RNA–Protein interactions for RNA: ENST00000326004.4

HMGB1-201, Transcript of high mobility group box 1, humanhuman

TSL 3 BASIC

Gene HMGB1, Length 821 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-201ENST00000326004 ASRGL1Q7L266 308 aa2.68□□□□□ -1.98
HMGB1-201ENST00000326004 GPR142Q7Z601 462 aa2.68□□□□□ -1.98
HMGB1-201ENST00000326004 SLC25A42Q86VD7 318 aa2.68□□□□□ -1.98
HMGB1-201ENST00000326004 LYG1Q8N1E2 194 aa2.68□□□□□ -1.98
HMGB1-201ENST00000326004 COLGALT1Q8NBJ5 622 aa2.68□□□□□ -1.98
HMGB1-201ENST00000326004 RDH11Q8TC12 318 aa2.68□□□□□ -1.98
HMGB1-201ENST00000326004 FBXO25Q8TCJ0 367 aa2.68□□□□□ -1.98
HMGB1-201ENST00000326004 PNPLA2Q96AD5 504 aa2.68□□□□□ -1.98
HMGB1-201ENST00000326004 DTD2Q96FN9 168 aa2.68□□□□□ -1.98
HMGB1-201ENST00000326004 WBP1Q96G27 269 aa2.68□□□□□ -1.98
HMGB1-201ENST00000326004 CAPNS2Q96L46 248 aa2.68□□□□□ -1.98
HMGB1-201ENST00000326004 C19orf43Q9BQ61 176 aa2.68□□□□□ -1.98
HMGB1-201ENST00000326004 PYGO2Q9BRQ0 406 aa2.68□□□□□ -1.98
HMGB1-201ENST00000326004 ABCG4Q9H172 646 aa2.68□□□□□ -1.98
HMGB1-201ENST00000326004 CARD9Q9H257 536 aa2.68□□□□□ -1.98
HMGB1-201ENST00000326004 LIME1Q9H400 295 aa2.68□□□□□ -1.98
HMGB1-201ENST00000326004 ERVK-18Q9QC07 812 aa2.68□□□□□ -1.98
HMGB1-201ENST00000326004 EIF3KQ9UBQ5 218 aaKnown RBP2.68□□□□□ -1.98
HMGB1-201ENST00000326004 IL19Q9UHD0 177 aa2.68□□□□□ -1.98
HMGB1-201ENST00000326004 MRPL11Q9Y3B7 192 aaKnown RBP2.68□□□□□ -1.98
HMGB1-201ENST00000326004 MTF2Q9Y483 593 aaPredicted RBP2.68□□□□□ -1.98
HMGB1-201ENST00000326004 CPQQ9Y646 472 aa2.68□□□□□ -1.98
HMGB1-201ENST00000326004 DHX29Q7Z478 1369 aaKnown RBP2.68□□□□□ -1.98
HMGB1-201ENST00000326004 ATP10BO94823 1461 aa2.68□□□□□ -1.98
HMGB1-201ENST00000326004 RALGAPBQ86X10 1494 aa2.68□□□□□ -1.98
HMGB1-201ENST00000326004 IQGAP1P46940 1657 aa2.68□□□□□ -1.98
HMGB1-201ENST00000326004 ABCC1P33527 1531 aa2.68□□□□□ -1.98
HMGB1-201ENST00000326004 AGLP35573 1532 aa2.68□□□□□ -1.98
HMGB1-201ENST00000326004 SALL1Q9NSC2 1324 aa2.68□□□□□ -1.98
HMGB1-201ENST00000326004 UNC13BO14795 1591 aa2.67□□□□□ -1.98
HMGB1-201ENST00000326004 COL2A1P02458 1487 aaPredicted RBP2.67□□□□□ -1.98
HMGB1-201ENST00000326004 A0A1B0GTH9 108 aa2.67□□□□□ -1.98
HMGB1-201ENST00000326004 SYCE3A1L190 88 aa2.67□□□□□ -1.98
HMGB1-201ENST00000326004 MACROD2A1Z1Q3 448 aa2.67□□□□□ -1.98
HMGB1-201ENST00000326004 KRT87PA6NCN2 255 aa2.67□□□□□ -1.98
HMGB1-201ENST00000326004 DUSP11O75319 330 aaKnown RBP2.67□□□□□ -1.98
HMGB1-201ENST00000326004 SH3BGRLO75368 114 aa2.67□□□□□ -1.98
HMGB1-201ENST00000326004 STAM2O75886 525 aa2.67□□□□□ -1.98
HMGB1-201ENST00000326004 IGHDP01880 384 aa2.67□□□□□ -1.98
HMGB1-201ENST00000326004 MT-ND1P03886 318 aa2.67□□□□□ -1.98
HMGB1-201ENST00000326004 FCGR3AP08637 254 aa2.67□□□□□ -1.98
HMGB1-201ENST00000326004 HIST1H2AGP0C0S8 130 aaPredicted RBP2.67□□□□□ -1.98
HMGB1-201ENST00000326004 CAPN2P17655 700 aa2.67□□□□□ -1.98
HMGB1-201ENST00000326004 DESP17661 470 aa2.67□□□□□ -1.98
HMGB1-201ENST00000326004 MAPK3P27361 379 aaPredicted RBP2.67□□□□□ -1.98
HMGB1-201ENST00000326004 CALML3P27482 149 aa2.67□□□□□ -1.98
HMGB1-201ENST00000326004 MARCKSP29966 332 aaPredicted RBP2.67□□□□□ -1.98
HMGB1-201ENST00000326004 KIF5BP33176 963 aa2.67□□□□□ -1.98
HMGB1-201ENST00000326004 HNRNPFP52597 415 aaKnown RBP2.67□□□□□ -1.98
HMGB1-201ENST00000326004 ZNF131P52739 623 aa2.67□□□□□ -1.98
HMGB1-201ENST00000326004 NDST1P52848 882 aa2.67□□□□□ -1.98
HMGB1-201ENST00000326004 HSD17B7P56937 341 aa2.67□□□□□ -1.98
HMGB1-201ENST00000326004 STARD6P59095 220 aa2.67□□□□□ -1.98
HMGB1-201ENST00000326004 GSTO1P78417 241 aa2.67□□□□□ -1.98
HMGB1-201ENST00000326004 KLF5Q13887 457 aaPredicted RBP2.67□□□□□ -1.98
HMGB1-201ENST00000326004 CCL14Q16627 93 aa2.67□□□□□ -1.98
HMGB1-201ENST00000326004 TCTEX1D4Q5JR98 221 aa2.67□□□□□ -1.98
HMGB1-201ENST00000326004 ZNF506Q5JVG8 444 aa2.67□□□□□ -1.98
HMGB1-201ENST00000326004 LCE1FQ5T754 118 aa2.67□□□□□ -1.98
HMGB1-201ENST00000326004 PRAMEF7Q5VXH5 474 aa2.67□□□□□ -1.98
HMGB1-201ENST00000326004 SEL1L3Q68CR1 1132 aa2.67□□□□□ -1.98
HMGB1-201ENST00000326004 REP15Q6BDI9 236 aa2.67□□□□□ -1.98
HMGB1-201ENST00000326004 RABEPKQ7Z6M1 372 aa2.67□□□□□ -1.98
HMGB1-201ENST00000326004 HIST2H2ABQ8IUE6 130 aaPredicted RBP2.67□□□□□ -1.98
HMGB1-201ENST00000326004 LINC00518Q8N0U6 118 aa2.67□□□□□ -1.98
HMGB1-201ENST00000326004 BATF2Q8N1L9 274 aa2.67□□□□□ -1.98
HMGB1-201ENST00000326004 FGFRL1Q8N441 504 aa2.67□□□□□ -1.98
HMGB1-201ENST00000326004 ARL6IP6Q8N6S5 226 aa2.67□□□□□ -1.98
HMGB1-201ENST00000326004 LEMD2Q8NC56 503 aa2.67□□□□□ -1.98
HMGB1-201ENST00000326004 ZNRF1Q8ND25 227 aa2.67□□□□□ -1.98
HMGB1-201ENST00000326004 CHDHQ8NE62 594 aaPredicted RBP2.67□□□□□ -1.98
HMGB1-201ENST00000326004 OR4F5Q8NH21 305 aa2.67□□□□□ -1.98
HMGB1-201ENST00000326004 EXOC6Q8TAG9 804 aa2.67□□□□□ -1.98
HMGB1-201ENST00000326004 TAF4BQ92750 862 aa2.67□□□□□ -1.98
HMGB1-201ENST00000326004 HIST1H2ACQ93077 130 aa2.67□□□□□ -1.98
HMGB1-201ENST00000326004 RUFY1Q96T51 708 aa2.67□□□□□ -1.98
HMGB1-201ENST00000326004 ZNF577Q9BSK1 485 aa2.67□□□□□ -1.98
HMGB1-201ENST00000326004 SPXQ9BT56 116 aa2.67□□□□□ -1.98
HMGB1-201ENST00000326004 RPP25Q9BUL9 199 aaKnown RBP2.67□□□□□ -1.98
HMGB1-201ENST00000326004 PUS3Q9BZE2 481 aaKnown RBP2.67□□□□□ -1.98
HMGB1-201ENST00000326004 DDX47Q9H0S4 455 aaKnown RBP2.67□□□□□ -1.98
HMGB1-201ENST00000326004 Q9HAA7 133 aa2.67□□□□□ -1.98
HMGB1-201ENST00000326004 SLC25A19Q9HC21 320 aa2.67□□□□□ -1.98
HMGB1-201ENST00000326004 TUBGCP4Q9UGJ1 667 aa2.67□□□□□ -1.98
HMGB1-201ENST00000326004 FETUBQ9UGM5 382 aa2.67□□□□□ -1.98
HMGB1-201ENST00000326004 ENTPD4Q9Y227 616 aa2.67□□□□□ -1.98
HMGB1-201ENST00000326004 FBXO7Q9Y3I1 522 aa2.67□□□□□ -1.98
HMGB1-201ENST00000326004 SHANK3Q9BYB0 1731 aa2.67□□□□□ -1.98
HMGB1-201ENST00000326004 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP2.67□□□□□ -1.985e-6■■■■□ 21.7
HMGB1-201ENST00000326004 ATRNO75882 1429 aa2.67□□□□□ -1.98
HMGB1-201ENST00000326004 NOTCH3Q9UM47 2321 aa2.67□□□□□ -1.98
HMGB1-201ENST00000326004 MED14O60244 1454 aa2.66□□□□□ -1.98
HMGB1-201ENST00000326004 TRIM49BA6NDI0 452 aa2.66□□□□□ -1.98
HMGB1-201ENST00000326004 FOXI3A8MTJ6 420 aaPredicted RBP2.66□□□□□ -1.98
HMGB1-201ENST00000326004 PRPSAP2O60256 369 aa2.66□□□□□ -1.98
HMGB1-201ENST00000326004 BCAS2O75934 225 aaPredicted RBP2.66□□□□□ -1.98
HMGB1-201ENST00000326004 REC8O95072 547 aa2.66□□□□□ -1.98
HMGB1-201ENST00000326004 SEMA4FO95754 770 aa2.66□□□□□ -1.98
HMGB1-201ENST00000326004 CCDC159P0C7I6 412 aa2.66□□□□□ -1.98
HMGB1-201ENST00000326004 GATA2P23769 480 aaPredicted RBP2.66□□□□□ -1.98
Retrieved 100 of 20,778 RNA–protein pairs in 66.4 ms