RNA–Protein interactions for RNA: ENST00000332797.10

CCDC28A-201, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,496 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-201ENST00000332797 SOX3P41225 446 aa14.71□□□□□ -0.05
CCDC28A-201ENST00000332797 MANFP55145 182 aaKnown RBP14.71□□□□□ -0.05
CCDC28A-201ENST00000332797 NME5P56597 212 aa14.71□□□□□ -0.05
CCDC28A-201ENST00000332797 SPINK14Q6IE38 97 aa14.71□□□□□ -0.05
CCDC28A-201ENST00000332797 EPGNQ6UW88 154 aa14.71□□□□□ -0.05
CCDC28A-201ENST00000332797 ACAD11Q709F0 780 aa14.71□□□□□ -0.05
CCDC28A-201ENST00000332797 CYP4Z2PQ8N1L4 340 aa14.71□□□□□ -0.05
CCDC28A-201ENST00000332797 HORMAD2Q8N7B1 307 aa14.71□□□□□ -0.05
CCDC28A-201ENST00000332797 MDS2Q8NDY4 140 aa14.71□□□□□ -0.05
CCDC28A-201ENST00000332797 SLC22A8Q8TCC7 542 aa14.71□□□□□ -0.05
CCDC28A-201ENST00000332797 ERP27Q96DN0 273 aa14.71□□□□□ -0.05
CCDC28A-201ENST00000332797 ZBED6CLQ96FA7 236 aaPredicted RBP14.71□□□□□ -0.05
CCDC28A-201ENST00000332797 MAGED4Q96JG8 741 aa14.71□□□□□ -0.05
CCDC28A-201ENST00000332797 MARK4Q96L34 752 aa14.71□□□□□ -0.05
CCDC28A-201ENST00000332797 ITPAQ9BY32 194 aa14.71□□□□□ -0.05
CCDC28A-201ENST00000332797 EPN3Q9H201 632 aa14.71□□□□□ -0.05
CCDC28A-201ENST00000332797 AIG1Q9NVV5 245 aa14.71□□□□□ -0.05
CCDC28A-201ENST00000332797 CFL2Q9Y281 166 aa14.71□□□□□ -0.05
CCDC28A-201ENST00000332797 PCDHGA10Q9Y5H3 936 aa14.71□□□□□ -0.05
CCDC28A-201ENST00000332797 A8MVJ9 347 aa14.7□□□□□ -0.06
CCDC28A-201ENST00000332797 CDK2AP1O14519 115 aa14.7□□□□□ -0.06
CCDC28A-201ENST00000332797 PLOD3O60568 738 aa14.7□□□□□ -0.06
CCDC28A-201ENST00000332797 ZNF354AO60765 605 aaPredicted RBP14.7□□□□□ -0.06
CCDC28A-201ENST00000332797 EDF1O60869 148 aaKnown RBP14.7□□□□□ -0.06
CCDC28A-201ENST00000332797 BCAS2O75934 225 aaPredicted RBP14.7□□□□□ -0.06
CCDC28A-201ENST00000332797 NEURL1O76050 574 aa14.7□□□□□ -0.06
CCDC28A-201ENST00000332797 SLITRK5O94991 958 aa14.7□□□□□ -0.06
CCDC28A-201ENST00000332797 OR6B1O95007 311 aa14.7□□□□□ -0.06
CCDC28A-201ENST00000332797 TGDSO95455 350 aa14.7□□□□□ -0.06
CCDC28A-201ENST00000332797 GPX3P22352 226 aa14.7□□□□□ -0.06
CCDC28A-201ENST00000332797 FRKP42685 505 aaPredicted RBP14.7□□□□□ -0.06
CCDC28A-201ENST00000332797 NR0B1P51843 470 aaKnown RBP14.7□□□□□ -0.06
CCDC28A-201ENST00000332797 AQP5P55064 265 aa14.7□□□□□ -0.06
CCDC28A-201ENST00000332797 C21orf58P58505 322 aa14.7□□□□□ -0.06
CCDC28A-201ENST00000332797 GUCY1A3Q02108 690 aa14.7□□□□□ -0.06
CCDC28A-201ENST00000332797 PGS1Q32NB8 556 aa14.7□□□□□ -0.06
CCDC28A-201ENST00000332797 PIGGQ5H8A4 983 aa14.7□□□□□ -0.06
CCDC28A-201ENST00000332797 ZNF766Q5HY98 468 aa14.7□□□□□ -0.06
CCDC28A-201ENST00000332797 FHL5Q5TD97 284 aa14.7□□□□□ -0.06
CCDC28A-201ENST00000332797 TMEM198Q66K66 360 aa14.7□□□□□ -0.06
CCDC28A-201ENST00000332797 IL20RBQ6UXL0 311 aa14.7□□□□□ -0.06
CCDC28A-201ENST00000332797 CEP70Q8NHQ1 597 aa14.7□□□□□ -0.06
CCDC28A-201ENST00000332797 THOC1Q96FV9 657 aaKnown RBP14.7□□□□□ -0.06
CCDC28A-201ENST00000332797 C5orf34Q96MH7 638 aa14.7□□□□□ -0.06
CCDC28A-201ENST00000332797 HES7Q9BYE0 225 aa14.7□□□□□ -0.06
CCDC28A-201ENST00000332797 KLHL1Q9NR64 748 aa14.7□□□□□ -0.06
CCDC28A-201ENST00000332797 ACSS1Q9NUB1 689 aaPredicted RBP14.7□□□□□ -0.06
CCDC28A-201ENST00000332797 HPF1Q9NWY4 346 aa14.7□□□□□ -0.06
CCDC28A-201ENST00000332797 PRODH2Q9UF12 536 aa14.7□□□□□ -0.06
CCDC28A-201ENST00000332797 MAPRE3Q9UPY8 281 aa14.7□□□□□ -0.06
CCDC28A-201ENST00000332797 ERVK-11Q9UQG0 969 aa14.7□□□□□ -0.06
CCDC28A-201ENST00000332797 POLR3GO15318 223 aaPredicted RBP14.69□□□□□ -0.06
CCDC28A-201ENST00000332797 NME6O75414 186 aaPredicted RBP14.69□□□□□ -0.06
CCDC28A-201ENST00000332797 SLC25A12O75746 678 aa14.69□□□□□ -0.06
CCDC28A-201ENST00000332797 NADKO95544 446 aaPredicted RBP14.69□□□□□ -0.06
CCDC28A-201ENST00000332797 CD46P15529 392 aa14.69□□□□□ -0.06
CCDC28A-201ENST00000332797 IDH3AP50213 366 aa14.69□□□□□ -0.06
CCDC28A-201ENST00000332797 EMDP50402 254 aa14.69□□□□□ -0.06
CCDC28A-201ENST00000332797 CDK9P50750 372 aaKnown RBP14.69□□□□□ -0.06
CCDC28A-201ENST00000332797 MLLT10P55197 1068 aa14.69□□□□□ -0.06
CCDC28A-201ENST00000332797 NNATQ16517 81 aa14.69□□□□□ -0.06
CCDC28A-201ENST00000332797 LSM12Q3MHD2 195 aaKnown RBP14.69□□□□□ -0.06
CCDC28A-201ENST00000332797 PRR30Q53SZ7 412 aaPredicted RBP14.69□□□□□ -0.06
CCDC28A-201ENST00000332797 OPN5Q6U736 354 aa14.69□□□□□ -0.06
CCDC28A-201ENST00000332797 GPALPP1Q8IXQ4 340 aa14.69□□□□□ -0.06
CCDC28A-201ENST00000332797 ZNF441Q8N8Z8 693 aa14.69□□□□□ -0.06
CCDC28A-201ENST00000332797 ADIPOR1Q96A54 375 aa14.69□□□□□ -0.06
CCDC28A-201ENST00000332797 TMEM125Q96AQ2 219 aa14.69□□□□□ -0.06
CCDC28A-201ENST00000332797 COQ8BQ96D53 544 aa14.69□□□□□ -0.06
CCDC28A-201ENST00000332797 ELP4Q96EB1 424 aa14.69□□□□□ -0.06
CCDC28A-201ENST00000332797 EBF4Q9BQW3 602 aa14.69□□□□□ -0.06
CCDC28A-201ENST00000332797 DUSP26Q9BV47 211 aa14.69□□□□□ -0.06
CCDC28A-201ENST00000332797 TRIM45Q9H8W5 580 aaPredicted RBP14.69□□□□□ -0.06
CCDC28A-201ENST00000332797 DDX18Q9NVP1 670 aaKnown RBP14.69□□□□□ -0.06
CCDC28A-201ENST00000332797 MAP10Q9P2G4 905 aa14.69□□□□□ -0.06
CCDC28A-201ENST00000332797 A0A087WV62 115 aa14.69□□□□□ -0.06
CCDC28A-201ENST00000332797 A0A1W2PRB8 838 aa14.69□□□□□ -0.06
CCDC28A-201ENST00000332797 PLOD2O00469 737 aa14.69□□□□□ -0.06
CCDC28A-201ENST00000332797 ANKRD28O15084 1053 aa14.69□□□□□ -0.06
CCDC28A-201ENST00000332797 COQ9O75208 318 aa14.69□□□□□ -0.06
CCDC28A-201ENST00000332797 IDO1P14902 403 aa14.69□□□□□ -0.06
CCDC28A-201ENST00000332797 CLNS1AP54105 237 aaKnown RBP14.69□□□□□ -0.06
CCDC28A-201ENST00000332797 ZNF155Q12901 538 aaPredicted RBP14.69□□□□□ -0.06
CCDC28A-201ENST00000332797 RPS6KA2Q15349 733 aa14.69□□□□□ -0.06
CCDC28A-201ENST00000332797 SZRD1Q7Z422 152 aa14.69□□□□□ -0.06
CCDC28A-201ENST00000332797 ZNF227Q86WZ6 799 aa14.69□□□□□ -0.06
CCDC28A-201ENST00000332797 TAGAPQ8N103 731 aa14.69□□□□□ -0.06
CCDC28A-201ENST00000332797 TP53INP1Q96A56 240 aa14.69□□□□□ -0.06
CCDC28A-201ENST00000332797 BHLHE41Q9C0J9 482 aaPredicted RBP14.69□□□□□ -0.06
CCDC28A-201ENST00000332797 NXF5Q9H1B4 397 aaKnown RBP14.69□□□□□ -0.06
CCDC28A-201ENST00000332797 TCF7L2Q9NQB0 619 aa14.69□□□□□ -0.06
CCDC28A-201ENST00000332797 TAS2R9Q9NYW1 312 aa14.69□□□□□ -0.06
CCDC28A-201ENST00000332797 C19orf53Q9UNZ5 99 aaPredicted RBP14.69□□□□□ -0.06
CCDC28A-201ENST00000332797 GPR45Q9Y5Y3 372 aa14.69□□□□□ -0.06
CCDC28A-201ENST00000332797 E9PBE3 544 aa14.68□□□□□ -0.06
CCDC28A-201ENST00000332797 UPK1AO00322 258 aa14.68□□□□□ -0.06
CCDC28A-201ENST00000332797 UBDO15205 165 aa14.68□□□□□ -0.06
CCDC28A-201ENST00000332797 SP1P08047 785 aa14.68□□□□□ -0.06
CCDC28A-201ENST00000332797 NRG3P56975 720 aa14.68□□□□□ -0.06
CCDC28A-201ENST00000332797 UFM1P61960 85 aa14.68□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 48.4 ms