42
SQSTM1-201ENST00000360718 U3KQA8 63 aa12.4□□□□□ -0.42
SQSTM1-201ENST00000360718 TLCD2A6NGC4 264 aa12.4□□□□□ -0.42
SQSTM1-201ENST00000360718 SLC9B1P1A6NJY1 282 aa12.4□□□□□ -0.42
SQSTM1-201ENST00000360718 CLDN24A6NM45 220 aa12.4□□□□□ -0.42
SQSTM1-201ENST00000360718 RNASET2O00584 256 aaKnown RBP12.4□□□□□ -0.42
SQSTM1-201ENST00000360718 SUV39H1O43463 412 aa12.4□□□□□ -0.42
SQSTM1-201ENST00000360718 DUX1O43812 170 aa12.4□□□□□ -0.42
SQSTM1-201ENST00000360718 NTRK1P04629 796 aa12.4□□□□□ -0.42
SQSTM1-201ENST00000360718 DRD2P14416 443 aa12.4□□□□□ -0.42
SQSTM1-201ENST00000360718 DDCP20711 480 aa12.4□□□□□ -0.42
SQSTM1-201ENST00000360718 ATP5A1P25705 553 aaKnown RBP12.4□□□□□ -0.42
SQSTM1-201ENST00000360718 RPP38P78345 283 aaKnown RBP12.4□□□□□ -0.42
SQSTM1-201ENST00000360718 CFHR1Q03591 330 aa12.4□□□□□ -0.42
SQSTM1-201ENST00000360718 SLAMF1Q13291 335 aa12.4□□□□□ -0.42
SQSTM1-201ENST00000360718 PRSS53Q2L4Q9 553 aa12.4□□□□□ -0.42
SQSTM1-201ENST00000360718 SLC23A3Q6PIS1 610 aa12.4□□□□□ -0.42
SQSTM1-201ENST00000360718 P3H2Q8IVL5 708 aa12.4□□□□□ -0.42
SQSTM1-201ENST00000360718 OR6C4Q8NGE1 309 aa12.4□□□□□ -0.42
SQSTM1-201ENST00000360718 OR6Q1Q8NGQ2 317 aa12.4□□□□□ -0.42
SQSTM1-201ENST00000360718 OR8K5Q8NH50 307 aa12.4□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms