RNA–Protein interactions for RNA: ENST00000354098.7

SHMT1-203, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best) BASIC

Gene SHMT1, Length 1,656 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-203ENST00000354098 IL6P05231 212 aa20.55■□□□□ 0.88
SHMT1-203ENST00000354098 UBAP2LQ14157 1087 aaKnown RBP20.55■□□□□ 0.88
SHMT1-203ENST00000354098 EBPQ15125 230 aaKnown RBP20.55■□□□□ 0.88
SHMT1-203ENST00000354098 CRB2Q5IJ48 1285 aa20.55■□□□□ 0.88
SHMT1-203ENST00000354098 ACER2Q5QJU3 275 aa20.55■□□□□ 0.88
SHMT1-203ENST00000354098 ANXA8L1Q5VT79 327 aa20.55■□□□□ 0.88
SHMT1-203ENST00000354098 BLOC1S3Q6QNY0 202 aa20.55■□□□□ 0.88
SHMT1-203ENST00000354098 PIGWQ7Z7B1 504 aa20.55■□□□□ 0.88
SHMT1-203ENST00000354098 OR2L13Q8N349 312 aa20.55■□□□□ 0.88
SHMT1-203ENST00000354098 CPSF7Q8N684 471 aaKnown RBP20.55■□□□□ 0.88
SHMT1-203ENST00000354098 SLC5A8Q8N695 610 aa20.55■□□□□ 0.88
SHMT1-203ENST00000354098 OR8K3Q8NH51 312 aa20.55■□□□□ 0.88
SHMT1-203ENST00000354098 CCT8L2Q96SF2 557 aa20.55■□□□□ 0.88
SHMT1-203ENST00000354098 SMAD5Q99717 465 aaKnown RBP20.55■□□□□ 0.88
SHMT1-203ENST00000354098 SAR1AQ9NR31 198 aa20.55■□□□□ 0.88
SHMT1-203ENST00000354098 SDAD1Q9NVU7 687 aaKnown RBP eCLIP20.55■□□□□ 0.88
SHMT1-203ENST00000354098 FAM120CQ9NX05 1096 aaKnown RBP20.55■□□□□ 0.88
SHMT1-203ENST00000354098 C19orf53Q9UNZ5 99 aaPredicted RBP20.55■□□□□ 0.88
SHMT1-203ENST00000354098 LHX6Q9UPM6 363 aa20.55■□□□□ 0.88
SHMT1-203ENST00000354098 SNX8Q9Y5X2 465 aa20.55■□□□□ 0.88
SHMT1-203ENST00000354098 A0A087WV62 115 aa20.54■□□□□ 0.88
SHMT1-203ENST00000354098 SLITRK5O94991 958 aa20.54■□□□□ 0.88
SHMT1-203ENST00000354098 CPSF4O95639 269 aaKnown RBP20.54■□□□□ 0.88
SHMT1-203ENST00000354098 IRX1P78414 480 aaPredicted RBP20.54■□□□□ 0.88
SHMT1-203ENST00000354098 TIGD2Q4W5G0 525 aa20.54■□□□□ 0.88
SHMT1-203ENST00000354098 ISLR2Q6UXK2 745 aa20.54■□□□□ 0.88
SHMT1-203ENST00000354098 VPS37AQ8NEZ2 397 aa20.54■□□□□ 0.88
SHMT1-203ENST00000354098 PSMA8Q8TAA3 256 aa20.54■□□□□ 0.88
SHMT1-203ENST00000354098 ERP27Q96DN0 273 aa20.54■□□□□ 0.88
SHMT1-203ENST00000354098 GAL3ST4Q96RP7 486 aa20.54■□□□□ 0.88
SHMT1-203ENST00000354098 WWTR1Q9GZV5 400 aa20.54■□□□□ 0.88
SHMT1-203ENST00000354098 DDX18Q9NVP1 670 aaKnown RBP20.54■□□□□ 0.88
SHMT1-203ENST00000354098 STMN3Q9NZ72 180 aa20.54■□□□□ 0.88
SHMT1-203ENST00000354098 MYOTQ9UBF9 498 aa20.54■□□□□ 0.88
SHMT1-203ENST00000354098 OR6C76A6NM76 312 aa20.54■□□□□ 0.88
SHMT1-203ENST00000354098 WWP2O00308 870 aa20.54■□□□□ 0.88
SHMT1-203ENST00000354098 PRAMEF2O60811 474 aa20.54■□□□□ 0.88
SHMT1-203ENST00000354098 MLF1P58340 268 aa20.54■□□□□ 0.88
SHMT1-203ENST00000354098 RCAN2Q14206 197 aa20.54■□□□□ 0.88
SHMT1-203ENST00000354098 SLC29A4Q7RTT9 530 aa20.54■□□□□ 0.88
SHMT1-203ENST00000354098 ARMC10Q8N2F6 343 aa20.54■□□□□ 0.88
SHMT1-203ENST00000354098 OR5L2Q8NGL0 311 aa20.54■□□□□ 0.88
SHMT1-203ENST00000354098 OR4A15Q8NGL6 344 aa20.54■□□□□ 0.88
SHMT1-203ENST00000354098 ZNF354BQ96LW1 612 aa20.54■□□□□ 0.88
SHMT1-203ENST00000354098 INPP5KQ9BT40 448 aa20.54■□□□□ 0.88
SHMT1-203ENST00000354098 NMUR2Q9GZQ4 415 aa20.54■□□□□ 0.88
SHMT1-203ENST00000354098 SLC52A3Q9NQ40 469 aa20.54■□□□□ 0.88
SHMT1-203ENST00000354098 TAS2R9Q9NYW1 312 aa20.54■□□□□ 0.88
SHMT1-203ENST00000354098 KMT2BQ9UMN6 2715 aaPredicted RBP20.54■□□□□ 0.88
SHMT1-203ENST00000354098 C2orf92A0A1B0GVN3 265 aa20.53■□□□□ 0.88
SHMT1-203ENST00000354098 ERVH48-1M5A8F1 160 aa20.53■□□□□ 0.88
SHMT1-203ENST00000354098 NR5A2O00482 541 aa20.53■□□□□ 0.88
SHMT1-203ENST00000354098 F10P00742 488 aa20.53■□□□□ 0.88
SHMT1-203ENST00000354098 PRKAG1P54619 331 aa20.53■□□□□ 0.88
SHMT1-203ENST00000354098 MEP1AQ16819 746 aa20.53■□□□□ 0.88
SHMT1-203ENST00000354098 VPS26BQ4G0F5 336 aa20.53■□□□□ 0.88
SHMT1-203ENST00000354098 ABHD17BQ5VST6 288 aa20.53■□□□□ 0.88
SHMT1-203ENST00000354098 GK5Q6ZS86 529 aa20.53■□□□□ 0.88
SHMT1-203ENST00000354098 BEST3Q8N1M1 668 aa20.53■□□□□ 0.88
SHMT1-203ENST00000354098 CLEC4FQ8N1N0 589 aa20.53■□□□□ 0.88
SHMT1-203ENST00000354098 NUBPLQ8TB37 319 aa20.53■□□□□ 0.88
SHMT1-203ENST00000354098 ADIPOR1Q96A54 375 aa20.53■□□□□ 0.88
SHMT1-203ENST00000354098 FAM120BQ96EK7 910 aaKnown RBP20.53■□□□□ 0.88
SHMT1-203ENST00000354098 CCDC115Q96NT0 180 aa20.53■□□□□ 0.88
SHMT1-203ENST00000354098 ZNF71Q9NQZ8 489 aaPredicted RBP20.53■□□□□ 0.88
SHMT1-203ENST00000354098 PLA2G3Q9NZ20 509 aa20.53■□□□□ 0.88
SHMT1-203ENST00000354098 TEKT2Q9UIF3 430 aa20.53■□□□□ 0.88
SHMT1-203ENST00000354098 BTNL2Q9UIR0 455 aa20.53■□□□□ 0.88
SHMT1-203ENST00000354098 TP53TG5Q9Y2B4 290 aa20.53■□□□□ 0.88
SHMT1-203ENST00000354098 HEMK1Q9Y5R4 338 aaPredicted RBP20.53■□□□□ 0.88
SHMT1-203ENST00000354098 ZNF354AO60765 605 aaPredicted RBP20.52■□□□□ 0.88
SHMT1-203ENST00000354098 BCAS2O75934 225 aaPredicted RBP20.52■□□□□ 0.88
SHMT1-203ENST00000354098 OR2J2O76002 312 aa20.52■□□□□ 0.88
SHMT1-203ENST00000354098 PSMG1O95456 288 aa20.52■□□□□ 0.88
SHMT1-203ENST00000354098 CAPN3P20807 821 aa20.52■□□□□ 0.88
SHMT1-203ENST00000354098 KCNK10P57789 538 aa20.52■□□□□ 0.88
SHMT1-203ENST00000354098 LY6DQ14210 128 aa20.52■□□□□ 0.88
SHMT1-203ENST00000354098 SZRD1Q7Z422 152 aa20.52■□□□□ 0.88
SHMT1-203ENST00000354098 NUP43Q8NFH3 380 aa20.52■□□□□ 0.88
SHMT1-203ENST00000354098 OR5AK3PQ8NH89 298 aa20.52■□□□□ 0.88
SHMT1-203ENST00000354098 SPDL1Q96EA4 605 aa20.52■□□□□ 0.88
SHMT1-203ENST00000354098 ITPAQ9BY32 194 aa20.52■□□□□ 0.88
SHMT1-203ENST00000354098 ADNPQ9H2P0 1102 aa20.52■□□□□ 0.88
SHMT1-203ENST00000354098 NEUROD4Q9HD90 331 aa20.52■□□□□ 0.88
SHMT1-203ENST00000354098 SERHLQ9NQF3 203 aa20.52■□□□□ 0.88
SHMT1-203ENST00000354098 PCDHGB4Q9UN71 923 aa20.52■□□□□ 0.88
SHMT1-203ENST00000354098 ASPDHA6ND91 283 aa20.51■□□□□ 0.87
SHMT1-203ENST00000354098 CCDC154A6NI56 674 aa20.51■□□□□ 0.87
SHMT1-203ENST00000354098 EMC8O43402 210 aa20.51■□□□□ 0.87
SHMT1-203ENST00000354098 ITGA10O75578 1167 aa20.51■□□□□ 0.87
SHMT1-203ENST00000354098 ALPPP05187 535 aa20.51■□□□□ 0.87
SHMT1-203ENST00000354098 IFI6P09912 130 aa20.51■□□□□ 0.87
SHMT1-203ENST00000354098 CDKN2CP42773 168 aa20.51■□□□□ 0.87
SHMT1-203ENST00000354098 CCT3P49368 545 aaKnown RBP20.51■□□□□ 0.87
SHMT1-203ENST00000354098 MFAP5Q13361 173 aa20.51■□□□□ 0.87
SHMT1-203ENST00000354098 WDR53Q7Z5U6 358 aaPredicted RBP20.51■□□□□ 0.87
SHMT1-203ENST00000354098 ZNF441Q8N8Z8 693 aa20.51■□□□□ 0.87
SHMT1-203ENST00000354098 LMF1Q96S06 567 aa20.51■□□□□ 0.87
SHMT1-203ENST00000354098 FOLH1BQ9HBA9 442 aa20.51■□□□□ 0.87
SHMT1-203ENST00000354098 C3orf14Q9HBI5 128 aa20.51■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms