RNA–Protein interactions for RNA: ENST00000263630.12

CCDC88A-201, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,667 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-201ENST00000263630 BAGE2Q86Y30 109 aa13.34□□□□□ -0.27
CCDC88A-201ENST00000263630 LINC00116Q8NCU8 138 aa13.34□□□□□ -0.27
CCDC88A-201ENST00000263630 MCHR1Q99705 422 aa13.34□□□□□ -0.27
CCDC88A-201ENST00000263630 CD300AQ9UGN4 299 aa13.34□□□□□ -0.27
CCDC88A-201ENST00000263630 TAC3Q9UHF0 121 aa13.34□□□□□ -0.27
CCDC88A-201ENST00000263630 SLC6A5Q9Y345 797 aa13.34□□□□□ -0.27
CCDC88A-201ENST00000263630 CD8B2A6NJW9 211 aa13.34□□□□□ -0.27
CCDC88A-201ENST00000263630 MAGEB4O15481 346 aaPredicted RBP13.34□□□□□ -0.27
CCDC88A-201ENST00000263630 ARPC5O15511 151 aa13.34□□□□□ -0.27
CCDC88A-201ENST00000263630 MAS1P04201 325 aa13.34□□□□□ -0.27
CCDC88A-201ENST00000263630 TMEM225BP0DP42 221 aa13.34□□□□□ -0.27
CCDC88A-201ENST00000263630 CD8BP10966 210 aa13.34□□□□□ -0.27
CCDC88A-201ENST00000263630 ARRB1P49407 418 aaPredicted RBP13.34□□□□□ -0.27
CCDC88A-201ENST00000263630 ERMP1Q7Z2K6 904 aa13.34□□□□□ -0.27
CCDC88A-201ENST00000263630 INPP4AQ96PE3 977 aaPredicted RBP13.34□□□□□ -0.27
CCDC88A-201ENST00000263630 SUV39H2Q9H5I1 410 aa13.34□□□□□ -0.27
CCDC88A-201ENST00000263630 DNAJB11Q9UBS4 358 aa13.34□□□□□ -0.27
CCDC88A-201ENST00000263630 BTBD17A6NE02 478 aa13.34□□□□□ -0.27
CCDC88A-201ENST00000263630 ALDOAP04075 364 aaKnown RBP13.34□□□□□ -0.27
CCDC88A-201ENST00000263630 CT45A6P0DMU7 189 aa13.34□□□□□ -0.27
CCDC88A-201ENST00000263630 CT45A5P0DMU8 189 aa13.34□□□□□ -0.27
CCDC88A-201ENST00000263630 CT45A7P0DMV0 189 aa13.34□□□□□ -0.27
CCDC88A-201ENST00000263630 CT45A8P0DMV1 189 aa13.34□□□□□ -0.27
CCDC88A-201ENST00000263630 CT45A9P0DMV2 189 aa13.34□□□□□ -0.27
CCDC88A-201ENST00000263630 PNMTP11086 282 aa13.34□□□□□ -0.27
CCDC88A-201ENST00000263630 HLA-DOBP13765 273 aa13.34□□□□□ -0.27
CCDC88A-201ENST00000263630 CD53P19397 219 aa13.34□□□□□ -0.27
CCDC88A-201ENST00000263630 PRKACBP22694 351 aa13.34□□□□□ -0.27
CCDC88A-201ENST00000263630 HRH2P25021 359 aa13.34□□□□□ -0.27
CCDC88A-201ENST00000263630 GRB2P62993 217 aaKnown RBP13.34□□□□□ -0.27
CCDC88A-201ENST00000263630 CT45A2Q5DJT8 189 aa13.34□□□□□ -0.27
CCDC88A-201ENST00000263630 CT45A1Q5HYN5 189 aa13.34□□□□□ -0.27
CCDC88A-201ENST00000263630 CT45A3Q8NHU0 189 aa13.34□□□□□ -0.27
CCDC88A-201ENST00000263630 B3GNT3Q9Y2A9 372 aa13.34□□□□□ -0.27
CCDC88A-201ENST00000263630 AK1P00568 194 aa13.34□□□□□ -0.27
CCDC88A-201ENST00000263630 KNG1P01042 644 aa13.34□□□□□ -0.27
CCDC88A-201ENST00000263630 ALPIP09923 528 aa13.34□□□□□ -0.27
CCDC88A-201ENST00000263630 CBLP22681 906 aa13.34□□□□□ -0.27
CCDC88A-201ENST00000263630 HYAL2Q12891 473 aa13.34□□□□□ -0.27
CCDC88A-201ENST00000263630 WDR45BQ5MNZ6 344 aa13.34□□□□□ -0.27
CCDC88A-201ENST00000263630 PLEKHO2Q8TD55 490 aa13.34□□□□□ -0.27
CCDC88A-201ENST00000263630 PSMG2Q969U7 264 aa13.34□□□□□ -0.27
CCDC88A-201ENST00000263630 FAXDC2Q96IV6 333 aa13.34□□□□□ -0.27
CCDC88A-201ENST00000263630 CACNG6Q9BXT2 260 aa13.34□□□□□ -0.27
CCDC88A-201ENST00000263630 CUTCQ9NTM9 273 aa13.34□□□□□ -0.27
CCDC88A-201ENST00000263630 FZD10Q9ULW2 581 aa13.34□□□□□ -0.27
CCDC88A-201ENST00000263630 SMIM30A4D0T7 59 aa13.33□□□□□ -0.27
CCDC88A-201ENST00000263630 INPPL1O15357 1258 aa13.33□□□□□ -0.27
CCDC88A-201ENST00000263630 ADORA3P0DMS8 318 aa13.33□□□□□ -0.27
CCDC88A-201ENST00000263630 SELPP16109 830 aa13.33□□□□□ -0.27
CCDC88A-201ENST00000263630 BCKDHBP21953 392 aa13.33□□□□□ -0.27
CCDC88A-201ENST00000263630 DUSP7Q16829 419 aa13.33□□□□□ -0.27
CCDC88A-201ENST00000263630 FAM74A1Q5RGS3 127 aa13.33□□□□□ -0.27
CCDC88A-201ENST00000263630 NLRP8Q86W28 1048 aa13.33□□□□□ -0.27
CCDC88A-201ENST00000263630 ZFAND1Q8TCF1 268 aa13.33□□□□□ -0.27
CCDC88A-201ENST00000263630 BPIFA2Q96DR5 249 aa13.33□□□□□ -0.27
CCDC88A-201ENST00000263630 PDE7BQ9NP56 450 aa13.33□□□□□ -0.27
CCDC88A-201ENST00000263630 ADH1BP00325 375 aa13.33□□□□□ -0.28
CCDC88A-201ENST00000263630 PAX6P26367 422 aa13.33□□□□□ -0.28
CCDC88A-201ENST00000263630 PRSS3P35030 304 aa13.33□□□□□ -0.28
CCDC88A-201ENST00000263630 CLCN2P51788 898 aa13.33□□□□□ -0.28
CCDC88A-201ENST00000263630 PMPCAQ10713 525 aa13.33□□□□□ -0.28
CCDC88A-201ENST00000263630 PCGF3Q3KNV8 242 aa13.33□□□□□ -0.28
CCDC88A-201ENST00000263630 BANPQ8N9N5 519 aa13.33□□□□□ -0.28
CCDC88A-201ENST00000263630 GCH1P30793 250 aa13.33□□□□□ -0.28
CCDC88A-201ENST00000263630 COX15Q7KZN9 410 aa13.33□□□□□ -0.28
CCDC88A-201ENST00000263630 SLAMF9Q96A28 289 aa13.33□□□□□ -0.28
CCDC88A-201ENST00000263630 P2RX6O15547 441 aa13.33□□□□□ -0.28
CCDC88A-201ENST00000263630 CRTAPO75718 401 aaPredicted RBP13.33□□□□□ -0.28
CCDC88A-201ENST00000263630 SHFQ7M4L6 423 aa13.33□□□□□ -0.28
CCDC88A-201ENST00000263630 NRROSQ86YC3 692 aa13.33□□□□□ -0.28
CCDC88A-201ENST00000263630 UEVLDQ8IX04 471 aa13.33□□□□□ -0.28
CCDC88A-201ENST00000263630 OR2T4Q8NH00 348 aa13.33□□□□□ -0.28
CCDC88A-201ENST00000263630 EBF2Q9HAK2 575 aa13.33□□□□□ -0.28
CCDC88A-201ENST00000263630 IL21RQ9HBE5 538 aa13.33□□□□□ -0.28
CCDC88A-201ENST00000263630 ACP6Q9NPH0 428 aa13.33□□□□□ -0.28
CCDC88A-201ENST00000263630 TXNL4BQ9NX01 149 aaKnown RBP13.33□□□□□ -0.28
CCDC88A-201ENST00000263630 A0A0D9SG52 128 aa13.33□□□□□ -0.28
CCDC88A-201ENST00000263630 H0Y8G0 127 aa13.33□□□□□ -0.28
CCDC88A-201ENST00000263630 GABARAPL2P60520 117 aa13.33□□□□□ -0.28
CCDC88A-201ENST00000263630 FAM111BQ6SJ93 734 aa13.33□□□□□ -0.28
CCDC88A-201ENST00000263630 MR1Q95460 341 aa13.33□□□□□ -0.28
CCDC88A-201ENST00000263630 SGK3Q96BR1 496 aa13.33□□□□□ -0.28
CCDC88A-201ENST00000263630 UBL7Q96S82 380 aaPredicted RBP13.33□□□□□ -0.28
CCDC88A-201ENST00000263630 PIP5K1AQ99755 562 aa13.33□□□□□ -0.28
CCDC88A-201ENST00000263630 ACOT13Q9NPJ3 140 aa13.33□□□□□ -0.28
CCDC88A-201ENST00000263630 A6NCN8 305 aa13.33□□□□□ -0.28
CCDC88A-201ENST00000263630 ZNF736B4DX44 427 aaPredicted RBP13.33□□□□□ -0.28
CCDC88A-201ENST00000263630 PRAMEF2O60811 474 aa13.33□□□□□ -0.28
CCDC88A-201ENST00000263630 HBG1P69891 147 aa13.33□□□□□ -0.28
CCDC88A-201ENST00000263630 HBG2P69892 147 aa13.33□□□□□ -0.28
CCDC88A-201ENST00000263630 MEP1AQ16819 746 aa13.33□□□□□ -0.28
CCDC88A-201ENST00000263630 OR5AK2Q8NH90 309 aa13.33□□□□□ -0.28
CCDC88A-201ENST00000263630 PRTFDC1Q9NRG1 225 aa13.33□□□□□ -0.28
CCDC88A-201ENST00000263630 SNU13P55769 128 aaKnown RBP13.33□□□□□ -0.28
CCDC88A-201ENST00000263630 UGCGQ16739 394 aa13.33□□□□□ -0.28
CCDC88A-201ENST00000263630 ZNF585AQ6P3V2 769 aa13.33□□□□□ -0.28
CCDC88A-201ENST00000263630 ANKRD13BQ86YJ7 626 aa13.33□□□□□ -0.28
CCDC88A-201ENST00000263630 ACBD7Q8N6N7 88 aa13.33□□□□□ -0.28
CCDC88A-201ENST00000263630 TMEM185AQ8NFB2 350 aa13.33□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 63.5 ms