RNA–Protein interactions for RNA: ENST00000339865.9

USP47-202, Transcript of ubiquitin specific peptidase 47, humanhuman

TSL 2 BASIC

Gene USP47, Length 7,775 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP47-202ENST00000339865 ZBED3Q96IU2 234 aaPredicted RBP12.29□□□□□ -0.44
USP47-202ENST00000339865 HNRNPABQ99729 332 aaKnown RBP12.29□□□□□ -0.44
USP47-202ENST00000339865 FAM86C1Q9NVL1 165 aa12.29□□□□□ -0.44
USP47-202ENST00000339865 PLEKHJ1Q9NW61 149 aa12.29□□□□□ -0.44
USP47-202ENST00000339865 HEATR5BQ9P2D3 2071 aa12.29□□□□□ -0.44
USP47-202ENST00000339865 CPQQ9Y646 472 aa12.29□□□□□ -0.44
USP47-202ENST00000339865 DVL1O14640 695 aa12.29□□□□□ -0.44
USP47-202ENST00000339865 RD3LP0DJH9 198 aa12.29□□□□□ -0.44
USP47-202ENST00000339865 CD52P31358 61 aa12.29□□□□□ -0.44
USP47-202ENST00000339865 DVL1P1P54792 670 aaPredicted RBP12.29□□□□□ -0.44
USP47-202ENST00000339865 IGFN1Q86VF2 1251 aa12.29□□□□□ -0.44
USP47-202ENST00000339865 XYLT1Q86Y38 959 aa12.29□□□□□ -0.44
USP47-202ENST00000339865 LRCH4O75427 683 aa12.29□□□□□ -0.44
USP47-202ENST00000339865 FAM214AQ32MH5 1076 aa12.29□□□□□ -0.44
USP47-202ENST00000339865 ERMP1Q7Z2K6 904 aa12.29□□□□□ -0.44
USP47-202ENST00000339865 TRUB1Q8WWH5 349 aaKnown RBP12.29□□□□□ -0.44
USP47-202ENST00000339865 HTRA2O43464 458 aaPredicted RBP12.29□□□□□ -0.44
USP47-202ENST00000339865 CAPNS1P04632 268 aa12.29□□□□□ -0.44
USP47-202ENST00000339865 CLEC3BP05452 202 aa12.29□□□□□ -0.44
USP47-202ENST00000339865 TAS2R31P59538 309 aa12.29□□□□□ -0.44
USP47-202ENST00000339865 SLC5A11Q8WWX8 675 aa12.29□□□□□ -0.44
USP47-202ENST00000339865 ELNP15502 786 aa12.29□□□□□ -0.44
USP47-202ENST00000339865 KLRK1P26718 216 aa12.29□□□□□ -0.44
USP47-202ENST00000339865 PDLIM3Q53GG5 364 aaPredicted RBP12.29□□□□□ -0.44
USP47-202ENST00000339865 ZNF546Q86UE3 836 aa12.29□□□□□ -0.44
USP47-202ENST00000339865 PIM3Q86V86 326 aa12.29□□□□□ -0.44
USP47-202ENST00000339865 NATD1Q8N6N6 113 aa12.29□□□□□ -0.44
USP47-202ENST00000339865 SPIN2AQ99865 258 aa12.29□□□□□ -0.44
USP47-202ENST00000339865 SPIN2BQ9BPZ2 258 aa12.29□□□□□ -0.44
USP47-202ENST00000339865 GINS3Q9BRX5 216 aa12.29□□□□□ -0.44
USP47-202ENST00000339865 TTPALQ9BTX7 342 aa12.29□□□□□ -0.44
USP47-202ENST00000339865 MEIS2O14770 477 aa12.29□□□□□ -0.44
USP47-202ENST00000339865 SERPINE2P07093 398 aa12.29□□□□□ -0.44
USP47-202ENST00000339865 TMEM225BP0DP42 221 aa12.29□□□□□ -0.44
USP47-202ENST00000339865 BIDP55957 195 aa12.29□□□□□ -0.44
USP47-202ENST00000339865 GTF2BQ00403 316 aa12.29□□□□□ -0.44
USP47-202ENST00000339865 ID2Q02363 134 aa12.29□□□□□ -0.44
USP47-202ENST00000339865 PHYHD1Q5SRE7 291 aa12.29□□□□□ -0.44
USP47-202ENST00000339865 ZNF836Q6ZNA1 936 aa12.29□□□□□ -0.44
USP47-202ENST00000339865 TICAM1Q8IUC6 712 aa12.29□□□□□ -0.44
USP47-202ENST00000339865 LILRB3O75022 631 aa12.28□□□□□ -0.44
USP47-202ENST00000339865 CRTAPO75718 401 aaPredicted RBP12.28□□□□□ -0.44
USP47-202ENST00000339865 ALPIP09923 528 aa12.28□□□□□ -0.44
USP47-202ENST00000339865 SMIM10L2AP0DMW4 78 aa12.28□□□□□ -0.44
USP47-202ENST00000339865 SMIM10L2BP0DMW5 78 aa12.28□□□□□ -0.44
USP47-202ENST00000339865 LIPCP11150 499 aa12.28□□□□□ -0.44
USP47-202ENST00000339865 ACP5P13686 325 aa12.28□□□□□ -0.44
USP47-202ENST00000339865 SSTR2P30874 369 aa12.28□□□□□ -0.44
USP47-202ENST00000339865 PBX3P40426 434 aa12.28□□□□□ -0.44
USP47-202ENST00000339865 RPS13P62277 151 aaKnown RBP12.28□□□□□ -0.44
USP47-202ENST00000339865 DBPQ10586 325 aaPredicted RBP12.28□□□□□ -0.44
USP47-202ENST00000339865 HEPHL1Q6MZM0 1159 aa12.28□□□□□ -0.44
USP47-202ENST00000339865 FIGNL1Q6PIW4 674 aa12.28□□□□□ -0.44
USP47-202ENST00000339865 TECPR1Q7Z6L1 1165 aa12.28□□□□□ -0.44
USP47-202ENST00000339865 TMEM150AQ86TG1 271 aa12.28□□□□□ -0.44
USP47-202ENST00000339865 FAM160A2Q8N612 972 aaPredicted RBP12.28□□□□□ -0.44
USP47-202ENST00000339865 OR4K15Q8NH41 348 aa12.28□□□□□ -0.44
USP47-202ENST00000339865 ZNF596Q8TC21 504 aa12.28□□□□□ -0.44
USP47-202ENST00000339865 FUBP3Q96I24 572 aaKnown RBP eCLIP12.28□□□□□ -0.44
USP47-202ENST00000339865 BCL7BQ9BQE9 202 aa12.28□□□□□ -0.44
USP47-202ENST00000339865 OXSMQ9NWU1 459 aa12.28□□□□□ -0.44
USP47-202ENST00000339865 KLHL33A6NCF5 533 aa12.28□□□□□ -0.44
USP47-202ENST00000339865 ZNF891A8MT65 544 aaPredicted RBP12.28□□□□□ -0.44
USP47-202ENST00000339865 G6PDP11413 515 aa12.28□□□□□ -0.44
USP47-202ENST00000339865 CDONQ4KMG0 1287 aa12.28□□□□□ -0.44
USP47-202ENST00000339865 FBXW12Q6X9E4 464 aa12.28□□□□□ -0.44
USP47-202ENST00000339865 TCTE3Q8IZS6 198 aa12.28□□□□□ -0.44
USP47-202ENST00000339865 OR4K1Q8NGD4 311 aa12.28□□□□□ -0.44
USP47-202ENST00000339865 ZNF597Q96LX8 424 aa12.28□□□□□ -0.44
USP47-202ENST00000339865 SLC6A17Q9H1V8 727 aa12.28□□□□□ -0.44
USP47-202ENST00000339865 ACSL6Q9UKU0 697 aa12.28□□□□□ -0.44
USP47-202ENST00000339865 VSX2P58304 361 aaPredicted RBP12.28□□□□□ -0.44
USP47-202ENST00000339865 DESI1Q6ICB0 168 aa12.28□□□□□ -0.44
USP47-202ENST00000339865 DCUN1D3Q8IWE4 304 aa12.28□□□□□ -0.44
USP47-202ENST00000339865 RAB8BQ92930 207 aa12.28□□□□□ -0.44
USP47-202ENST00000339865 MICU1Q9BPX6 476 aa12.28□□□□□ -0.44
USP47-202ENST00000339865 ACKR4Q9NPB9 350 aa12.28□□□□□ -0.44
USP47-202ENST00000339865 PURGQ9UJV8 347 aaKnown RBP12.28□□□□□ -0.44
USP47-202ENST00000339865 BCORL1Q5H9F3 1711 aa12.28□□□□□ -0.44
USP47-202ENST00000339865 LRRTM2O43300 516 aa12.28□□□□□ -0.44
USP47-202ENST00000339865 TACR2P21452 398 aa12.28□□□□□ -0.44
USP47-202ENST00000339865 CLCNKAP51800 687 aa12.28□□□□□ -0.44
USP47-202ENST00000339865 RPL11P62913 178 aaKnown RBP12.28□□□□□ -0.44
USP47-202ENST00000339865 KCNAB2Q13303 367 aa12.28□□□□□ -0.44
USP47-202ENST00000339865 PDZD11Q5EBL8 140 aa12.28□□□□□ -0.44
USP47-202ENST00000339865 MR1Q95460 341 aa12.28□□□□□ -0.44
USP47-202ENST00000339865 FKBP10Q96AY3 582 aa12.28□□□□□ -0.44
USP47-202ENST00000339865 GOLGA2P5Q9HBQ8 144 aa12.28□□□□□ -0.44
USP47-202ENST00000339865 PRKYO43930 277 aa12.28□□□□□ -0.44
USP47-202ENST00000339865 CDC123O75794 336 aaPredicted RBP12.28□□□□□ -0.44
USP47-202ENST00000339865 ADORA3P0DMS8 318 aa12.28□□□□□ -0.44
USP47-202ENST00000339865 RAB8AP61006 207 aa12.28□□□□□ -0.44
USP47-202ENST00000339865 HMGN2P46Q86SG4 172 aa12.28□□□□□ -0.44
USP47-202ENST00000339865 THAP3Q8WTV1 239 aaPredicted RBP12.28□□□□□ -0.44
USP47-202ENST00000339865 RAB11FIP5Q9BXF6 653 aa12.28□□□□□ -0.44
USP47-202ENST00000339865 CPS1P31327 1500 aa12.28□□□□□ -0.44
USP47-202ENST00000339865 NFATC1O95644 943 aa12.28□□□□□ -0.44
USP47-202ENST00000339865 F3P13726 295 aa12.28□□□□□ -0.44
USP47-202ENST00000339865 RHOQP17081 205 aa12.28□□□□□ -0.44
USP47-202ENST00000339865 SOX3P41225 446 aa12.28□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms