RNA–Protein interactions for RNA: ENST00000354504.7

VPS54-202, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS54, Length 3,594 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-202ENST00000354504 SDK2Q58EX2 2172 aa2.17□□□□□ -2.06
VPS54-202ENST00000354504 DOCK10Q96BY6 2186 aa2.17□□□□□ -2.06
VPS54-202ENST00000354504 KIF26BQ2KJY2 2108 aa2.17□□□□□ -2.06
VPS54-202ENST00000354504 SPTBN2O15020 2390 aa2.17□□□□□ -2.06
VPS54-202ENST00000354504 EDDM13A0A1B0GTR0 161 aa2.16□□□□□ -2.06
VPS54-202ENST00000354504 LRIT2A6NDA9 550 aa2.16□□□□□ -2.06
VPS54-202ENST00000354504 EIF4E1BA6NMX2 242 aaKnown RBP2.16□□□□□ -2.06
VPS54-202ENST00000354504 PRSS47A8MTI9 375 aa2.16□□□□□ -2.06
VPS54-202ENST00000354504 ISM1B1AKI9 464 aa2.16□□□□□ -2.06
VPS54-202ENST00000354504 SUPT3HB4E1H0 165 aa2.16□□□□□ -2.06
VPS54-202ENST00000354504 NPIPB9F8W1W9 429 aa2.16□□□□□ -2.06
VPS54-202ENST00000354504 H3BMQ9 156 aa2.16□□□□□ -2.06
VPS54-202ENST00000354504 ZNF701M0R085 212 aaPredicted RBP2.16□□□□□ -2.06
VPS54-202ENST00000354504 PRRG1O14668 218 aa2.16□□□□□ -2.06
VPS54-202ENST00000354504 EI24O14681 340 aa2.16□□□□□ -2.06
VPS54-202ENST00000354504 PRAMEF10O60809 474 aa2.16□□□□□ -2.06
VPS54-202ENST00000354504 CTSVO60911 334 aa2.16□□□□□ -2.06
VPS54-202ENST00000354504 MITFO75030 526 aaPredicted RBP2.16□□□□□ -2.06
VPS54-202ENST00000354504 VPS26AO75436 327 aa2.16□□□□□ -2.06
VPS54-202ENST00000354504 SUPT3HO75486 399 aa2.16□□□□□ -2.06
VPS54-202ENST00000354504 JRKO75564 520 aa2.16□□□□□ -2.06
VPS54-202ENST00000354504 CREG1O75629 220 aa2.16□□□□□ -2.06
VPS54-202ENST00000354504 STK16O75716 305 aa2.16□□□□□ -2.06
VPS54-202ENST00000354504 MFN2O95140 757 aa2.16□□□□□ -2.06
VPS54-202ENST00000354504 CLDN9O95484 217 aa2.16□□□□□ -2.06
VPS54-202ENST00000354504 OTCP00480 354 aa2.16□□□□□ -2.06
VPS54-202ENST00000354504 IL6P05231 212 aa2.16□□□□□ -2.06
VPS54-202ENST00000354504 GPIP06744 558 aa2.16□□□□□ -2.06
VPS54-202ENST00000354504 RPSAP08865 295 aaKnown RBP2.16□□□□□ -2.06
VPS54-202ENST00000354504 RAP2AP10114 183 aa2.16□□□□□ -2.06
VPS54-202ENST00000354504 PSKH1P11801 424 aa2.16□□□□□ -2.06
VPS54-202ENST00000354504 ENO3P13929 434 aaPredicted RBP2.16□□□□□ -2.06
VPS54-202ENST00000354504 HSD3B1P14060 373 aa2.16□□□□□ -2.06
VPS54-202ENST00000354504 DESP17661 470 aa2.16□□□□□ -2.06
VPS54-202ENST00000354504 DGKAP23743 735 aa2.16□□□□□ -2.06
VPS54-202ENST00000354504 MST1P26927 711 aa2.16□□□□□ -2.06
VPS54-202ENST00000354504 ELK4P28324 431 aa2.16□□□□□ -2.06
VPS54-202ENST00000354504 SERPINA4P29622 427 aa2.16□□□□□ -2.06
VPS54-202ENST00000354504 PCGF2P35227 344 aa2.16□□□□□ -2.06
VPS54-202ENST00000354504 TGFBR1P36897 503 aa2.16□□□□□ -2.06
VPS54-202ENST00000354504 RGS19P49795 217 aa2.16□□□□□ -2.06
VPS54-202ENST00000354504 GPR143P51810 404 aa2.16□□□□□ -2.06
VPS54-202ENST00000354504 ZNF134P52741 427 aa2.16□□□□□ -2.06
VPS54-202ENST00000354504 ARSFP54793 590 aa2.16□□□□□ -2.06
VPS54-202ENST00000354504 UCP3P55916 312 aa2.16□□□□□ -2.06
VPS54-202ENST00000354504 DMWDQ09019 674 aa2.16□□□□□ -2.06
VPS54-202ENST00000354504 ASPHQ12797 758 aa2.16□□□□□ -2.06
VPS54-202ENST00000354504 MERTKQ12866 999 aa2.16□□□□□ -2.06
VPS54-202ENST00000354504 BNIP2Q12982 314 aa2.16□□□□□ -2.06
VPS54-202ENST00000354504 EIF2B5Q13144 721 aaKnown RBP2.16□□□□□ -2.06
VPS54-202ENST00000354504 SLC13A2Q13183 592 aa2.16□□□□□ -2.06
VPS54-202ENST00000354504 CDH18Q13634 790 aa2.16□□□□□ -2.06
VPS54-202ENST00000354504 VEZF1Q14119 521 aa2.16□□□□□ -2.06
VPS54-202ENST00000354504 ELAVL3Q14576 367 aaKnown RBP2.16□□□□□ -2.06
VPS54-202ENST00000354504 TAF12Q16514 161 aa2.16□□□□□ -2.06
VPS54-202ENST00000354504 GAGE13Q4V321 117 aa2.16□□□□□ -2.06
VPS54-202ENST00000354504 ZRANB3Q5FWF4 1079 aa2.16□□□□□ -2.06
VPS54-202ENST00000354504 SAMD4BQ5PRF9 694 aaKnown RBP2.16□□□□□ -2.06
VPS54-202ENST00000354504 SLC25A30Q5SVS4 291 aa2.16□□□□□ -2.06
VPS54-202ENST00000354504 CHCHD2P9Q5T1J5 151 aaPredicted RBP2.16□□□□□ -2.06
VPS54-202ENST00000354504 C1orf146Q5VVC0 180 aa2.16□□□□□ -2.06
VPS54-202ENST00000354504 FRG2Q64ET8 278 aa2.16□□□□□ -2.06
VPS54-202ENST00000354504 DUS1LQ6P1R4 473 aaKnown RBP2.16□□□□□ -2.06
VPS54-202ENST00000354504 FBXO42Q6P3S6 717 aa2.16□□□□□ -2.06
VPS54-202ENST00000354504 AGTRAPQ6RW13 159 aa2.16□□□□□ -2.06
VPS54-202ENST00000354504 UNC5DQ6UXZ4 953 aa2.16□□□□□ -2.06
VPS54-202ENST00000354504 CEACAM20Q6UY09 585 aa2.16□□□□□ -2.06
VPS54-202ENST00000354504 WDR88Q6ZMY6 472 aa2.16□□□□□ -2.06
VPS54-202ENST00000354504 RNF44Q7L0R7 432 aa2.16□□□□□ -2.06
VPS54-202ENST00000354504 VTCN1Q7Z7D3 282 aa2.16□□□□□ -2.06
VPS54-202ENST00000354504 SLC9B2Q86UD5 537 aa2.16□□□□□ -2.06
VPS54-202ENST00000354504 GPR180Q86V85 440 aa2.16□□□□□ -2.06
VPS54-202ENST00000354504 TRIM69Q86WT6 500 aa2.16□□□□□ -2.06
VPS54-202ENST00000354504 CCNYL1Q8N7R7 359 aa2.16□□□□□ -2.06
VPS54-202ENST00000354504 CCL4L1Q8NHW4 92 aa2.16□□□□□ -2.06
VPS54-202ENST00000354504 DNAJB14Q8TBM8 379 aa2.16□□□□□ -2.06
VPS54-202ENST00000354504 NT5CQ8TCD5 201 aa2.16□□□□□ -2.06
VPS54-202ENST00000354504 C16orf78Q8WTQ4 265 aa2.16□□□□□ -2.06
VPS54-202ENST00000354504 CYGBQ8WWM9 190 aa2.16□□□□□ -2.06
VPS54-202ENST00000354504 TMBIM1Q969X1 311 aa2.16□□□□□ -2.06
VPS54-202ENST00000354504 CNRIP1Q96F85 164 aaPredicted RBP2.16□□□□□ -2.06
VPS54-202ENST00000354504 RSRC1Q96IZ7 334 aaKnown RBP2.16□□□□□ -2.06
VPS54-202ENST00000354504 COG8Q96MW5 612 aa2.16□□□□□ -2.06
VPS54-202ENST00000354504 FRG2BQ96QU4 278 aa2.16□□□□□ -2.06
VPS54-202ENST00000354504 YME1L1Q96TA2 773 aa2.16□□□□□ -2.06
VPS54-202ENST00000354504 PRSS27Q9BQR3 290 aa2.16□□□□□ -2.06
VPS54-202ENST00000354504 MRI1Q9BV20 369 aa2.16□□□□□ -2.06
VPS54-202ENST00000354504 MRPL1Q9BYD6 325 aaKnown RBP2.16□□□□□ -2.06
VPS54-202ENST00000354504 DPH1Q9BZG8 443 aa2.16□□□□□ -2.06
VPS54-202ENST00000354504 NACA2Q9H009 215 aa2.16□□□□□ -2.06
VPS54-202ENST00000354504 LMAN2LQ9H0V9 348 aa2.16□□□□□ -2.06
VPS54-202ENST00000354504 MEGF9Q9H1U4 602 aa2.16□□□□□ -2.06
VPS54-202ENST00000354504 OBP2BQ9NPH6 170 aa2.16□□□□□ -2.06
VPS54-202ENST00000354504 MRPL40Q9NQ50 206 aaKnown RBP2.16□□□□□ -2.06
VPS54-202ENST00000354504 FSCN3Q9NQT6 498 aa2.16□□□□□ -2.06
VPS54-202ENST00000354504 C1orf109Q9NX04 203 aa2.16□□□□□ -2.06
VPS54-202ENST00000354504 TUBA8Q9NY65 449 aaPredicted RBP2.16□□□□□ -2.06
VPS54-202ENST00000354504 DONSONQ9NYP3 566 aa2.16□□□□□ -2.06
VPS54-202ENST00000354504 AASSQ9UDR5 926 aa2.16□□□□□ -2.06
VPS54-202ENST00000354504 TESQ9UGI8 421 aaKnown RBP2.16□□□□□ -2.06
Retrieved 100 of 20,778 RNA–protein pairs in 67.9 ms