RNA–Protein interactions for RNA: ENST00000339394.6

SDC3-202, Transcript of syndecan 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC3, Length 1,580 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-202ENST00000339394 TRBV11-1A0A0K0K1C0 115 aa20.6■□□□□ 0.89
SDC3-202ENST00000339394 ANGPT2O15123 496 aa20.6■□□□□ 0.89
SDC3-202ENST00000339394 BCAS2O75934 225 aaPredicted RBP20.6■□□□□ 0.89
SDC3-202ENST00000339394 ITGAMP11215 1152 aa20.6■□□□□ 0.89
SDC3-202ENST00000339394 CCT3P49368 545 aaKnown RBP20.6■□□□□ 0.89
SDC3-202ENST00000339394 CYLC2Q14093 348 aaPredicted RBP20.6■□□□□ 0.89
SDC3-202ENST00000339394 C6orf10Q5SRN2 563 aa20.6■□□□□ 0.89
SDC3-202ENST00000339394 HSDL2Q6YN16 418 aa20.6■□□□□ 0.89
SDC3-202ENST00000339394 RP9Q8TA86 221 aaKnown RBP20.6■□□□□ 0.89
SDC3-202ENST00000339394 THOC3Q96J01 351 aaKnown RBP20.6■□□□□ 0.89
SDC3-202ENST00000339394 LEF1Q9UJU2 399 aaPredicted RBP20.6■□□□□ 0.89
SDC3-202ENST00000339394 CROCCQ5TZA2 2017 aa20.6■□□□□ 0.89
SDC3-202ENST00000339394 FBP2O00757 339 aa20.59■□□□□ 0.89
SDC3-202ENST00000339394 EMC8O43402 210 aa20.59■□□□□ 0.89
SDC3-202ENST00000339394 NME6O75414 186 aaPredicted RBP20.59■□□□□ 0.89
SDC3-202ENST00000339394 GSNP06396 782 aa20.59■□□□□ 0.89
SDC3-202ENST00000339394 ITGA3P26006 1051 aa20.59■□□□□ 0.89
SDC3-202ENST00000339394 EMDP50402 254 aa20.59■□□□□ 0.89
SDC3-202ENST00000339394 PRKAG1P54619 331 aa20.59■□□□□ 0.89
SDC3-202ENST00000339394 TMEM64Q6YI46 380 aa20.59■□□□□ 0.89
SDC3-202ENST00000339394 RETREG3Q86VR2 466 aa20.59■□□□□ 0.89
SDC3-202ENST00000339394 APLFQ8IW19 511 aaPredicted RBP20.59■□□□□ 0.89
SDC3-202ENST00000339394 C9orf40Q8IXQ3 194 aa20.59■□□□□ 0.89
SDC3-202ENST00000339394 CLEC4FQ8N1N0 589 aa20.59■□□□□ 0.89
SDC3-202ENST00000339394 GALNT16Q8N428 558 aa20.59■□□□□ 0.89
SDC3-202ENST00000339394 POU5F2Q8N7G0 328 aa20.59■□□□□ 0.89
SDC3-202ENST00000339394 OR5AK3PQ8NH89 298 aa20.59■□□□□ 0.89
SDC3-202ENST00000339394 C16orf52Q8NHV5 167 aa20.59■□□□□ 0.89
SDC3-202ENST00000339394 C3orf14Q9HBI5 128 aa20.59■□□□□ 0.89
SDC3-202ENST00000339394 SLC6A13Q9NSD5 602 aa20.59■□□□□ 0.89
SDC3-202ENST00000339394 ZCCHC3Q9NUD5 404 aaKnown RBP20.59■□□□□ 0.89
SDC3-202ENST00000339394 SDAD1Q9NVU7 687 aaKnown RBP eCLIP20.59■□□□□ 0.89
SDC3-202ENST00000339394 SLAMF8Q9P0V8 285 aa20.59■□□□□ 0.89
SDC3-202ENST00000339394 PRKNO60260 465 aaPredicted RBP20.59■□□□□ 0.89
SDC3-202ENST00000339394 PRAMEF2O60811 474 aa20.59■□□□□ 0.89
SDC3-202ENST00000339394 DNAJB5O75953 348 aa20.59■□□□□ 0.89
SDC3-202ENST00000339394 PSMG1O95456 288 aa20.59■□□□□ 0.89
SDC3-202ENST00000339394 COX4I1P13073 169 aa20.59■□□□□ 0.89
SDC3-202ENST00000339394 SOAT1P35610 550 aa20.59■□□□□ 0.89
SDC3-202ENST00000339394 TRPC1P48995 793 aa20.59■□□□□ 0.89
SDC3-202ENST00000339394 SOX8P57073 446 aa20.59■□□□□ 0.89
SDC3-202ENST00000339394 AP2B1P63010 937 aa20.59■□□□□ 0.89
SDC3-202ENST00000339394 RNF4P78317 190 aa20.59■□□□□ 0.89
SDC3-202ENST00000339394 PRR5P85299 388 aa20.59■□□□□ 0.89
SDC3-202ENST00000339394 GAB1Q13480 694 aa20.59■□□□□ 0.89
SDC3-202ENST00000339394 SPDYE7PQ495Y7 208 aa20.59■□□□□ 0.89
SDC3-202ENST00000339394 DNAJC14Q6Y2X3 702 aaPredicted RBP20.59■□□□□ 0.89
SDC3-202ENST00000339394 ZNF621Q6ZSS3 439 aa20.59■□□□□ 0.89
SDC3-202ENST00000339394 SZRD1Q7Z422 152 aa20.59■□□□□ 0.89
SDC3-202ENST00000339394 NUP43Q8NFH3 380 aa20.59■□□□□ 0.89
SDC3-202ENST00000339394 OR8K3Q8NH51 312 aa20.59■□□□□ 0.89
SDC3-202ENST00000339394 DEFB126Q9BYW3 111 aa20.59■□□□□ 0.89
SDC3-202ENST00000339394 LHPPQ9H008 270 aa20.59■□□□□ 0.89
SDC3-202ENST00000339394 DTX4Q9Y2E6 619 aa20.59■□□□□ 0.89
SDC3-202ENST00000339394 DSPP15924 2871 aaKnown RBP20.58■□□□□ 0.89
SDC3-202ENST00000339394 A8MUI8 341 aa20.58■□□□□ 0.88
SDC3-202ENST00000339394 ZFAND5O76080 213 aa20.58■□□□□ 0.88
SDC3-202ENST00000339394 UQCRC2P22695 453 aa20.58■□□□□ 0.88
SDC3-202ENST00000339394 PTPN6P29350 595 aa20.58■□□□□ 0.88
SDC3-202ENST00000339394 CCL11P51671 97 aa20.58■□□□□ 0.88
SDC3-202ENST00000339394 STX5Q13190 355 aa20.58■□□□□ 0.88
SDC3-202ENST00000339394 DPP10Q8N608 796 aa20.58■□□□□ 0.88
SDC3-202ENST00000339394 TRIML2Q8N7C3 387 aa20.58■□□□□ 0.88
SDC3-202ENST00000339394 BRIX1Q8TDN6 353 aaKnown RBP20.58■□□□□ 0.88
SDC3-202ENST00000339394 THAP3Q8WTV1 239 aaPredicted RBP20.58■□□□□ 0.88
SDC3-202ENST00000339394 APOBEC4Q8WW27 367 aaKnown RBP20.58■□□□□ 0.88
SDC3-202ENST00000339394 PSMF1Q92530 271 aa20.58■□□□□ 0.88
SDC3-202ENST00000339394 CMTM5Q96DZ9 223 aa20.58■□□□□ 0.88
SDC3-202ENST00000339394 CRELD1Q96HD1 420 aa20.58■□□□□ 0.88
SDC3-202ENST00000339394 PAIP1Q9H074 479 aaKnown RBP20.58■□□□□ 0.88
SDC3-202ENST00000339394 MAP10Q9P2G4 905 aa20.58■□□□□ 0.88
SDC3-202ENST00000339394 VPS4AQ9UN37 437 aa20.58■□□□□ 0.88
SDC3-202ENST00000339394 HEMK1Q9Y5R4 338 aaPredicted RBP20.58■□□□□ 0.88
SDC3-202ENST00000339394 GIMAP1-GIMAP5A0A087WTJ2 511 aa20.57■□□□□ 0.88
SDC3-202ENST00000339394 RNF103-CHMP3A0A140T963 221 aa20.57■□□□□ 0.88
SDC3-202ENST00000339394 TMEM200CA6NKL6 621 aa20.57■□□□□ 0.88
SDC3-202ENST00000339394 A6NL46 340 aa20.57■□□□□ 0.88
SDC3-202ENST00000339394 OR6C76A6NM76 312 aa20.57■□□□□ 0.88
SDC3-202ENST00000339394 COQ9O75208 318 aa20.57■□□□□ 0.88
SDC3-202ENST00000339394 ANP32DO95626 131 aa20.57■□□□□ 0.88
SDC3-202ENST00000339394 MYBPC3Q14896 1274 aa20.57■□□□□ 0.88
SDC3-202ENST00000339394 EBPQ15125 230 aaKnown RBP20.57■□□□□ 0.88
SDC3-202ENST00000339394 MMEL1Q495T6 779 aa20.57■□□□□ 0.88
SDC3-202ENST00000339394 FAM91A1Q658Y4 838 aa20.57■□□□□ 0.88
SDC3-202ENST00000339394 JMJD6Q6NYC1 403 aaPredicted RBP20.57■□□□□ 0.88
SDC3-202ENST00000339394 SLC29A4Q7RTT9 530 aa20.57■□□□□ 0.88
SDC3-202ENST00000339394 SFXN5Q8TD22 340 aa20.57■□□□□ 0.88
SDC3-202ENST00000339394 MOAP1Q96BY2 351 aa20.57■□□□□ 0.88
SDC3-202ENST00000339394 GIMAP5Q96F15 307 aa20.57■□□□□ 0.88
SDC3-202ENST00000339394 PHF12Q96QT6 1004 aa20.57■□□□□ 0.88
SDC3-202ENST00000339394 PRODH2Q9UF12 536 aa20.57■□□□□ 0.88
SDC3-202ENST00000339394 CFL2Q9Y281 166 aa20.57■□□□□ 0.88
SDC3-202ENST00000339394 PCDHB14Q9Y5E9 798 aa20.57■□□□□ 0.88
SDC3-202ENST00000339394 A0A096LPI6 279 aa20.56■□□□□ 0.88
SDC3-202ENST00000339394 C2orf92A0A1B0GVN3 265 aa20.56■□□□□ 0.88
SDC3-202ENST00000339394 BBIP1A8MTZ0 92 aa20.56■□□□□ 0.88
SDC3-202ENST00000339394 ERN1O75460 977 aaKnown RBP20.56■□□□□ 0.88
SDC3-202ENST00000339394 ZCCHC18P0CG32 403 aa20.56■□□□□ 0.88
SDC3-202ENST00000339394 TP53BP2Q13625 1128 aa20.56■□□□□ 0.88
SDC3-202ENST00000339394 GTDC1Q4AE62 458 aa20.56■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 46.4 ms